Wall clock time and date at job start Tue Mar 31 2020 14:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47172 * 2 1 4 4 C 1.52997 * 109.47383 * 240.00103 * 2 1 3 5 5 C 1.50699 * 109.47137 * 59.99727 * 4 2 1 6 6 H 1.07998 * 119.99778 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00299 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99976 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00123 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47029 * 59.99968 * 9 7 5 11 11 H 1.48500 * 109.47006 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.46835 * 300.00154 * 9 7 5 13 13 C 1.53005 * 109.47223 * 120.00154 * 2 1 3 14 14 N 1.46503 * 109.46972 * 300.00097 * 13 2 1 15 15 C 1.38977 * 119.99695 * 179.97438 * 14 13 2 16 16 N 1.32052 * 119.63889 * 354.63694 * 15 14 13 17 17 C 1.32881 * 121.53502 * 180.02562 * 16 15 14 18 18 C 1.48053 * 119.68497 * 179.97438 * 17 16 15 19 19 O 1.21432 * 119.99706 * 179.97438 * 18 17 16 20 20 O 1.34682 * 119.99798 * 359.97438 * 18 17 16 21 21 C 1.39175 * 120.63230 * 0.02562 * 17 16 15 22 22 C 1.38794 * 119.22105 * 359.97438 * 21 17 16 23 23 C 1.38296 * 118.58341 * 0.02562 * 22 21 17 24 24 N 1.48016 * 120.34768 * 179.97438 * 23 22 21 25 25 O 1.21800 * 120.00167 * 142.57083 * 24 23 22 26 26 O 1.21811 * 119.99807 * 322.56414 * 24 23 22 27 27 H 1.09001 * 109.47113 * 299.99814 * 1 2 3 28 28 H 1.08998 * 109.47579 * 59.99992 * 1 2 3 29 29 H 1.09000 * 109.47331 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47328 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47359 * 300.00223 * 3 2 1 32 32 H 1.09001 * 109.46949 * 60.00086 * 3 2 1 33 33 H 1.09004 * 109.47552 * 180.02562 * 4 2 1 34 34 H 1.09004 * 109.47483 * 300.00134 * 4 2 1 35 35 H 0.96992 * 120.00054 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.47283 * 180.02562 * 13 2 1 37 37 H 1.09000 * 109.46834 * 59.99858 * 13 2 1 38 38 H 0.96998 * 119.99904 * 0.02562 * 14 13 2 39 39 H 0.96698 * 117.00003 * 179.97438 * 20 18 17 40 40 H 1.07991 * 120.38890 * 179.97438 * 21 17 16 41 41 H 1.08001 * 120.70683 * 180.02562 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8703 -0.4821 -3.7320 8 7 2.6256 -1.5520 -3.8527 9 14 1.2482 0.3989 -5.2572 10 1 1.7442 1.7986 -5.2572 11 1 1.7421 -0.3019 -6.4697 12 1 -0.2367 0.3999 -5.2570 13 6 2.0400 -0.7213 1.2493 14 7 1.5516 -0.0307 2.4455 15 6 1.8870 -0.5059 3.7077 16 7 2.5559 -1.6386 3.8225 17 6 2.8955 -2.1278 5.0104 18 6 3.6452 -3.4019 5.0916 19 8 3.9589 -3.8539 6.1742 20 8 3.9793 -4.0596 3.9647 21 6 2.5523 -1.4544 6.1791 22 6 1.8490 -0.2611 6.0919 23 6 1.5122 0.2184 4.8392 24 7 0.7620 1.4868 4.7008 25 8 1.0181 2.2492 3.7860 26 8 -0.1115 1.7682 5.5017 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.1300 -0.7216 -1.2490 34 1 1.6767 -1.7489 -1.2493 35 1 2.8594 -1.8837 -4.7336 36 1 3.1300 -0.7209 1.2495 37 1 1.6766 -1.7489 1.2492 38 1 0.9936 0.7577 2.3564 39 1 4.4689 -4.8870 4.0681 40 1 2.8300 -1.8558 7.1425 41 1 1.5708 0.2815 6.9833 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603591925.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:23 Heat of formation + Delta-G solvation = -76.954336 kcal Electronic energy + Delta-G solvation = -27438.216431 eV Core-core repulsion = 23320.818752 eV Total energy + Delta-G solvation = -4117.397679 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.49392 -42.05381 -40.85581 -39.34130 -37.78632 -37.33207 -36.16359 -34.48390 -34.36455 -31.79556 -29.06401 -28.69780 -28.04895 -27.76093 -25.45447 -25.06403 -23.70948 -23.11110 -20.72653 -20.25865 -19.80426 -19.47016 -19.06762 -18.72770 -18.36320 -17.87065 -17.25534 -17.09836 -16.50375 -16.21447 -15.78861 -15.24503 -15.18773 -15.04482 -14.71060 -14.42521 -14.28197 -14.04796 -13.97020 -12.96782 -12.86393 -12.77123 -12.74046 -12.68719 -12.49583 -12.38619 -12.36441 -12.28167 -12.24475 -12.03575 -11.89078 -11.72662 -11.45271 -11.26414 -11.00663 -10.90462 -10.50114 -9.37125 -8.14175 -6.21193 -1.54606 -0.36718 -0.14819 0.15388 1.02892 1.42832 1.44118 1.47834 1.51502 1.75837 2.23594 2.44334 2.76924 3.03071 3.20480 3.41912 3.65433 3.86704 3.89533 4.01292 4.15030 4.33492 4.42154 4.60023 4.65584 4.67385 4.80135 4.87852 5.01374 5.06066 5.12814 5.25487 5.35470 5.43943 5.47515 5.52106 5.57700 5.71345 5.75552 5.89065 6.31270 6.35629 6.45678 6.81818 6.92531 7.46224 8.97775 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013392 B = 0.003464 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.306100 B = 8080.140841 C = 9931.652361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.068 4.068 3 C -0.124 4.124 4 C 0.046 3.954 5 C -0.518 4.518 6 H 0.068 0.932 7 C 0.001 3.999 8 N -0.934 5.934 9 Si 0.954 3.046 10 H -0.269 1.269 11 H -0.289 1.289 12 H -0.269 1.269 13 C 0.148 3.852 14 N -0.688 5.688 15 C 0.448 3.552 16 N -0.502 5.502 17 C 0.180 3.820 18 C 0.550 3.450 19 O -0.505 6.505 20 O -0.491 6.491 21 C -0.157 4.157 22 C 0.047 3.953 23 C -0.155 4.155 24 N 0.040 4.960 25 O -0.203 6.203 26 O -0.129 6.129 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.058 0.942 33 H -0.008 1.008 34 H -0.008 1.008 35 H 0.260 0.740 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.419 0.581 39 H 0.439 0.561 40 H 0.199 0.801 41 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.243 -0.416 22.975 22.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.068 4.068 3 C -0.181 4.181 4 C 0.009 3.991 5 C -0.556 4.556 6 H 0.086 0.914 7 C -0.196 4.196 8 N -0.575 5.575 9 Si 0.779 3.221 10 H -0.194 1.194 11 H -0.215 1.215 12 H -0.194 1.194 13 C 0.025 3.975 14 N -0.321 5.321 15 C 0.204 3.796 16 N -0.224 5.224 17 C 0.039 3.961 18 C 0.391 3.609 19 O -0.393 6.393 20 O -0.304 6.304 21 C -0.182 4.182 22 C 0.021 3.979 23 C -0.248 4.248 24 N 0.557 4.443 25 O -0.405 6.405 26 O -0.355 6.355 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.011 0.989 34 H 0.011 0.989 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.263 0.737 39 H 0.302 0.698 40 H 0.216 0.784 41 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 0.411 -1.390 22.053 22.101 hybrid contribution -0.341 0.566 -0.762 1.009 sum 0.071 -0.824 21.291 21.307 Atomic orbital electron populations 1.21692 0.94243 1.01039 1.00990 1.20760 0.96243 0.96312 0.93486 1.21706 1.00198 0.94918 1.01282 1.18903 0.94557 0.94199 0.91473 1.21546 1.30659 1.12122 0.91275 0.91432 1.25848 0.95599 0.95807 1.02377 1.70085 1.38574 1.24696 1.24161 0.85670 0.78910 0.78815 0.78684 1.19382 1.21464 1.19398 1.21441 0.98560 0.95520 0.81969 1.45480 1.52731 1.31852 1.01993 1.17989 0.88186 0.88012 0.85389 1.67593 1.16430 1.10837 1.27558 1.20474 0.93673 0.92674 0.89272 1.20129 0.75955 0.82977 0.81804 1.90938 1.51722 1.66800 1.29845 1.84696 1.69694 1.41184 1.34839 1.22049 1.01217 0.94592 1.00292 1.21631 0.87954 0.93083 0.95253 1.21807 1.14511 0.90965 0.97487 1.43486 0.99520 1.01694 0.99634 1.94562 1.72533 1.46843 1.26572 1.94524 1.23047 1.79985 1.37957 0.93009 0.92347 0.93736 0.93831 0.92543 0.92277 0.98925 0.98939 0.93105 0.91865 0.91737 0.73742 0.69808 0.78393 0.77816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.34 8.05 71.98 0.58 -3.76 16 2 C -0.07 -2.57 0.54 -52.18 -0.03 -2.60 16 3 C -0.12 -4.44 8.05 71.98 0.58 -3.86 16 4 C 0.05 2.29 4.04 29.85 0.12 2.41 16 5 C -0.52 -27.59 7.65 25.60 0.20 -27.39 16 6 H 0.07 3.43 5.68 -2.91 -0.02 3.41 16 7 C 0.00 0.06 5.46 84.66 0.46 0.52 16 8 N -0.93 -55.60 13.29 21.45 0.28 -55.31 16 9 Si 0.95 43.43 29.54 68.60 2.03 45.45 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 11 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 13 C 0.15 4.99 4.58 86.38 0.40 5.39 16 14 N -0.69 -19.95 4.90 -345.05 -1.69 -21.64 16 15 C 0.45 11.61 7.44 133.26 0.99 12.61 16 16 N -0.50 -12.79 9.32 -182.42 -1.70 -14.49 16 17 C 0.18 3.52 6.74 41.82 0.28 3.80 16 18 C 0.55 10.22 8.32 70.43 0.59 10.81 16 19 O -0.50 -10.06 17.10 20.06 0.34 -9.72 16 20 O -0.49 -8.33 13.24 -55.91 -0.74 -9.08 16 21 C -0.16 -2.03 9.63 22.63 0.22 -1.81 16 22 C 0.05 0.62 9.79 22.42 0.22 0.84 16 23 C -0.16 -3.34 6.54 36.69 0.24 -3.10 16 24 N 0.04 0.99 4.29 -45.72 -0.20 0.79 16 25 O -0.20 -5.76 16.76 18.89 0.32 -5.44 16 26 O -0.13 -3.07 18.99 18.87 0.36 -2.71 16 27 H 0.05 1.56 6.86 -2.39 -0.02 1.54 16 28 H 0.06 2.21 6.62 -2.39 -0.02 2.20 16 29 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.06 2.16 6.62 -2.39 -0.02 2.14 16 32 H 0.06 1.84 6.86 -2.39 -0.02 1.82 16 33 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 34 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 35 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 36 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.42 12.06 3.73 -92.71 -0.35 11.72 16 39 H 0.44 2.74 9.11 -74.06 -0.67 2.07 16 40 H 0.20 1.41 7.63 -2.92 -0.02 1.39 16 41 H 0.20 1.18 8.05 -2.91 -0.02 1.15 16 Total: -1.00 -68.69 353.89 3.93 -64.76 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.09 Total: 13.54 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: 4.84 Total: -6.15 kcal Atomic # 7 Polarization: -87.35 SS G_CDS: -3.30 Total: -90.65 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: 0.28 Total: -26.95 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -68.69 3.93 -64.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603591925.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.193 kcal (2) G-P(sol) polarization free energy of solvation -68.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds