Wall clock time and date at job start Tue Mar 31 2020 14:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47051 * 2 1 4 4 C 1.52993 * 109.47240 * 240.00122 * 2 1 3 5 5 C 1.50704 * 109.47259 * 59.99747 * 4 2 1 6 6 H 1.07999 * 119.99840 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00046 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99918 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00204 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.46958 * 89.99683 * 9 7 5 11 11 H 1.48499 * 109.46874 * 209.99848 * 9 7 5 12 12 H 1.48501 * 109.47035 * 329.99650 * 9 7 5 13 13 C 1.53005 * 109.46961 * 120.00105 * 2 1 3 14 14 N 1.46497 * 109.47139 * 299.99828 * 13 2 1 15 15 C 1.38426 * 119.99974 * 180.02562 * 14 13 2 16 16 N 1.32640 * 119.53471 * 5.54426 * 15 14 13 17 17 C 1.31637 * 121.64565 * 179.97438 * 16 15 14 18 18 C 1.39660 * 120.50609 * 0.02562 * 17 16 15 19 19 C 1.47404 * 120.47890 * 180.02562 * 18 17 16 20 20 O 1.21509 * 120.00298 * 179.97438 * 19 18 17 21 21 O 1.34760 * 119.99906 * 0.02562 * 19 18 17 22 22 C 1.40367 * 119.03977 * 0.02562 * 18 17 16 23 23 C 1.36873 * 118.48850 * 359.97438 * 22 18 17 24 24 N 1.48015 * 120.30459 * 180.02562 * 23 22 18 25 25 O 1.21802 * 120.00316 * 37.04088 * 24 23 22 26 26 O 1.21800 * 119.99768 * 217.03625 * 24 23 22 27 27 H 1.09004 * 109.47599 * 299.99830 * 1 2 3 28 28 H 1.09002 * 109.47557 * 60.00072 * 1 2 3 29 29 H 1.09001 * 109.47034 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46985 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46881 * 300.00341 * 3 2 1 32 32 H 1.09003 * 109.46584 * 60.00182 * 3 2 1 33 33 H 1.08996 * 109.47325 * 180.02562 * 4 2 1 34 34 H 1.09001 * 109.47132 * 299.99970 * 4 2 1 35 35 H 0.97000 * 120.00474 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.46703 * 180.02562 * 13 2 1 37 37 H 1.08997 * 109.46783 * 59.99907 * 13 2 1 38 38 H 0.97005 * 120.00032 * 0.02562 * 14 13 2 39 39 H 1.08000 * 119.74586 * 180.28366 * 17 16 15 40 40 H 0.96698 * 116.99741 * 179.97438 * 21 19 18 41 41 H 1.08004 * 120.75288 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8712 -0.4815 -3.7319 8 7 1.4324 0.1381 -4.8057 9 14 2.9452 -2.0002 -3.9034 10 1 2.0866 -3.2110 -3.9494 11 1 3.7375 -1.9073 -5.1559 12 1 3.8652 -2.0896 -2.7412 13 6 2.0400 -0.7213 1.2493 14 7 1.5517 -0.0307 2.4454 15 6 1.8865 -0.5034 3.7027 16 7 2.7382 -1.5139 3.8159 17 6 3.0859 -1.9958 4.9905 18 6 2.5610 -1.4503 6.1641 19 6 2.9512 -1.9901 7.4791 20 8 2.4897 -1.5086 8.4948 21 8 3.8207 -3.0169 7.5550 22 6 1.6566 -0.3807 6.0734 23 6 1.3231 0.0887 4.8317 24 7 0.3737 1.2153 4.6893 25 8 0.3890 2.1300 5.4935 26 8 -0.4227 1.2277 3.7679 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8901 33 1 3.1300 -0.7216 -1.2490 34 1 1.6767 -1.7489 -1.2492 35 1 1.6667 -0.1932 -5.6868 36 1 3.1300 -0.7209 1.2495 37 1 1.6766 -1.7489 1.2492 38 1 0.9937 0.7578 2.3564 39 1 3.7855 -2.8166 5.0471 40 1 4.0466 -3.3364 8.4392 41 1 1.2336 0.0618 6.9632 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590656103.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:17 Heat of formation + Delta-G solvation = -80.813878 kcal Electronic energy + Delta-G solvation = -27259.611189 eV Core-core repulsion = 23142.046148 eV Total energy + Delta-G solvation = -4117.565041 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.55817 -41.96475 -40.81036 -39.40692 -37.83766 -37.12943 -36.26670 -34.48128 -34.37695 -32.14479 -29.71715 -28.08897 -28.01135 -27.87015 -25.73316 -24.80107 -23.74016 -22.76333 -20.62005 -20.40102 -19.85228 -19.25606 -19.00402 -18.88819 -18.64775 -17.90398 -17.32851 -16.85031 -16.38792 -16.29219 -16.09658 -15.42604 -15.31604 -15.00353 -14.53332 -14.49269 -14.29921 -14.20068 -14.14015 -13.05830 -12.90401 -12.85532 -12.77076 -12.71935 -12.60765 -12.43188 -12.33757 -12.22242 -12.00980 -11.91180 -11.80783 -11.72997 -11.44865 -11.30563 -11.07907 -10.95153 -10.69428 -9.48098 -8.20581 -6.22242 -1.24370 -0.72516 -0.10014 0.11936 1.29094 1.39760 1.41568 1.51657 1.55900 1.91521 2.26906 2.41317 2.79270 3.04930 3.14974 3.34676 3.55016 3.65019 3.77803 3.97301 4.06957 4.21392 4.51986 4.59865 4.62199 4.63534 4.75460 4.84728 4.94062 5.02399 5.06688 5.25426 5.30448 5.38120 5.47712 5.51267 5.53942 5.61205 5.66153 5.77027 6.29991 6.38514 6.45729 6.85535 6.93254 7.40610 8.95418 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017571 B = 0.003071 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.109846 B = 9115.289222 C =10469.008612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.061 4.061 3 C -0.127 4.127 4 C 0.002 3.998 5 C -0.507 4.507 6 H 0.045 0.955 7 C 0.002 3.998 8 N -0.955 5.955 9 Si 0.941 3.059 10 H -0.271 1.271 11 H -0.293 1.293 12 H -0.241 1.241 13 C 0.137 3.863 14 N -0.674 5.674 15 C 0.481 3.519 16 N -0.537 5.537 17 C 0.278 3.722 18 C -0.250 4.250 19 C 0.557 3.443 20 O -0.548 6.548 21 O -0.496 6.496 22 C 0.096 3.904 23 C -0.187 4.187 24 N 0.042 4.958 25 O -0.150 6.150 26 O -0.193 6.193 27 H 0.056 0.944 28 H 0.044 0.956 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.024 0.976 34 H 0.022 0.978 35 H 0.262 0.738 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.419 0.581 39 H 0.228 0.772 40 H 0.440 0.560 41 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.288 -7.823 26.043 27.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.062 4.062 3 C -0.184 4.184 4 C -0.036 4.036 5 C -0.545 4.545 6 H 0.063 0.937 7 C -0.194 4.194 8 N -0.597 5.597 9 Si 0.765 3.235 10 H -0.196 1.196 11 H -0.219 1.219 12 H -0.165 1.165 13 C 0.014 3.986 14 N -0.301 5.301 15 C 0.237 3.763 16 N -0.256 5.256 17 C 0.114 3.886 18 C -0.257 4.257 19 C 0.402 3.598 20 O -0.440 6.440 21 O -0.310 6.310 22 C 0.070 3.930 23 C -0.279 4.279 24 N 0.557 4.443 25 O -0.371 6.371 26 O -0.398 6.398 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.042 0.958 34 H 0.041 0.959 35 H 0.071 0.929 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.262 0.738 39 H 0.244 0.756 40 H 0.304 0.696 41 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 6.831 -8.487 24.711 27.006 hybrid contribution -0.669 0.654 0.370 1.006 sum 6.161 -7.833 25.081 26.989 Atomic orbital electron populations 1.21744 0.94412 1.01571 1.00839 1.20616 0.96170 0.95860 0.93536 1.21725 1.00676 0.95451 1.00534 1.19517 0.96369 0.95595 0.92085 1.21383 1.30382 1.12296 0.90408 0.93708 1.25925 0.97551 1.00251 0.95708 1.70066 1.48189 1.42896 0.98532 0.85802 0.79714 0.79827 0.78147 1.19627 1.21939 1.16473 1.21723 0.99846 0.96018 0.80982 1.45671 1.50871 1.30817 1.02732 1.18358 0.86315 0.87063 0.84609 1.68006 1.16350 1.12648 1.28561 1.24010 0.88605 0.92402 0.83622 1.19553 1.08581 1.03811 0.93789 1.19843 0.75416 0.77087 0.87486 1.90945 1.54792 1.60288 1.37978 1.84457 1.57884 1.46605 1.42053 1.21001 0.87459 0.89056 0.95463 1.20925 1.08996 1.01182 0.96817 1.43523 0.99823 1.01329 0.99596 1.94545 1.76096 1.28032 1.38404 1.94535 1.34164 1.85256 1.25889 0.92524 0.93695 0.92808 0.92704 0.93488 0.93287 0.95754 0.95936 0.92912 0.89738 0.89832 0.73772 0.75573 0.69637 0.80949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.41 8.05 71.98 0.58 -3.83 16 2 C -0.06 -2.07 0.54 -52.18 -0.03 -2.10 16 3 C -0.13 -4.29 8.05 71.98 0.58 -3.71 16 4 C 0.00 0.09 3.11 29.85 0.09 0.18 16 5 C -0.51 -26.85 8.20 25.60 0.21 -26.64 16 6 H 0.04 2.63 5.92 -2.91 -0.02 2.61 16 7 C 0.00 0.09 5.47 84.65 0.46 0.55 16 8 N -0.96 -58.50 13.96 21.45 0.30 -58.20 16 9 Si 0.94 42.31 27.47 68.60 1.88 44.19 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 12 H -0.24 -9.81 6.54 99.48 0.65 -9.16 16 13 C 0.14 3.67 4.56 86.38 0.39 4.06 16 14 N -0.67 -16.86 4.87 -345.18 -1.68 -18.54 16 15 C 0.48 10.76 7.43 133.25 0.99 11.75 16 16 N -0.54 -9.99 9.54 -192.29 -1.84 -11.82 16 17 C 0.28 3.32 10.79 85.07 0.92 4.23 16 18 C -0.25 -3.41 5.89 -20.00 -0.12 -3.53 16 19 C 0.56 6.95 8.27 70.24 0.58 7.53 16 20 O -0.55 -10.66 17.19 19.81 0.34 -10.32 16 21 O -0.50 -2.37 12.70 -56.70 -0.72 -3.09 16 22 C 0.10 1.69 9.27 22.47 0.21 1.90 16 23 C -0.19 -4.13 6.50 36.33 0.24 -3.89 16 24 N 0.04 1.12 4.29 -46.57 -0.20 0.92 16 25 O -0.15 -4.08 18.96 18.88 0.36 -3.72 16 26 O -0.19 -5.62 16.72 18.89 0.32 -5.30 16 27 H 0.06 1.72 6.86 -2.38 -0.02 1.70 16 28 H 0.04 1.81 6.62 -2.39 -0.02 1.80 16 29 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.05 1.88 6.62 -2.39 -0.02 1.86 16 32 H 0.05 1.44 6.86 -2.39 -0.02 1.42 16 33 H 0.02 1.00 7.20 -2.39 -0.02 0.98 16 34 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16 35 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 36 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.42 11.13 3.68 -92.70 -0.34 10.79 16 39 H 0.23 0.93 7.61 -2.91 -0.02 0.91 16 40 H 0.44 -1.52 9.11 -74.06 -0.67 -2.19 16 41 H 0.17 2.88 7.70 -2.91 -0.02 2.85 16 Total: -1.00 -70.38 349.21 3.91 -66.47 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.04 Total: 12.92 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: 5.11 Total: -13.50 kcal Atomic # 7 Polarization: -84.23 SS G_CDS: -3.42 Total: -87.64 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: 0.29 Total: -22.43 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 1.88 Total: 44.19 kcal Total: -70.38 3.91 -66.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590656103.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.342 kcal (2) G-P(sol) polarization free energy of solvation -70.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds