Wall clock time and date at job start Tue Mar 31 2020 14:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47059 * 2 1 4 4 C 1.53005 * 109.47189 * 240.00396 * 2 1 3 5 5 C 1.50695 * 109.47136 * 59.99798 * 4 2 1 6 6 H 1.08002 * 120.00191 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99958 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99973 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00184 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47301 * 59.99448 * 9 7 5 11 11 H 1.48489 * 109.47222 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46475 * 299.99688 * 9 7 5 13 13 C 1.52995 * 109.47409 * 120.00383 * 2 1 3 14 14 N 1.46500 * 109.47049 * 300.00084 * 13 2 1 15 15 C 1.39024 * 120.00347 * 180.02562 * 14 13 2 16 16 N 1.32348 * 119.64471 * 0.31114 * 15 14 13 17 17 C 1.31886 * 121.96202 * 180.31565 * 16 15 14 18 18 C 1.37995 * 121.00073 * 359.65953 * 17 16 15 19 19 C 1.40010 * 119.16916 * 0.02562 * 18 17 16 20 20 C 1.48062 * 120.88609 * 179.97438 * 19 18 17 21 21 O 1.21428 * 119.99982 * 180.02562 * 20 19 18 22 22 O 1.34667 * 119.99873 * 0.02562 * 20 19 18 23 23 C 1.39086 * 119.64382 * 180.02562 * 15 14 13 24 24 N 1.48020 * 120.53427 * 359.97438 * 23 15 14 25 25 O 1.21803 * 119.99894 * 269.72450 * 24 23 15 26 26 O 1.21799 * 119.99903 * 89.45349 * 24 23 15 27 27 H 1.08996 * 109.47185 * 299.99307 * 1 2 3 28 28 H 1.09000 * 109.47182 * 60.00417 * 1 2 3 29 29 H 1.09008 * 109.47093 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47280 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.47445 * 300.00079 * 3 2 1 32 32 H 1.08999 * 109.47063 * 60.00350 * 3 2 1 33 33 H 1.09004 * 109.47111 * 179.97438 * 4 2 1 34 34 H 1.08998 * 109.46683 * 299.99713 * 4 2 1 35 35 H 0.96993 * 119.99800 * 180.02562 * 8 7 5 36 36 H 1.09004 * 109.47266 * 180.02562 * 13 2 1 37 37 H 1.08998 * 109.47422 * 59.99699 * 13 2 1 38 38 H 0.97006 * 119.99853 * 359.97438 * 14 13 2 39 39 H 1.07992 * 119.49958 * 179.67735 * 17 16 15 40 40 H 1.08000 * 120.41242 * 180.02562 * 18 17 16 41 41 H 0.96702 * 117.00141 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0107 -2.4797 6 1 0.9170 0.8676 -2.3806 7 6 1.8703 -0.4820 -3.7320 8 7 2.6264 -1.5513 -3.8527 9 14 1.2482 0.3990 -5.2573 10 1 1.7441 1.7988 -5.2573 11 1 1.7431 -0.3010 -6.4697 12 1 -0.2368 0.3999 -5.2571 13 6 2.0400 -0.7213 1.2491 14 7 1.5517 -0.0308 2.4454 15 6 1.8880 -0.5054 3.7080 16 7 2.6548 -1.5782 3.8213 17 6 2.9968 -2.0710 4.9958 18 6 2.5704 -1.4784 6.1668 19 6 1.7622 -0.3371 6.0990 20 6 1.2827 0.3290 7.3313 21 8 0.5821 1.3178 7.2538 22 8 1.6236 -0.1617 8.5382 23 6 1.4198 0.1556 4.8387 24 7 0.5681 1.3591 4.7074 25 8 1.0784 2.4640 4.6587 26 8 -0.6428 1.2441 4.6432 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.1300 -0.7208 -1.2495 34 1 1.6767 -1.7488 -1.2493 35 1 2.8608 -1.8826 -4.7337 36 1 3.1300 -0.7209 1.2493 37 1 1.6767 -1.7489 1.2492 38 1 0.9942 0.7581 2.3564 39 1 3.6202 -2.9516 5.0419 40 1 2.8565 -1.8898 7.1235 41 1 1.2863 0.3069 9.3139 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590656648.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:21 Heat of formation + Delta-G solvation = -54.459914 kcal Electronic energy + Delta-G solvation = -27607.214092 eV Core-core repulsion = 23490.791845 eV Total energy + Delta-G solvation = -4116.422247 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.43395 -41.01604 -40.27362 -37.98967 -36.82222 -36.45363 -35.03165 -33.60952 -32.47634 -30.68784 -27.40899 -27.16092 -26.60981 -26.56295 -25.10175 -23.28798 -22.93718 -21.74967 -19.71218 -19.19183 -18.77339 -18.39886 -18.19153 -17.67996 -16.73376 -16.43977 -16.39577 -16.02506 -15.28374 -15.27636 -14.67860 -14.46759 -14.17946 -14.01835 -13.46650 -13.13807 -12.89172 -12.63492 -12.27319 -12.11761 -11.65758 -11.59551 -11.45091 -11.36361 -11.07700 -11.06513 -10.91923 -10.88776 -10.75091 -10.61736 -10.55094 -10.33838 -10.24894 -9.93884 -9.32356 -9.03297 -8.41343 -8.33925 -6.05892 -4.07337 -0.35714 0.46777 0.51300 1.20326 1.87098 2.01299 2.70414 3.03357 3.29910 3.34951 3.37145 3.77849 3.98921 4.07480 4.29890 4.41437 4.57587 4.93943 5.13012 5.25522 5.29512 5.44381 5.56634 5.62674 5.72236 5.99441 6.03630 6.08118 6.22393 6.24961 6.46915 6.54404 6.65301 6.76481 6.94368 6.97330 7.01357 7.10125 7.47608 7.53919 7.56556 7.65052 7.91937 8.33339 8.96641 9.56351 11.05489 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.025628 B = 0.002886 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.299410 B = 9700.930108 C =10478.607302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.075 4.075 3 C -0.130 4.130 4 C 0.040 3.960 5 C -0.514 4.514 6 H 0.059 0.941 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.133 3.867 14 N -0.693 5.693 15 C 0.456 3.544 16 N -0.494 5.494 17 C 0.191 3.809 18 C -0.183 4.183 19 C 0.011 3.989 20 C 0.522 3.478 21 O -0.486 6.486 22 O -0.498 6.498 23 C -0.120 4.120 24 N 0.034 4.966 25 O -0.132 6.132 26 O -0.132 6.132 27 H 0.026 0.974 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.026 0.974 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.261 0.739 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.411 0.589 39 H 0.185 0.815 40 H 0.166 0.834 41 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.058 -1.541 23.714 23.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.076 4.076 3 C -0.187 4.187 4 C 0.002 3.998 5 C -0.552 4.552 6 H 0.077 0.923 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 C 0.011 3.989 14 N -0.320 5.320 15 C 0.216 3.784 16 N -0.213 5.213 17 C 0.029 3.971 18 C -0.207 4.207 19 C 0.001 3.999 20 C 0.363 3.637 21 O -0.373 6.373 22 O -0.310 6.310 23 C -0.210 4.210 24 N 0.565 4.435 25 O -0.355 6.355 26 O -0.355 6.355 27 H 0.045 0.955 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.045 0.955 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.250 0.750 39 H 0.202 0.798 40 H 0.184 0.816 41 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 1.861 -2.659 22.263 22.498 hybrid contribution -1.198 1.681 0.371 2.097 sum 0.663 -0.978 22.634 22.665 Atomic orbital electron populations 1.21789 0.95010 1.01353 1.00533 1.20990 0.95722 0.96047 0.94798 1.21790 1.00656 0.95709 1.00528 1.19066 0.96347 0.95164 0.89178 1.21127 1.31445 1.12177 0.90453 0.92254 1.24996 0.95210 0.95043 0.99098 1.69943 1.36819 1.22993 1.23657 0.86692 0.79222 0.79808 0.82510 1.20258 1.21349 1.20253 1.21900 0.99330 0.96098 0.81580 1.45465 1.52752 1.31442 1.02349 1.17833 0.87990 0.88000 0.84611 1.67576 1.14592 1.10602 1.28555 1.23009 0.91943 0.96614 0.85535 1.22194 1.00714 0.95720 1.02075 1.18754 0.97364 0.95825 0.87926 1.20532 0.77498 0.81627 0.84004 1.91050 1.34123 1.24476 1.87636 1.84476 1.71885 1.58582 1.16068 1.21184 1.09563 0.95342 0.94925 1.43010 1.01084 1.01627 0.97815 1.94563 1.77295 1.11821 1.51811 1.94563 0.96049 1.93184 1.51717 0.95460 0.90977 0.93119 0.93118 0.90976 0.95473 0.96235 0.96232 0.92924 0.90833 0.90838 0.74997 0.79782 0.81614 0.71578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 8.05 37.15 0.30 -2.04 16 2 C -0.08 -1.40 0.54 -154.51 -0.08 -1.48 16 3 C -0.13 -2.33 8.05 37.16 0.30 -2.04 16 4 C 0.04 0.94 4.04 -27.88 -0.11 0.83 16 5 C -0.51 -13.43 7.65 -34.44 -0.26 -13.69 16 6 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.89 -25.85 13.29 55.43 0.74 -25.11 16 9 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.13 2.16 4.58 -4.04 -0.02 2.14 16 14 N -0.69 -10.38 5.10 -60.44 -0.31 -10.68 16 15 C 0.46 6.30 7.48 -155.06 -1.16 5.14 16 16 N -0.49 -5.92 9.53 -12.48 -0.12 -6.04 16 17 C 0.19 1.47 11.16 -17.62 -0.20 1.27 16 18 C -0.18 -1.33 9.70 -39.01 -0.38 -1.71 16 19 C 0.01 0.12 5.90 -104.70 -0.62 -0.49 16 20 C 0.52 5.52 8.30 34.76 0.29 5.81 16 21 O -0.49 -6.96 15.52 -24.25 -0.38 -7.34 16 22 O -0.50 -2.96 12.78 -40.40 -0.52 -3.48 16 23 C -0.12 -1.65 6.22 -79.13 -0.49 -2.14 16 24 N 0.03 0.55 1.73 34.36 0.06 0.61 16 25 O -0.13 -2.24 19.01 -32.25 -0.61 -2.86 16 26 O -0.13 -2.25 19.03 -32.14 -0.61 -2.86 16 27 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 28 H 0.07 1.39 6.62 -51.93 -0.34 1.05 16 29 H 0.05 0.91 8.14 -51.92 -0.42 0.49 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 1.39 6.62 -51.93 -0.34 1.05 16 32 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.41 6.32 5.39 -40.82 -0.22 6.10 16 39 H 0.19 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.17 0.65 7.71 -52.49 -0.40 0.25 16 41 H 0.42 0.65 9.11 45.56 0.42 1.07 16 LS Contribution 354.03 15.07 5.34 5.34 Total: -1.00 -33.23 354.03 -7.97 -41.20 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -4.00 Total: 2.11 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -2.53 Total: -6.92 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 0.37 Total: -41.23 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -2.12 Total: -16.53 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.23 -7.97 -41.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590656648.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.257 kcal (2) G-P(sol) polarization free energy of solvation -33.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds