Wall clock time and date at job start Tue Mar 31 2020 14:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47172 * 2 1 4 4 C 1.52997 * 109.47383 * 240.00103 * 2 1 3 5 5 C 1.50699 * 109.47137 * 59.99727 * 4 2 1 6 6 H 1.07998 * 119.99778 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00299 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99976 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00123 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47029 * 59.99968 * 9 7 5 11 11 H 1.48500 * 109.47006 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.46835 * 300.00154 * 9 7 5 13 13 C 1.53005 * 109.47223 * 120.00154 * 2 1 3 14 14 N 1.46503 * 109.46972 * 300.00097 * 13 2 1 15 15 C 1.38977 * 119.99695 * 179.97438 * 14 13 2 16 16 N 1.32052 * 119.63889 * 354.63694 * 15 14 13 17 17 C 1.32881 * 121.53502 * 180.02562 * 16 15 14 18 18 C 1.48053 * 119.68497 * 179.97438 * 17 16 15 19 19 O 1.21432 * 119.99706 * 179.97438 * 18 17 16 20 20 O 1.34682 * 119.99798 * 359.97438 * 18 17 16 21 21 C 1.39175 * 120.63230 * 0.02562 * 17 16 15 22 22 C 1.38794 * 119.22105 * 359.97438 * 21 17 16 23 23 C 1.38296 * 118.58341 * 0.02562 * 22 21 17 24 24 N 1.48016 * 120.34768 * 179.97438 * 23 22 21 25 25 O 1.21800 * 120.00167 * 142.57083 * 24 23 22 26 26 O 1.21811 * 119.99807 * 322.56414 * 24 23 22 27 27 H 1.09001 * 109.47113 * 299.99814 * 1 2 3 28 28 H 1.08998 * 109.47579 * 59.99992 * 1 2 3 29 29 H 1.09000 * 109.47331 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47328 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47359 * 300.00223 * 3 2 1 32 32 H 1.09001 * 109.46949 * 60.00086 * 3 2 1 33 33 H 1.09004 * 109.47552 * 180.02562 * 4 2 1 34 34 H 1.09004 * 109.47483 * 300.00134 * 4 2 1 35 35 H 0.96992 * 120.00054 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.47283 * 180.02562 * 13 2 1 37 37 H 1.09000 * 109.46834 * 59.99858 * 13 2 1 38 38 H 0.96998 * 119.99904 * 0.02562 * 14 13 2 39 39 H 0.96698 * 117.00003 * 179.97438 * 20 18 17 40 40 H 1.07991 * 120.38890 * 179.97438 * 21 17 16 41 41 H 1.08001 * 120.70683 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8703 -0.4821 -3.7320 8 7 2.6256 -1.5520 -3.8527 9 14 1.2482 0.3989 -5.2572 10 1 1.7442 1.7986 -5.2572 11 1 1.7421 -0.3019 -6.4697 12 1 -0.2367 0.3999 -5.2570 13 6 2.0400 -0.7213 1.2493 14 7 1.5516 -0.0307 2.4455 15 6 1.8870 -0.5059 3.7077 16 7 2.5559 -1.6386 3.8225 17 6 2.8955 -2.1278 5.0104 18 6 3.6452 -3.4019 5.0916 19 8 3.9589 -3.8539 6.1742 20 8 3.9793 -4.0596 3.9647 21 6 2.5523 -1.4544 6.1791 22 6 1.8490 -0.2611 6.0919 23 6 1.5122 0.2184 4.8392 24 7 0.7620 1.4868 4.7008 25 8 1.0181 2.2492 3.7860 26 8 -0.1115 1.7682 5.5017 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.1300 -0.7216 -1.2490 34 1 1.6767 -1.7489 -1.2493 35 1 2.8594 -1.8837 -4.7336 36 1 3.1300 -0.7209 1.2495 37 1 1.6766 -1.7489 1.2492 38 1 0.9936 0.7577 2.3564 39 1 4.4689 -4.8870 4.0681 40 1 2.8300 -1.8558 7.1425 41 1 1.5708 0.2815 6.9833 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603591925.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:23 Heat of formation + Delta-G solvation = -58.113951 kcal Electronic energy + Delta-G solvation = -27437.399450 eV Core-core repulsion = 23320.818752 eV Total energy + Delta-G solvation = -4116.580698 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.52297 -41.19716 -40.00176 -37.99412 -36.74170 -36.57261 -34.90562 -33.61961 -32.46006 -30.71760 -27.84179 -27.15010 -26.57201 -26.46185 -24.40555 -23.73026 -22.36999 -22.21219 -19.73960 -19.32214 -18.77836 -18.32754 -18.07246 -17.73495 -16.94341 -16.47296 -16.30627 -16.12587 -15.12772 -14.70592 -14.57383 -14.47431 -14.05649 -13.96579 -13.58344 -13.16964 -12.86848 -12.58742 -12.09922 -11.97871 -11.82305 -11.53361 -11.45831 -11.41753 -11.32158 -11.04796 -10.90783 -10.89972 -10.75260 -10.61679 -10.52222 -10.33254 -10.30488 -9.90876 -9.29075 -9.00870 -8.39707 -8.34300 -6.04141 -4.05493 -0.65893 0.54702 0.70050 1.09919 1.84419 2.24899 2.70534 3.07447 3.30598 3.35714 3.37726 3.61028 3.94616 4.21382 4.35895 4.42791 4.62565 5.00651 5.16400 5.30104 5.31366 5.47653 5.48135 5.66586 5.92481 6.00477 6.06644 6.10013 6.14941 6.30361 6.47933 6.58123 6.63200 6.73808 6.97048 7.01557 7.05207 7.34065 7.40647 7.53614 7.56972 7.67989 7.93904 8.35454 8.98629 9.58017 11.07228 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013392 B = 0.003464 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.306100 B = 8080.140841 C = 9931.652361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.074 4.074 3 C -0.132 4.132 4 C 0.039 3.961 5 C -0.513 4.513 6 H 0.060 0.940 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.128 3.872 14 N -0.678 5.678 15 C 0.461 3.539 16 N -0.477 5.477 17 C 0.197 3.803 18 C 0.545 3.455 19 O -0.495 6.495 20 O -0.482 6.482 21 C -0.184 4.184 22 C 0.031 3.969 23 C -0.151 4.151 24 N 0.038 4.962 25 O -0.165 6.165 26 O -0.147 6.147 27 H 0.025 0.975 28 H 0.071 0.929 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.035 0.965 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.261 0.739 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.420 0.580 39 H 0.419 0.581 40 H 0.168 0.832 41 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.456 -1.104 20.535 20.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.074 4.074 3 C -0.189 4.189 4 C 0.002 3.998 5 C -0.551 4.551 6 H 0.078 0.922 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.006 3.994 14 N -0.308 5.308 15 C 0.216 3.784 16 N -0.199 5.199 17 C 0.054 3.946 18 C 0.385 3.615 19 O -0.381 6.381 20 O -0.292 6.292 21 C -0.209 4.209 22 C 0.005 3.995 23 C -0.244 4.244 24 N 0.557 4.443 25 O -0.375 6.375 26 O -0.366 6.366 27 H 0.044 0.956 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.054 0.946 33 H 0.038 0.962 34 H 0.037 0.963 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.264 0.736 39 H 0.278 0.722 40 H 0.185 0.815 41 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 1.059 -2.081 19.631 19.770 hybrid contribution -0.577 0.885 -0.214 1.078 sum 0.482 -1.197 19.417 19.460 Atomic orbital electron populations 1.21787 0.95222 1.01166 1.00471 1.20969 0.95550 0.96234 0.94677 1.21803 1.00608 0.95578 1.00893 1.19070 0.96378 0.95142 0.89226 1.21134 1.31397 1.12157 0.90453 0.92232 1.24994 0.95231 0.95044 0.99072 1.69945 1.36885 1.22957 1.23613 0.86701 0.79184 0.79826 0.82562 1.20247 1.21380 1.20301 1.21950 0.99405 0.96253 0.81820 1.45807 1.51390 1.31537 1.02073 1.17925 0.87500 0.87459 0.85538 1.67662 1.15724 1.10536 1.25936 1.20114 0.93315 0.92117 0.89059 1.20242 0.76253 0.83150 0.81837 1.90942 1.51111 1.66489 1.29595 1.84726 1.69507 1.39914 1.35039 1.21671 1.03621 0.95664 0.99968 1.21137 0.89609 0.93370 0.95415 1.21646 1.14296 0.91680 0.96733 1.43322 0.99628 1.01434 0.99949 1.94552 1.71524 1.45822 1.25638 1.94548 1.23533 1.80002 1.38505 0.95577 0.90956 0.93270 0.93246 0.91155 0.94613 0.96227 0.96297 0.92956 0.90803 0.90759 0.73632 0.72183 0.81475 0.81568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 8.05 37.15 0.30 -1.99 16 2 C -0.07 -1.37 0.54 -154.51 -0.08 -1.45 16 3 C -0.13 -2.34 8.05 37.16 0.30 -2.05 16 4 C 0.04 0.93 4.04 -27.88 -0.11 0.82 16 5 C -0.51 -13.38 7.65 -34.44 -0.26 -13.64 16 6 H 0.06 1.50 5.68 -52.49 -0.30 1.20 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.89 -25.84 13.29 55.43 0.74 -25.11 16 9 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 C 0.13 2.09 4.58 -4.04 -0.02 2.07 16 14 N -0.68 -9.90 4.90 -60.41 -0.30 -10.20 16 15 C 0.46 6.19 7.44 -155.21 -1.15 5.04 16 16 N -0.48 -6.26 9.32 -9.01 -0.08 -6.34 16 17 C 0.20 2.12 6.74 -83.04 -0.56 1.56 16 18 C 0.54 5.49 8.32 34.76 0.29 5.78 16 19 O -0.49 -5.46 17.10 -19.21 -0.33 -5.79 16 20 O -0.48 -4.29 13.24 -40.44 -0.54 -4.83 16 21 C -0.18 -1.53 9.63 -39.03 -0.38 -1.91 16 22 C 0.03 0.27 9.79 -39.35 -0.39 -0.12 16 23 C -0.15 -1.79 6.54 -79.46 -0.52 -2.31 16 24 N 0.04 0.51 4.29 34.20 0.15 0.66 16 25 O -0.16 -2.42 16.76 -29.46 -0.49 -2.91 16 26 O -0.15 -1.94 18.99 -29.46 -0.56 -2.50 16 27 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 28 H 0.07 1.38 6.62 -51.93 -0.34 1.03 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.34 6.62 -51.93 -0.34 1.00 16 32 H 0.03 0.56 6.86 -51.93 -0.36 0.21 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.42 6.16 3.73 -40.82 -0.15 6.01 16 39 H 0.42 1.52 9.11 45.56 0.42 1.94 16 40 H 0.17 1.01 7.63 -52.49 -0.40 0.61 16 41 H 0.17 0.94 8.05 -52.49 -0.42 0.51 16 LS Contribution 353.89 15.07 5.33 5.33 Total: -1.00 -31.14 353.89 -7.71 -38.85 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -3.93 Total: 3.60 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -2.68 Total: -6.71 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.50 Total: -40.99 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -1.92 Total: -16.03 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.14 -7.71 -38.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603591925.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.262 kcal (2) G-P(sol) polarization free energy of solvation -31.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds