Wall clock time and date at job start Tue Mar 31 2020 13:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.47283 * 2 1 4 4 C 1.53002 * 109.46549 * 240.00405 * 2 1 3 5 5 S 1.81403 * 109.46944 * 120.00463 * 2 1 3 6 6 O 1.42098 * 109.46906 * 303.60953 * 5 2 1 7 7 C 1.81402 * 103.00066 * 59.99810 * 5 2 1 8 8 C 1.53000 * 109.46721 * 179.97438 * 7 5 2 9 9 N 1.46497 * 109.46689 * 179.97438 * 8 7 5 10 10 C 1.34775 * 120.00156 * 179.97438 * 9 8 7 11 11 O 1.21557 * 119.99667 * 359.97438 * 10 9 8 12 12 C 1.47886 * 120.00619 * 180.02562 * 10 9 8 13 13 C 1.39924 * 120.01958 * 359.72129 * 12 10 9 14 14 C 1.38328 * 120.35274 * 179.74687 * 13 12 10 15 15 C 1.37748 * 120.41594 * 0.55369 * 14 13 12 16 16 C 1.40751 * 120.03689 * 359.70627 * 15 14 13 17 17 C 1.41441 * 120.17695 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99688 * 24.44097 * 17 16 15 19 19 C 1.39939 * 120.00209 * 204.43599 * 17 16 15 20 20 N 1.30827 * 119.99474 * 17.87651 * 19 17 16 21 21 Si 1.86796 * 120.00050 * 197.88272 * 19 17 16 22 22 H 1.48493 * 109.47288 * 60.00027 * 21 19 17 23 23 H 1.48497 * 109.46860 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47267 * 299.99658 * 21 19 17 25 25 C 1.38996 * 120.02635 * 180.02562 * 12 10 9 26 26 H 1.08996 * 109.46666 * 299.99683 * 1 2 3 27 27 H 1.09002 * 109.46668 * 59.99323 * 1 2 3 28 28 H 1.08999 * 109.47322 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46822 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47216 * 300.00299 * 3 2 1 31 31 H 1.08999 * 109.46695 * 60.00116 * 3 2 1 32 32 H 1.09007 * 109.47130 * 299.99610 * 4 2 1 33 33 H 1.08994 * 109.47656 * 60.00505 * 4 2 1 34 34 H 1.09006 * 109.46752 * 180.02562 * 4 2 1 35 35 H 1.08993 * 109.46944 * 299.99603 * 7 5 2 36 36 H 1.09004 * 109.46718 * 59.99879 * 7 5 2 37 37 H 1.09002 * 109.47080 * 299.99636 * 8 7 5 38 38 H 1.08992 * 109.47082 * 59.99948 * 8 7 5 39 39 H 0.97005 * 120.00334 * 359.97438 * 9 8 7 40 40 H 1.07998 * 119.82445 * 359.97438 * 13 12 10 41 41 H 1.08006 * 119.79261 * 180.27831 * 14 13 12 42 42 H 1.08001 * 119.98363 * 179.71754 * 15 14 13 43 43 H 0.97001 * 119.99207 * 179.97438 * 20 19 17 44 44 H 1.07993 * 120.20501 * 359.94843 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 16 2.1347 -0.8553 1.4811 6 8 1.5934 -0.2359 2.6398 7 6 1.4374 -2.5205 1.3039 8 6 1.8634 -3.3811 2.4951 9 7 1.2998 -4.7257 2.3523 10 6 1.5444 -5.6620 3.2904 11 8 2.2330 -5.3909 4.2547 12 6 0.9760 -7.0197 3.1461 13 6 0.1793 -7.3309 2.0387 14 6 -0.3516 -8.6001 1.8942 15 6 -0.1118 -9.5686 2.8438 16 6 0.6827 -9.2724 3.9672 17 6 0.9313 -10.2649 4.9439 18 1 0.8729 -11.3101 4.6785 19 6 1.2530 -9.8924 6.2539 20 7 0.9900 -8.6812 6.6727 21 14 2.0579 -11.1245 7.4043 22 1 3.3535 -11.5661 6.8285 23 1 2.2950 -10.4872 8.7245 24 1 1.1656 -12.2993 7.5742 25 6 1.2275 -7.9855 4.1135 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9564 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2494 33 1 1.6767 -0.2073 -2.1393 34 1 3.1300 -0.7216 -1.2492 35 1 0.3498 -2.4574 1.2714 36 1 1.8031 -2.9712 0.3812 37 1 2.9512 -3.4442 2.5272 38 1 1.4982 -2.9305 3.4179 39 1 0.7506 -4.9423 1.5826 40 1 -0.0192 -6.5774 1.2910 41 1 -0.9616 -8.8318 1.0335 42 1 -0.5335 -10.5559 2.7263 43 1 1.2126 -8.4232 7.5809 44 1 1.8384 -7.7484 4.9719 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171806216.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:06 Heat of formation + Delta-G solvation = -96.564410 kcal Electronic energy + Delta-G solvation = -24247.501030 eV Core-core repulsion = 20675.546209 eV Total energy + Delta-G solvation = -3571.954821 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.91041 -38.85943 -37.15589 -36.91548 -36.38359 -35.58706 -32.67262 -31.33929 -30.99879 -28.37584 -28.08199 -27.21626 -25.13316 -23.46366 -22.74491 -21.70434 -21.30820 -19.56231 -18.19339 -18.00721 -17.39531 -16.93829 -16.78211 -16.53171 -16.32271 -15.79361 -15.49803 -15.34974 -15.13796 -15.02206 -14.75545 -14.38491 -14.27302 -14.00328 -13.56788 -13.47069 -13.20231 -13.09171 -12.95895 -12.81980 -12.79605 -12.71615 -12.53083 -12.34374 -12.20547 -11.93390 -11.92169 -11.85850 -11.52084 -11.12418 -11.07044 -10.68340 -10.20938 -9.48321 -9.39231 -9.21496 -8.67323 -6.38911 0.36616 0.43538 1.00837 1.35878 1.47842 1.50643 1.60788 2.07774 2.18815 2.31309 2.77816 2.80178 3.64121 3.69128 3.74407 3.79972 3.93562 4.05586 4.18762 4.39760 4.43515 4.56878 4.59066 4.62599 4.68951 4.83092 4.83348 4.87305 4.92935 5.01865 5.05933 5.08185 5.17043 5.18958 5.27208 5.30434 5.38894 5.50868 5.51472 5.85881 5.91661 6.04993 6.28192 6.49872 6.67330 6.87041 6.94274 7.28051 8.29185 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.024849 B = 0.002388 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.541976 B =11723.837306 C =12530.572449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.375 4.375 3 C -0.130 4.130 4 C -0.127 4.127 5 S 1.294 4.706 6 O -0.911 6.911 7 C -0.456 4.456 8 C 0.135 3.865 9 N -0.708 5.708 10 C 0.557 3.443 11 O -0.590 6.590 12 C -0.139 4.139 13 C -0.197 4.197 14 C -0.095 4.095 15 C -0.217 4.217 16 C 0.066 3.934 17 C -0.497 4.497 18 H 0.086 0.914 19 C 0.028 3.972 20 N -0.827 5.827 21 Si 0.984 3.016 22 H -0.258 1.258 23 H -0.274 1.274 24 H -0.252 1.252 25 C -0.133 4.133 26 H 0.029 0.971 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.033 0.967 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.171 0.829 37 H 0.090 0.910 38 H 0.033 0.967 39 H 0.416 0.584 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.109 0.891 43 H 0.286 0.714 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.114 15.030 -19.416 24.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.475 4.475 3 C -0.189 4.189 4 C -0.185 4.185 5 S 1.494 4.506 6 O -0.906 6.906 7 C -0.592 4.592 8 C 0.010 3.990 9 N -0.363 5.363 10 C 0.347 3.653 11 O -0.471 6.471 12 C -0.142 4.142 13 C -0.217 4.217 14 C -0.113 4.113 15 C -0.237 4.237 16 C 0.063 3.937 17 C -0.526 4.526 18 H 0.104 0.896 19 C -0.187 4.187 20 N -0.453 5.453 21 Si 0.804 3.196 22 H -0.183 1.183 23 H -0.198 1.198 24 H -0.176 1.176 25 C -0.154 4.154 26 H 0.048 0.952 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.111 0.889 30 H 0.097 0.903 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.189 0.811 37 H 0.108 0.892 38 H 0.051 0.949 39 H 0.254 0.746 40 H 0.157 0.843 41 H 0.158 0.842 42 H 0.127 0.873 43 H 0.096 0.904 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.143 15.787 -17.788 24.332 hybrid contribution -2.568 -0.343 0.940 2.756 sum 2.575 15.444 -16.847 22.999 Atomic orbital electron populations 1.22008 0.94088 1.02523 1.02259 1.27089 1.01324 1.05841 1.13211 1.21630 1.03046 0.91948 1.02240 1.21729 1.03525 0.99999 0.93275 1.69893 1.14230 0.84007 0.82515 1.93029 1.80542 1.73357 1.43703 1.27998 1.09874 1.16493 1.04834 1.20875 0.99838 0.81521 0.96726 1.45745 1.54009 1.10864 1.25680 1.18828 0.79153 0.85672 0.81680 1.90683 1.41233 1.82189 1.33023 1.19766 1.03371 0.92574 0.98496 1.20863 1.04418 0.98003 0.98392 1.20936 0.99113 0.92839 0.98431 1.21417 1.03885 1.00116 0.98246 1.17962 0.89986 0.92538 0.93170 1.19851 1.43800 0.94776 0.94169 0.89638 1.26897 0.93313 0.97766 1.00738 1.69897 1.35258 1.21278 1.18840 0.85224 0.79602 0.78396 0.76371 1.18267 1.19850 1.17556 1.21469 1.01460 0.94206 0.98246 0.95156 0.90517 0.91703 0.88858 0.90261 0.94811 0.90728 0.91137 0.88300 0.88873 0.81135 0.89227 0.94870 0.74556 0.84331 0.84200 0.87293 0.90351 0.88373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 8.29 71.98 0.60 -1.62 16 2 C -0.37 -4.01 0.94 -10.79 -0.01 -4.02 16 3 C -0.13 -1.36 8.48 71.98 0.61 -0.75 16 4 C -0.13 -0.48 8.32 71.98 0.60 0.12 16 5 S 1.29 20.04 12.09 -56.49 -0.68 19.36 16 6 O -0.91 -28.44 18.10 -148.98 -2.70 -31.14 16 7 C -0.46 -7.03 5.15 71.98 0.37 -6.66 16 8 C 0.13 3.58 5.68 86.38 0.49 4.07 16 9 N -0.71 -22.01 5.51 -465.94 -2.57 -24.58 16 10 C 0.56 24.77 7.77 86.80 0.67 25.44 16 11 O -0.59 -31.41 16.33 -3.90 -0.06 -31.47 16 12 C -0.14 -6.58 5.87 -20.13 -0.12 -6.70 16 13 C -0.20 -7.58 9.55 22.70 0.22 -7.37 16 14 C -0.10 -3.70 10.01 22.18 0.22 -3.48 16 15 C -0.22 -10.08 9.78 22.77 0.22 -9.86 16 16 C 0.07 3.59 5.57 -21.32 -0.12 3.47 16 17 C -0.50 -27.21 9.05 23.47 0.21 -27.00 16 18 H 0.09 4.38 7.91 -2.91 -0.02 4.36 16 19 C 0.03 1.46 5.14 85.25 0.44 1.90 16 20 N -0.83 -47.13 10.95 21.83 0.24 -46.89 16 21 Si 0.98 40.06 29.60 68.60 2.03 42.09 16 22 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 23 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 24 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 25 C -0.13 -7.48 8.24 23.01 0.19 -7.29 16 26 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.06 0.86 6.68 -2.39 -0.02 0.85 16 29 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.07 0.15 6.68 -2.38 -0.02 0.13 16 33 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 34 H 0.10 -0.09 8.14 -2.38 -0.02 -0.11 16 35 H 0.09 1.57 7.00 -2.39 -0.02 1.55 16 36 H 0.17 1.08 7.00 -2.39 -0.02 1.07 16 37 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.42 9.87 6.49 -92.70 -0.60 9.27 16 40 H 0.14 3.89 6.38 -2.91 -0.02 3.87 16 41 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 42 H 0.11 4.66 8.06 -2.91 -0.02 4.63 16 43 H 0.29 15.11 8.30 -92.71 -0.77 14.34 16 44 H 0.10 6.16 5.74 -2.91 -0.02 6.15 16 Total: -1.00 -85.32 373.28 1.26 -84.06 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: 0.40 Total: 28.30 kcal Atomic # 6 Polarization: -44.33 SS G_CDS: 4.60 Total: -39.73 kcal Atomic # 7 Polarization: -69.14 SS G_CDS: -2.33 Total: -71.47 kcal Atomic # 8 Polarization: -59.85 SS G_CDS: -2.76 Total: -62.61 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 2.03 Total: 42.09 kcal Atomic # 16 Polarization: 20.04 SS G_CDS: -0.68 Total: 19.36 kcal Total: -85.32 1.26 -84.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171806216.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.503 kcal (2) G-P(sol) polarization free energy of solvation -85.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds