Wall clock time and date at job start Tue Mar 31 2020 13:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47245 * 2 1 4 4 C 1.50694 * 109.47090 * 240.00210 * 2 1 3 5 5 O 1.21299 * 120.00168 * 325.66300 * 4 2 1 6 6 N 1.34781 * 120.00136 * 145.67241 * 4 2 1 7 7 C 1.37094 * 119.99824 * 242.05690 * 6 4 2 8 8 H 1.08002 * 120.00252 * 197.66715 * 7 6 4 9 9 C 1.38949 * 119.99834 * 17.67111 * 7 6 4 10 10 N 1.31412 * 120.00205 * 13.02681 * 9 7 6 11 11 Si 1.86809 * 119.99978 * 193.02621 * 9 7 6 12 12 H 1.48495 * 109.46957 * 89.99603 * 11 9 7 13 13 H 1.48495 * 109.46993 * 210.00319 * 11 9 7 14 14 H 1.48500 * 109.46865 * 329.99957 * 11 9 7 15 15 C 1.46503 * 119.99985 * 62.05927 * 6 4 2 16 16 C 1.52999 * 109.47244 * 95.41007 * 15 6 4 17 17 C 1.50698 * 109.47009 * 184.89210 * 16 15 6 18 18 O 1.20823 * 119.99882 * 359.97438 * 17 16 15 19 19 O 1.34225 * 119.99784 * 180.02562 * 17 16 15 20 20 C 1.50692 * 109.47116 * 119.99702 * 2 1 3 21 21 C 1.38264 * 119.99025 * 113.08731 * 20 2 1 22 22 C 1.38223 * 120.05683 * 179.97438 * 21 20 2 23 23 C 1.38215 * 120.02514 * 0.04713 * 22 21 20 24 24 C 1.38443 * 119.97338 * 359.97151 * 23 22 21 25 25 F 1.35098 * 120.02712 * 180.02562 * 24 23 22 26 26 C 1.38179 * 119.99123 * 293.13016 * 20 2 1 27 27 H 1.08999 * 109.47329 * 304.79678 * 1 2 3 28 28 H 1.09007 * 109.46788 * 64.79141 * 1 2 3 29 29 H 1.08995 * 109.47277 * 184.78976 * 1 2 3 30 30 H 1.08990 * 109.47169 * 183.61482 * 3 2 1 31 31 H 1.09003 * 109.46810 * 303.61614 * 3 2 1 32 32 H 1.08993 * 109.47021 * 63.60947 * 3 2 1 33 33 H 0.97003 * 119.99858 * 184.99302 * 10 9 7 34 34 H 1.09000 * 109.46711 * 215.40902 * 15 6 4 35 35 H 1.09000 * 109.46734 * 335.40639 * 15 6 4 36 36 H 1.08995 * 109.47397 * 304.89191 * 16 15 6 37 37 H 1.09003 * 109.46681 * 64.89311 * 16 15 6 38 38 H 0.96704 * 117.00095 * 179.97438 * 19 17 16 39 39 H 1.08002 * 119.97218 * 0.04251 * 21 20 2 40 40 H 1.08002 * 119.98667 * 180.02562 * 22 21 20 41 41 H 1.07999 * 120.01439 * 179.97438 * 23 22 21 42 42 H 1.08006 * 120.00804 * 0.25700 * 26 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2304 5 8 1.4167 -1.6539 -1.6798 6 7 3.1657 -0.2973 -1.8315 7 6 3.1285 0.1630 -3.1223 8 1 4.0387 0.2235 -3.7006 9 6 1.9198 0.5520 -3.6866 10 7 0.8638 0.7245 -2.9237 11 14 1.7958 0.8296 -5.5298 12 1 1.4142 -0.4408 -6.1971 13 1 0.7660 1.8631 -5.8065 14 1 3.1090 1.2874 -6.0507 15 6 4.4375 -0.3404 -1.1056 16 6 5.1742 -1.6380 -1.4439 17 6 6.4237 -1.7389 -0.6074 18 8 6.6971 -0.8627 0.1783 19 8 7.2333 -2.8018 -0.7360 20 6 2.0323 -0.7103 1.2304 21 6 2.7054 -1.9119 1.1084 22 6 3.1672 -2.5643 2.2361 23 6 2.9557 -2.0166 3.4873 24 6 2.2815 -0.8137 3.6108 25 9 2.0746 -0.2771 4.8333 26 6 1.8193 -0.1611 2.4804 27 1 -0.3634 0.5864 0.8439 28 1 -0.3633 0.4377 -0.9299 29 1 -0.3633 -1.0240 0.0858 30 1 3.1280 1.4432 -0.0648 31 1 1.6247 1.9747 -0.8558 32 1 1.7305 1.9373 0.9205 33 1 0.0035 0.9250 -3.3245 34 1 5.0510 0.5123 -1.3966 35 1 4.2453 -0.3006 -0.0334 36 1 4.5265 -2.4890 -1.2336 37 1 5.4431 -1.6382 -2.5002 38 1 8.0231 -2.8220 -0.1784 39 1 2.8715 -2.3405 0.1311 40 1 3.6932 -3.5026 2.1394 41 1 3.3162 -2.5267 4.3683 42 1 1.2892 0.7751 2.5758 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589560715.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:07 Heat of formation + Delta-G solvation = -131.643441 kcal Electronic energy + Delta-G solvation = -29138.913764 eV Core-core repulsion = 24999.224626 eV Total energy + Delta-G solvation = -4139.689138 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.71826 -40.24971 -39.78722 -37.96873 -36.04069 -34.85277 -34.27430 -32.37932 -30.32859 -30.08341 -29.44314 -26.35331 -25.26515 -24.37568 -23.30394 -22.26105 -21.22910 -20.43682 -18.82632 -17.93894 -17.59371 -16.49133 -16.30421 -15.94544 -15.90235 -15.64024 -15.41322 -15.00026 -14.63271 -14.38618 -14.09713 -13.68657 -13.49945 -13.07073 -12.99881 -12.81057 -12.61868 -12.06056 -11.77519 -11.66984 -11.52202 -11.43304 -11.37594 -11.20716 -11.10028 -10.97237 -10.92699 -10.68407 -10.62042 -10.35976 -10.25064 -10.20656 -9.99506 -9.12069 -8.69603 -8.42596 -8.34867 -7.42402 -6.22773 -3.67354 1.39342 1.44006 2.42580 3.19551 3.24935 3.33498 3.34442 3.72787 3.82579 4.25744 4.43435 4.80224 4.97176 5.06452 5.15456 5.28210 5.34597 5.42263 5.48421 5.58586 5.70290 5.80473 5.90236 5.95890 6.00306 6.18011 6.26932 6.29715 6.34124 6.38132 6.49964 6.52848 6.53877 6.68019 6.75714 6.80380 6.90734 7.10187 7.22256 7.28182 7.51470 8.03931 8.08601 8.95991 9.21708 9.46773 9.93337 10.91452 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011009 B = 0.006119 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2542.808100 B = 4575.092966 C = 6426.404149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.040 4.040 3 C -0.125 4.125 4 C 0.607 3.393 5 O -0.519 6.519 6 N -0.552 5.552 7 C -0.290 4.290 8 H 0.084 0.916 9 C 0.026 3.974 10 N -0.885 5.885 11 Si 0.920 3.080 12 H -0.283 1.283 13 H -0.288 1.288 14 H -0.276 1.276 15 C 0.143 3.857 16 C -0.134 4.134 17 C 0.481 3.519 18 O -0.517 6.517 19 O -0.522 6.522 20 C -0.025 4.025 21 C -0.129 4.129 22 C -0.089 4.089 23 C -0.166 4.166 24 C 0.094 3.906 25 F -0.145 7.145 26 C -0.147 4.147 27 H 0.040 0.960 28 H 0.092 0.908 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.037 0.963 33 H 0.268 0.732 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.100 0.900 37 H 0.109 0.891 38 H 0.403 0.597 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.680 -3.466 8.506 10.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.045 4.045 3 C -0.182 4.182 4 C 0.398 3.602 5 O -0.393 6.393 6 N -0.281 5.281 7 C -0.417 4.417 8 H 0.102 0.898 9 C -0.175 4.175 10 N -0.527 5.527 11 Si 0.749 3.251 12 H -0.209 1.209 13 H -0.214 1.214 14 H -0.201 1.201 15 C 0.017 3.983 16 C -0.174 4.174 17 C 0.324 3.676 18 O -0.405 6.405 19 O -0.333 6.333 20 C -0.026 4.026 21 C -0.147 4.147 22 C -0.107 4.107 23 C -0.184 4.184 24 C 0.075 3.925 25 F -0.124 7.124 26 C -0.166 4.166 27 H 0.059 0.941 28 H 0.110 0.890 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.118 0.882 37 H 0.127 0.873 38 H 0.260 0.740 39 H 0.148 0.852 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.835 -3.576 8.232 10.195 hybrid contribution 0.421 0.230 -0.325 0.579 sum 5.256 -3.345 7.907 10.067 Atomic orbital electron populations 1.21664 0.91812 1.01262 1.02816 1.19933 0.97549 0.96400 0.90580 1.21818 1.01184 0.93556 1.01616 1.19010 0.79611 0.80171 0.81452 1.90433 1.58498 1.26256 1.64077 1.42635 1.03528 1.68463 1.13465 1.19247 0.95452 1.39076 0.87917 0.89799 1.24954 0.96185 0.96942 0.99448 1.69244 1.00358 1.49000 1.34108 0.86025 0.77655 0.77647 0.83819 1.20940 1.21364 1.20146 1.20830 0.87122 0.93896 0.96436 1.22132 0.90992 1.03611 1.00672 1.23833 0.84582 0.78059 0.81132 1.90700 1.73496 1.39879 1.36457 1.84601 1.37643 1.46333 1.64762 1.19885 0.94568 0.93981 0.94160 1.21385 0.98685 0.95253 0.99411 1.20923 0.98760 0.99545 0.91460 1.21004 1.02739 0.95801 0.98902 1.17647 1.01018 0.93979 0.79817 1.91463 1.93376 1.85969 1.41610 1.20952 1.03181 1.01573 0.90899 0.94121 0.88957 0.93288 0.92642 0.89417 0.94412 0.92027 0.91342 0.91473 0.88171 0.87265 0.73955 0.85240 0.85428 0.85285 0.84747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.34 7.84 37.16 0.29 -2.04 16 2 C -0.04 -0.80 0.46 -156.82 -0.07 -0.88 16 3 C -0.12 -2.41 7.79 37.16 0.29 -2.12 16 4 C 0.61 14.00 1.02 -10.99 -0.01 13.99 16 5 O -0.52 -13.74 16.14 5.54 0.09 -13.65 16 6 N -0.55 -12.41 1.84 -114.81 -0.21 -12.62 16 7 C -0.29 -7.14 9.65 -14.94 -0.14 -7.28 16 8 H 0.08 1.97 7.86 -52.49 -0.41 1.56 16 9 C 0.03 0.66 5.16 -17.47 -0.09 0.57 16 10 N -0.88 -22.79 8.37 55.50 0.46 -22.33 16 11 Si 0.92 20.42 29.58 -169.99 -5.03 15.39 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 13 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 15 C 0.14 2.70 3.19 -4.04 -0.01 2.69 16 16 C -0.13 -2.17 6.10 -27.88 -0.17 -2.34 16 17 C 0.48 7.10 8.33 36.00 0.30 7.40 16 18 O -0.52 -8.88 16.68 -18.75 -0.31 -9.19 16 19 O -0.52 -6.05 13.42 -39.24 -0.53 -6.58 16 20 C -0.03 -0.45 4.00 -104.64 -0.42 -0.87 16 21 C -0.13 -2.21 7.71 -39.58 -0.31 -2.51 16 22 C -0.09 -1.27 10.04 -39.60 -0.40 -1.67 16 23 C -0.17 -2.29 10.03 -39.51 -0.40 -2.69 16 24 C 0.09 1.44 7.30 -39.42 -0.29 1.15 16 25 F -0.15 -2.17 17.27 2.25 0.04 -2.13 16 26 C -0.15 -2.37 8.81 -39.52 -0.35 -2.71 16 27 H 0.04 0.68 8.02 -51.93 -0.42 0.27 16 28 H 0.09 2.03 6.50 -51.93 -0.34 1.69 16 29 H 0.05 0.99 8.01 -51.93 -0.42 0.57 16 30 H 0.05 1.08 5.87 -51.93 -0.30 0.77 16 31 H 0.09 1.91 7.22 -51.93 -0.37 1.53 16 32 H 0.04 0.62 6.90 -51.93 -0.36 0.26 16 33 H 0.27 6.82 8.32 -40.82 -0.34 6.48 16 34 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 35 H 0.07 1.26 4.85 -51.93 -0.25 1.01 16 36 H 0.10 1.63 7.20 -51.93 -0.37 1.25 16 37 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 38 H 0.40 2.81 9.10 45.56 0.41 3.23 16 39 H 0.13 2.40 5.06 -52.49 -0.27 2.14 16 40 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 41 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 42 H 0.13 2.00 7.15 -52.48 -0.38 1.62 16 LS Contribution 346.46 15.07 5.22 5.22 Total: -1.00 -29.89 346.46 -6.33 -36.23 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -4.30 Total: 8.99 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -1.77 Total: 0.69 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: 0.25 Total: -34.95 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -0.75 Total: -29.43 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.03 Total: 15.39 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.89 -6.33 -36.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589560715.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.415 kcal (2) G-P(sol) polarization free energy of solvation -29.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds