Wall clock time and date at job start Tue Mar 31 2020 14:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47051 * 2 1 4 4 C 1.52993 * 109.47240 * 240.00122 * 2 1 3 5 5 C 1.50704 * 109.47259 * 59.99747 * 4 2 1 6 6 H 1.07999 * 119.99840 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00046 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99918 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00204 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.46958 * 89.99683 * 9 7 5 11 11 H 1.48499 * 109.46874 * 209.99848 * 9 7 5 12 12 H 1.48501 * 109.47035 * 329.99650 * 9 7 5 13 13 C 1.53005 * 109.46961 * 120.00105 * 2 1 3 14 14 N 1.46497 * 109.47139 * 299.99828 * 13 2 1 15 15 C 1.38426 * 119.99974 * 180.02562 * 14 13 2 16 16 N 1.32640 * 119.53471 * 5.54426 * 15 14 13 17 17 C 1.31637 * 121.64565 * 179.97438 * 16 15 14 18 18 C 1.39660 * 120.50609 * 0.02562 * 17 16 15 19 19 C 1.47404 * 120.47890 * 180.02562 * 18 17 16 20 20 O 1.21509 * 120.00298 * 179.97438 * 19 18 17 21 21 O 1.34760 * 119.99906 * 0.02562 * 19 18 17 22 22 C 1.40367 * 119.03977 * 0.02562 * 18 17 16 23 23 C 1.36873 * 118.48850 * 359.97438 * 22 18 17 24 24 N 1.48015 * 120.30459 * 180.02562 * 23 22 18 25 25 O 1.21802 * 120.00316 * 37.04088 * 24 23 22 26 26 O 1.21800 * 119.99768 * 217.03625 * 24 23 22 27 27 H 1.09004 * 109.47599 * 299.99830 * 1 2 3 28 28 H 1.09002 * 109.47557 * 60.00072 * 1 2 3 29 29 H 1.09001 * 109.47034 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46985 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46881 * 300.00341 * 3 2 1 32 32 H 1.09003 * 109.46584 * 60.00182 * 3 2 1 33 33 H 1.08996 * 109.47325 * 180.02562 * 4 2 1 34 34 H 1.09001 * 109.47132 * 299.99970 * 4 2 1 35 35 H 0.97000 * 120.00474 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.46703 * 180.02562 * 13 2 1 37 37 H 1.08997 * 109.46783 * 59.99907 * 13 2 1 38 38 H 0.97005 * 120.00032 * 0.02562 * 14 13 2 39 39 H 1.08000 * 119.74586 * 180.28366 * 17 16 15 40 40 H 0.96698 * 116.99741 * 179.97438 * 21 19 18 41 41 H 1.08004 * 120.75288 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8712 -0.4815 -3.7319 8 7 1.4324 0.1381 -4.8057 9 14 2.9452 -2.0002 -3.9034 10 1 2.0866 -3.2110 -3.9494 11 1 3.7375 -1.9073 -5.1559 12 1 3.8652 -2.0896 -2.7412 13 6 2.0400 -0.7213 1.2493 14 7 1.5517 -0.0307 2.4454 15 6 1.8865 -0.5034 3.7027 16 7 2.7382 -1.5139 3.8159 17 6 3.0859 -1.9958 4.9905 18 6 2.5610 -1.4503 6.1641 19 6 2.9512 -1.9901 7.4791 20 8 2.4897 -1.5086 8.4948 21 8 3.8207 -3.0169 7.5550 22 6 1.6566 -0.3807 6.0734 23 6 1.3231 0.0887 4.8317 24 7 0.3737 1.2153 4.6893 25 8 0.3890 2.1300 5.4935 26 8 -0.4227 1.2277 3.7679 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8901 33 1 3.1300 -0.7216 -1.2490 34 1 1.6767 -1.7489 -1.2492 35 1 1.6667 -0.1932 -5.6868 36 1 3.1300 -0.7209 1.2495 37 1 1.6766 -1.7489 1.2492 38 1 0.9937 0.7578 2.3564 39 1 3.7855 -2.8166 5.0471 40 1 4.0466 -3.3364 8.4392 41 1 1.2336 0.0618 6.9632 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590656103.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:18 Heat of formation + Delta-G solvation = -60.920814 kcal Electronic energy + Delta-G solvation = -27258.748561 eV Core-core repulsion = 23142.046148 eV Total energy + Delta-G solvation = -4116.702413 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.59765 -41.17790 -40.09846 -38.18631 -36.79089 -36.58118 -35.10317 -33.65965 -32.47693 -31.14250 -27.96784 -27.05787 -26.78153 -26.66692 -24.83287 -23.65683 -22.39787 -21.87658 -19.77518 -19.41391 -18.82138 -18.28297 -18.00590 -17.76958 -17.18690 -16.91460 -16.50141 -16.19270 -15.35976 -15.21596 -14.58770 -14.14274 -14.03999 -13.95816 -13.81658 -13.53703 -12.89339 -12.82589 -12.36705 -12.09423 -11.85256 -11.77995 -11.52803 -11.35275 -11.25377 -11.24999 -11.08764 -11.03852 -10.85102 -10.69850 -10.64666 -10.31779 -10.06632 -9.84239 -9.67569 -9.10145 -8.60768 -8.56127 -6.10387 -4.08684 -0.32952 0.04227 0.80927 1.03971 1.97534 2.41835 2.55730 3.00631 3.25007 3.33635 3.34901 3.59500 3.91971 4.02679 4.29321 4.38016 4.38477 4.88508 5.07369 5.19010 5.22011 5.31159 5.38600 5.47952 5.83549 5.90360 5.95441 5.96705 6.03890 6.19357 6.32923 6.48412 6.52266 6.60606 6.76110 6.90636 6.96588 7.06329 7.22774 7.31593 7.36350 7.40336 7.69536 8.45540 8.93564 9.51176 11.02282 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017571 B = 0.003071 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.109846 B = 9115.289222 C =10469.008612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.065 4.065 3 C -0.132 4.132 4 C 0.001 3.999 5 C -0.514 4.514 6 H 0.079 0.921 7 C 0.068 3.932 8 N -0.901 5.901 9 Si 0.876 3.124 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.266 1.266 13 C 0.120 3.880 14 N -0.663 5.663 15 C 0.485 3.515 16 N -0.527 5.527 17 C 0.264 3.736 18 C -0.261 4.261 19 C 0.546 3.454 20 O -0.516 6.516 21 O -0.511 6.511 22 C 0.096 3.904 23 C -0.179 4.179 24 N 0.040 4.960 25 O -0.143 6.143 26 O -0.166 6.166 27 H 0.037 0.963 28 H 0.076 0.924 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.028 0.972 33 H 0.019 0.981 34 H 0.015 0.985 35 H 0.263 0.737 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.423 0.577 39 H 0.190 0.810 40 H 0.419 0.581 41 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.216 -5.270 23.295 24.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.065 4.065 3 C -0.189 4.189 4 C -0.037 4.037 5 C -0.552 4.552 6 H 0.097 0.903 7 C -0.134 4.134 8 N -0.540 5.540 9 Si 0.703 3.297 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.002 4.002 14 N -0.290 5.290 15 C 0.240 3.760 16 N -0.245 5.245 17 C 0.099 3.901 18 C -0.269 4.269 19 C 0.390 3.610 20 O -0.405 6.405 21 O -0.323 6.323 22 C 0.070 3.930 23 C -0.271 4.271 24 N 0.558 4.442 25 O -0.363 6.363 26 O -0.376 6.376 27 H 0.056 0.944 28 H 0.095 0.905 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.047 0.953 33 H 0.037 0.963 34 H 0.033 0.967 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.267 0.733 39 H 0.207 0.793 40 H 0.279 0.721 41 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 4.752 -5.899 21.920 23.192 hybrid contribution -0.065 -0.122 1.048 1.057 sum 4.687 -6.021 22.968 24.202 Atomic orbital electron populations 1.21836 0.94224 1.01573 1.01548 1.20768 0.96357 0.95935 0.93471 1.21814 1.00450 0.95529 1.01115 1.19573 0.96253 0.95484 0.92345 1.21050 1.32085 1.13516 0.88522 0.90300 1.24999 0.95674 0.96743 0.95957 1.69896 1.45685 1.40499 0.97931 0.86851 0.81256 0.83902 0.77683 1.20340 1.21457 1.19060 1.22071 0.99708 0.96382 0.82008 1.45876 1.49952 1.30532 1.02592 1.18298 0.85934 0.86664 0.85152 1.67918 1.16423 1.12954 1.27245 1.23421 0.89305 0.92539 0.84883 1.19420 1.09762 1.04806 0.92952 1.20052 0.75553 0.76934 0.88461 1.90936 1.53460 1.59083 1.37065 1.84508 1.59405 1.48230 1.40177 1.20855 0.87317 0.88735 0.96050 1.20896 1.08738 1.01365 0.96123 1.43279 0.99818 1.01036 1.00027 1.94565 1.75936 1.27410 1.38417 1.94543 1.33101 1.84719 1.25260 0.94370 0.90473 0.93214 0.93234 0.90269 0.95348 0.96299 0.96672 0.92698 0.90376 0.90404 0.73302 0.79278 0.72119 0.81416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 8.05 37.16 0.30 -2.00 16 2 C -0.06 -1.12 0.54 -154.51 -0.08 -1.20 16 3 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 4 C 0.00 0.03 3.11 -27.88 -0.09 -0.06 16 5 C -0.51 -13.30 8.20 -34.44 -0.28 -13.58 16 6 H 0.08 2.18 5.92 -52.49 -0.31 1.87 16 7 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.90 -26.62 13.96 55.43 0.77 -25.85 16 9 Si 0.88 20.66 27.47 -169.99 -4.67 15.99 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 13 C 0.12 1.75 4.56 -4.04 -0.02 1.73 16 14 N -0.66 -8.87 4.87 -60.46 -0.29 -9.17 16 15 C 0.49 5.97 7.43 -155.28 -1.15 4.81 16 16 N -0.53 -5.80 9.54 -12.13 -0.12 -5.91 16 17 C 0.26 2.13 10.79 -17.10 -0.18 1.95 16 18 C -0.26 -2.23 5.89 -104.83 -0.62 -2.84 16 19 C 0.55 4.36 8.27 34.46 0.28 4.65 16 20 O -0.52 -5.66 17.19 -19.27 -0.33 -6.00 16 21 O -0.51 -2.37 12.70 -40.65 -0.52 -2.89 16 22 C 0.10 0.95 9.27 -39.28 -0.36 0.58 16 23 C -0.18 -2.12 6.50 -80.02 -0.52 -2.64 16 24 N 0.04 0.54 4.29 33.93 0.15 0.68 16 25 O -0.14 -1.97 18.96 -29.46 -0.56 -2.53 16 26 O -0.17 -2.42 16.72 -29.46 -0.49 -2.92 16 27 H 0.04 0.58 6.86 -51.93 -0.36 0.22 16 28 H 0.08 1.49 6.62 -51.93 -0.34 1.15 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 1.52 6.62 -51.93 -0.34 1.18 16 32 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 33 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 34 H 0.02 0.32 7.57 -51.93 -0.39 -0.07 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.42 5.83 3.68 -40.82 -0.15 5.68 16 39 H 0.19 0.93 7.61 -52.49 -0.40 0.53 16 40 H 0.42 0.19 9.11 45.56 0.42 0.61 16 41 H 0.17 1.53 7.70 -52.48 -0.40 1.12 16 LS Contribution 349.21 15.07 5.26 5.26 Total: -1.00 -31.49 349.21 -7.20 -38.69 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -3.87 Total: 3.43 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -2.52 Total: -8.79 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.51 Total: -40.25 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -1.90 Total: -14.34 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.67 Total: 15.99 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.49 -7.20 -38.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590656103.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.232 kcal (2) G-P(sol) polarization free energy of solvation -31.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds