Wall clock time and date at job start Tue Mar 31 2020 13:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47056 * 2 1 4 4 C 1.50699 * 109.47236 * 240.00060 * 2 1 3 5 5 O 1.21285 * 120.00160 * 255.74923 * 4 2 1 6 6 N 1.34775 * 120.00063 * 75.74162 * 4 2 1 7 7 C 1.37096 * 120.00365 * 177.10840 * 6 4 2 8 8 H 1.07999 * 119.99945 * 210.33039 * 7 6 4 9 9 C 1.38948 * 119.99585 * 30.32711 * 7 6 4 10 10 N 1.31408 * 120.00314 * 19.63406 * 9 7 6 11 11 Si 1.86802 * 119.99589 * 199.63389 * 9 7 6 12 12 H 1.48494 * 109.47410 * 60.00041 * 11 9 7 13 13 H 1.48509 * 109.47010 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47090 * 299.99461 * 11 9 7 15 15 C 1.46507 * 119.99881 * 357.11461 * 6 4 2 16 16 C 1.52998 * 109.47322 * 99.69452 * 15 6 4 17 17 C 1.50696 * 109.47257 * 182.22617 * 16 15 6 18 18 O 1.20827 * 119.99930 * 0.02562 * 17 16 15 19 19 O 1.34230 * 120.00428 * 179.97438 * 17 16 15 20 20 C 1.50696 * 109.47393 * 120.00096 * 2 1 3 21 21 C 1.38226 * 120.01442 * 240.00034 * 20 2 1 22 22 C 1.38213 * 120.02990 * 179.74285 * 21 20 2 23 23 C 1.38272 * 120.05068 * 0.25756 * 22 21 20 24 24 C 1.38180 * 120.02266 * 359.97438 * 23 22 21 25 25 C 1.38429 * 120.01556 * 60.25136 * 20 2 1 26 26 F 1.35106 * 120.02709 * 359.97438 * 25 20 2 27 27 H 1.09002 * 109.46503 * 304.40459 * 1 2 3 28 28 H 1.08995 * 109.47620 * 64.40567 * 1 2 3 29 29 H 1.09000 * 109.46818 * 184.41068 * 1 2 3 30 30 H 1.09001 * 109.47516 * 199.13283 * 3 2 1 31 31 H 1.09008 * 109.47272 * 319.12869 * 3 2 1 32 32 H 1.09001 * 109.47809 * 79.12774 * 3 2 1 33 33 H 0.97005 * 119.99978 * 184.96607 * 10 9 7 34 34 H 1.09000 * 109.46647 * 219.69744 * 15 6 4 35 35 H 1.09000 * 109.47041 * 339.69336 * 15 6 4 36 36 H 1.08994 * 109.47350 * 302.23025 * 16 15 6 37 37 H 1.09004 * 109.47198 * 62.23208 * 16 15 6 38 38 H 0.96693 * 117.00086 * 180.02562 * 19 17 16 39 39 H 1.08009 * 119.98386 * 0.02562 * 21 20 2 40 40 H 1.08004 * 119.97968 * 180.23175 * 22 21 20 41 41 H 1.07998 * 119.99026 * 179.97438 * 23 22 21 42 42 H 1.08000 * 120.01167 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.4783 -1.8348 -1.1420 6 7 1.9860 -0.0963 -2.4293 7 6 2.4971 -0.7188 -3.5387 8 1 2.9139 -0.1315 -4.3435 9 6 2.4789 -2.1053 -3.6275 10 7 1.6570 -2.8013 -2.8744 11 14 3.6227 -2.9801 -4.8174 12 1 5.0318 -2.6611 -4.4745 13 1 3.4101 -4.4467 -4.7207 14 1 3.3357 -2.5281 -6.2025 15 6 1.3895 1.2367 -2.5469 16 6 2.4979 2.2910 -2.5729 17 6 1.8827 3.6651 -2.6388 18 8 0.6809 3.7885 -2.6621 19 8 2.6696 4.7520 -2.6706 20 6 2.0324 -0.7104 1.2304 21 6 2.8271 -0.0389 2.1404 22 6 3.2837 -0.6886 3.2717 23 6 2.9505 -2.0124 3.4919 24 6 2.1602 -2.6871 2.5811 25 6 1.7025 -2.0372 1.4471 26 9 0.9296 -2.6960 0.5561 27 1 -0.3632 0.5807 0.8479 28 1 -0.3634 0.4439 -0.9268 29 1 -0.3633 -1.0246 0.0790 30 1 3.0765 1.4615 -0.3368 31 1 1.4284 2.0441 -0.6725 32 1 1.9784 1.8498 1.0092 33 1 1.6941 -3.7706 -2.8834 34 1 0.8103 1.2954 -3.4684 35 1 0.7351 1.4184 -1.6943 36 1 3.1014 2.2061 -1.6693 37 1 3.1290 2.1333 -3.4475 38 1 2.2292 5.6118 -2.7123 39 1 3.0877 0.9953 1.9697 40 1 3.9015 -0.1620 3.9841 41 1 3.3082 -2.5192 4.3760 42 1 1.8997 -3.7210 2.7535 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589560614.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:04 Heat of formation + Delta-G solvation = -86.248772 kcal Electronic energy + Delta-G solvation = -29410.221244 eV Core-core repulsion = 25272.500567 eV Total energy + Delta-G solvation = -4137.720677 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -47.98637 -40.38809 -39.54218 -38.02892 -36.06804 -34.83888 -34.50630 -31.89401 -30.30424 -30.12447 -29.27450 -26.95176 -25.14554 -24.28006 -23.11772 -21.95008 -21.08855 -20.55677 -19.13212 -17.98602 -17.03996 -16.59545 -16.33605 -15.92145 -15.62534 -15.40403 -14.96899 -14.69767 -14.54368 -14.16751 -13.92052 -13.60874 -13.26819 -13.15247 -13.06274 -12.73536 -12.44840 -12.35030 -11.97462 -11.75016 -11.49265 -11.43076 -11.34773 -11.25741 -11.06018 -10.86634 -10.83499 -10.64921 -10.47366 -10.34241 -10.13322 -9.99530 -9.78248 -8.98286 -8.60683 -8.09130 -7.84125 -6.88913 -5.84611 -3.72759 1.59671 1.66159 2.37900 3.19776 3.37793 3.44066 3.45664 3.98113 4.36887 4.45666 4.86780 4.88968 5.09373 5.14290 5.21444 5.23730 5.31401 5.45221 5.48146 5.50168 5.59657 5.70579 5.73337 5.89882 5.96354 5.98871 6.10051 6.20611 6.24749 6.27833 6.39616 6.42626 6.52352 6.55595 6.64717 6.70041 6.72655 6.79000 6.89459 7.36805 7.61413 8.03148 8.26850 9.09842 9.25196 9.74897 10.43370 11.07767 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009182 B = 0.007021 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3048.685385 B = 3987.111877 C = 6196.013433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.039 4.039 3 C -0.169 4.169 4 C 0.452 3.548 5 O -0.488 6.488 6 N -0.447 5.447 7 C -0.345 4.345 8 H 0.081 0.919 9 C 0.049 3.951 10 N -0.781 5.781 11 Si 0.905 3.095 12 H -0.280 1.280 13 H -0.289 1.289 14 H -0.281 1.281 15 C 0.103 3.897 16 C -0.149 4.149 17 C 0.481 3.519 18 O -0.519 6.519 19 O -0.521 6.521 20 C -0.085 4.085 21 C -0.097 4.097 22 C -0.147 4.147 23 C -0.101 4.101 24 C -0.171 4.171 25 C 0.148 3.852 26 F -0.112 7.112 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.260 0.740 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.118 0.882 37 H 0.109 0.891 38 H 0.403 0.597 39 H 0.131 0.869 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.098 9.733 9.190 13.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.043 4.043 3 C -0.226 4.226 4 C 0.238 3.762 5 O -0.361 6.361 6 N -0.169 5.169 7 C -0.471 4.471 8 H 0.099 0.901 9 C -0.163 4.163 10 N -0.416 5.416 11 Si 0.733 3.267 12 H -0.206 1.206 13 H -0.214 1.214 14 H -0.207 1.207 15 C -0.022 4.022 16 C -0.188 4.188 17 C 0.324 3.676 18 O -0.408 6.408 19 O -0.333 6.333 20 C -0.086 4.086 21 C -0.115 4.115 22 C -0.165 4.165 23 C -0.119 4.119 24 C -0.190 4.190 25 C 0.128 3.872 26 F -0.090 7.090 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.135 0.865 37 H 0.127 0.873 38 H 0.261 0.739 39 H 0.149 0.851 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.045 8.532 9.219 12.605 hybrid contribution 0.194 0.021 -0.806 0.829 sum 1.239 8.553 8.414 12.061 Atomic orbital electron populations 1.21954 0.93141 1.03206 1.01597 1.19624 0.96447 0.95005 0.93244 1.22984 1.01825 0.95483 1.02262 1.19251 0.86978 0.87465 0.82548 1.90589 1.45405 1.17005 1.83086 1.43147 1.54069 1.13113 1.06539 1.19030 1.39743 0.90043 0.98330 0.90146 1.24942 0.96960 0.96795 0.97622 1.70109 1.30646 1.06616 1.34279 0.86380 0.81408 0.78536 0.80377 1.20569 1.21439 1.20665 1.21768 0.93083 0.83981 1.03393 1.22519 1.02343 0.86770 1.07131 1.23845 0.85439 0.87241 0.71069 1.90703 1.16573 1.87403 1.46075 1.84594 1.44886 1.18057 1.85751 1.19606 0.99499 0.93083 0.96442 1.21048 0.96640 1.00234 0.93573 1.21001 1.02078 0.95101 0.98307 1.20842 0.97714 0.94632 0.98711 1.21100 1.02069 1.00796 0.94994 1.17485 0.92411 0.90093 0.87211 1.91595 1.71108 1.80102 1.66190 0.93032 0.91472 0.91340 0.91355 0.90067 0.92334 0.92904 0.91155 0.89122 0.86450 0.87291 0.73891 0.85089 0.86147 0.85964 0.85491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 8.04 37.16 0.30 -2.30 16 2 C -0.04 -0.76 0.49 -156.81 -0.08 -0.83 16 3 C -0.17 -2.61 5.61 37.16 0.21 -2.40 16 4 C 0.45 11.01 5.55 -10.99 -0.06 10.95 16 5 O -0.49 -13.89 10.02 5.55 0.06 -13.83 16 6 N -0.45 -10.65 2.61 -114.81 -0.30 -10.95 16 7 C -0.34 -9.13 9.43 -14.93 -0.14 -9.27 16 8 H 0.08 2.01 7.91 -52.49 -0.41 1.60 16 9 C 0.05 1.36 4.47 -17.47 -0.08 1.28 16 10 N -0.78 -23.06 10.34 55.50 0.57 -22.49 16 11 Si 0.91 21.84 29.60 -169.99 -5.03 16.81 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 C 0.10 1.96 3.82 -4.04 -0.02 1.94 16 16 C -0.15 -2.31 5.09 -27.89 -0.14 -2.45 16 17 C 0.48 6.77 7.87 36.00 0.28 7.05 16 18 O -0.52 -8.58 16.73 -18.75 -0.31 -8.89 16 19 O -0.52 -5.70 13.42 -39.26 -0.53 -6.23 16 20 C -0.08 -1.59 4.54 -104.56 -0.47 -2.07 16 21 C -0.10 -1.49 8.95 -39.59 -0.35 -1.84 16 22 C -0.15 -1.99 10.04 -39.58 -0.40 -2.38 16 23 C -0.10 -1.40 10.04 -39.59 -0.40 -1.80 16 24 C -0.17 -2.84 10.03 -39.51 -0.40 -3.23 16 25 C 0.15 2.96 6.09 -39.42 -0.24 2.72 16 26 F -0.11 -2.62 13.26 2.25 0.03 -2.59 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 1.24 5.94 -51.93 -0.31 0.93 16 29 H 0.07 1.39 6.21 -51.93 -0.32 1.07 16 30 H 0.07 1.05 5.94 -51.93 -0.31 0.75 16 31 H 0.08 1.22 3.56 -51.92 -0.19 1.04 16 32 H 0.06 0.75 6.18 -51.93 -0.32 0.43 16 33 H 0.26 7.58 8.32 -40.82 -0.34 7.24 16 34 H 0.07 1.41 8.11 -51.93 -0.42 0.98 16 35 H 0.09 1.64 2.51 -51.93 -0.13 1.51 16 36 H 0.12 1.72 4.65 -51.93 -0.24 1.48 16 37 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 38 H 0.40 2.57 9.10 45.56 0.41 2.98 16 39 H 0.13 1.70 5.73 -52.48 -0.30 1.40 16 40 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 41 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 42 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 331.98 15.07 5.00 5.00 Total: -1.00 -34.48 331.98 -6.28 -40.76 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -3.79 Total: 7.04 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -1.98 Total: -4.63 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 0.27 Total: -33.44 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.79 Total: -28.96 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.03 Total: -2.59 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.48 -6.28 -40.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589560614.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.489 kcal (2) G-P(sol) polarization free energy of solvation -34.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds