Wall clock time and date at job start Tue Mar 31 2020 13:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46833 * 2 1 4 4 H 1.08997 * 109.47266 * 304.99640 * 3 2 1 5 5 C 1.50706 * 109.46785 * 185.00307 * 3 2 1 6 6 C 1.38161 * 120.02995 * 343.70892 * 5 3 2 7 7 C 1.38247 * 120.05331 * 179.77284 * 6 5 3 8 8 C 1.38286 * 120.11428 * 0.50459 * 7 6 5 9 9 C 1.38125 * 120.05453 * 359.75403 * 8 7 6 10 10 C 1.38720 * 120.02443 * 163.98963 * 5 3 2 11 11 O 1.35898 * 120.05782 * 359.97438 * 10 5 3 12 12 C 1.42892 * 116.99909 * 179.97438 * 11 10 5 13 13 N 1.46499 * 109.47519 * 65.00310 * 3 2 1 14 14 C 1.46497 * 119.99691 * 65.15523 * 13 3 2 15 15 C 1.34770 * 120.00358 * 245.16276 * 13 3 2 16 16 O 1.21282 * 119.99509 * 359.97438 * 15 13 3 17 17 C 1.50697 * 120.00634 * 179.97438 * 15 13 3 18 18 S 1.80989 * 109.47468 * 179.97438 * 17 15 13 19 19 C 1.76200 * 100.00049 * 180.02562 * 18 17 15 20 20 H 1.08006 * 120.00141 * 359.97438 * 19 18 17 21 21 C 1.38802 * 120.00202 * 180.02562 * 19 18 17 22 22 N 1.31627 * 119.99775 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00001 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47451 * 59.99500 * 23 21 19 25 25 H 1.48499 * 109.47107 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47042 * 299.99240 * 23 21 19 27 27 H 1.09005 * 109.46463 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46863 * 299.99689 * 1 2 3 29 29 H 1.08999 * 109.47151 * 60.00118 * 1 2 3 30 30 H 1.08998 * 109.47425 * 120.00357 * 2 1 3 31 31 H 1.09003 * 109.46951 * 240.00176 * 2 1 3 32 32 H 1.08003 * 119.97198 * 0.02917 * 6 5 3 33 33 H 1.08002 * 119.94069 * 180.25521 * 7 6 5 34 34 H 1.07998 * 119.97127 * 179.77042 * 8 7 6 35 35 H 1.07997 * 120.02697 * 180.02562 * 9 8 7 36 36 H 1.09008 * 109.47244 * 180.02562 * 12 11 10 37 37 H 1.09003 * 109.47519 * 300.00446 * 12 11 10 38 38 H 1.09003 * 109.47114 * 60.00583 * 12 11 10 39 39 H 1.09000 * 109.47069 * 95.16062 * 14 13 3 40 40 H 1.09005 * 109.47463 * 215.16195 * 14 13 3 41 41 H 1.09001 * 109.47510 * 335.16562 * 14 13 3 42 42 H 1.08997 * 109.47026 * 300.00445 * 17 15 13 43 43 H 1.09007 * 109.46702 * 59.99620 * 17 15 13 44 44 H 0.97001 * 120.00385 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 6 4.2572 0.2877 0.1201 7 6 5.6346 0.2876 0.0020 8 6 6.3008 1.4470 -0.3503 9 6 5.5908 2.6073 -0.5902 10 6 4.2078 2.6087 -0.4774 11 8 3.5069 3.7489 -0.7129 12 6 4.2585 4.9099 -1.0720 13 7 1.6524 2.0975 1.2518 14 6 2.2042 1.6284 2.5252 15 6 0.7883 3.1315 1.2320 16 8 0.3318 3.5200 0.1776 17 6 0.3892 3.8050 2.5196 18 16 -0.7725 5.1465 2.1641 19 6 -1.0619 5.7415 3.7972 20 1 -0.5683 5.2753 4.6372 21 6 -1.9249 6.8087 4.0043 22 7 -2.5268 7.3766 2.9807 23 14 -2.2322 7.4390 5.7357 24 1 -0.9503 7.8933 6.3320 25 1 -3.1853 8.5766 5.6864 26 1 -2.8049 6.3484 6.5651 27 1 -0.3632 -1.0278 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.7395 -0.6181 0.3994 33 1 6.1916 -0.6186 0.1892 34 1 7.3772 1.4453 -0.4383 35 1 6.1115 3.5124 -0.8657 36 1 3.5794 5.7476 -1.2312 37 1 4.9548 5.1545 -0.2698 38 1 4.8148 4.7136 -1.9886 39 1 3.0754 2.2289 2.7869 40 1 1.4493 1.7240 3.3057 41 1 2.4987 0.5832 2.4307 42 1 -0.0856 3.0776 3.1781 43 1 1.2755 4.2118 3.0067 44 1 -3.1296 8.1226 3.1253 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359891400.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:48 Heat of formation + Delta-G solvation = -45.796495 kcal Electronic energy + Delta-G solvation = -25659.975266 eV Core-core repulsion = 22090.221907 eV Total energy + Delta-G solvation = -3569.753359 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.64946 -39.18457 -37.56274 -35.95876 -33.20692 -32.38919 -31.17324 -30.27151 -29.02028 -27.38164 -26.98027 -25.60079 -25.25014 -22.98017 -21.82126 -20.74798 -18.93003 -18.11394 -17.62343 -16.70946 -16.33124 -16.06671 -15.72335 -15.36235 -15.20715 -14.77168 -14.48307 -14.24134 -13.93185 -13.77589 -13.55253 -13.02104 -12.88543 -12.77130 -12.53613 -12.40943 -12.11731 -11.98601 -11.83775 -11.78270 -11.58804 -11.18288 -11.09818 -11.01550 -10.99188 -10.79712 -10.73003 -10.69579 -9.76472 -9.32080 -9.02096 -8.96615 -8.37756 -8.19548 -8.16131 -6.44019 -6.17560 -3.87106 1.11250 1.31667 3.06102 3.23396 3.25667 3.28506 3.30816 3.32565 3.59411 3.84718 4.24799 4.43556 4.64642 4.82266 4.93887 5.00781 5.08043 5.13977 5.15716 5.17176 5.18028 5.23164 5.27702 5.44316 5.48448 5.54906 5.56115 5.63287 5.76059 5.81638 5.82609 5.89717 5.99818 6.01537 6.12798 6.21165 6.22786 6.32424 6.36399 6.41064 6.64565 6.84913 7.37179 7.62915 7.74080 8.38969 8.75880 9.27528 10.89765 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017096 B = 0.003395 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.462801 B = 8244.937041 C = 8836.809628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.131 4.131 3 C 0.191 3.809 4 H 0.111 0.889 5 C -0.129 4.129 6 C -0.074 4.074 7 C -0.164 4.164 8 C -0.080 4.080 9 C -0.214 4.214 10 C 0.148 3.852 11 O -0.297 6.297 12 C 0.028 3.972 13 N -0.609 5.609 14 C 0.084 3.916 15 C 0.538 3.462 16 O -0.511 6.511 17 C -0.148 4.148 18 S -0.060 6.060 19 C -0.535 4.535 20 H 0.071 0.929 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.917 3.083 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.131 0.869 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.127 0.873 36 H 0.104 0.896 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.049 0.951 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.472 -15.326 -5.819 23.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.170 4.170 3 C 0.087 3.913 4 H 0.129 0.871 5 C -0.130 4.130 6 C -0.092 4.092 7 C -0.183 4.183 8 C -0.098 4.098 9 C -0.233 4.233 10 C 0.101 3.899 11 O -0.208 6.208 12 C -0.067 4.067 13 N -0.344 5.344 14 C -0.060 4.060 15 C 0.325 3.675 16 O -0.384 6.384 17 C -0.299 4.299 18 S 0.167 5.833 19 C -0.683 4.683 20 H 0.089 0.911 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.743 3.257 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.200 1.200 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.149 0.851 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.144 0.856 36 H 0.122 0.878 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 16.427 -14.539 -7.435 23.162 hybrid contribution 0.855 0.124 2.436 2.585 sum 17.282 -14.414 -4.999 23.053 Atomic orbital electron populations 1.21700 0.94858 1.01100 1.02923 1.21956 0.97075 0.95932 1.01993 1.19671 0.88924 0.93589 0.89080 0.87090 1.19532 0.96151 0.91704 1.05652 1.20994 0.93808 0.97113 0.97321 1.20998 0.94382 0.98380 1.04500 1.20918 0.99537 0.92266 0.97070 1.21252 0.92969 1.00095 1.08980 1.18991 0.90093 0.86790 0.94006 1.86292 1.35089 1.16767 1.82698 1.23086 0.97668 0.86695 0.99239 1.47805 1.46269 1.34017 1.06355 1.21645 0.99019 0.99597 0.85726 1.20196 0.77638 0.78663 0.90957 1.90672 1.53011 1.62430 1.32328 1.23544 1.04966 1.03699 0.97653 1.85354 1.52669 1.33319 1.12006 1.22837 1.32206 1.20337 0.92923 0.91111 1.24973 0.94923 0.95577 0.98050 1.70010 1.27701 1.22504 1.30130 0.86252 0.78217 0.78357 0.82841 1.19988 1.20840 1.19952 0.92965 0.92380 0.92345 0.91630 0.90967 0.85105 0.86075 0.86090 0.85557 0.87774 0.92849 0.92974 0.93227 0.91089 0.91422 0.89536 0.89620 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.80 37.16 0.36 -1.45 16 2 C -0.13 -1.41 4.15 -26.73 -0.11 -1.52 16 3 C 0.19 2.62 1.86 -69.08 -0.13 2.49 16 4 H 0.11 1.87 6.75 -51.93 -0.35 1.52 16 5 C -0.13 -1.59 4.70 -104.47 -0.49 -2.09 16 6 C -0.07 -0.72 9.03 -39.61 -0.36 -1.08 16 7 C -0.16 -1.46 10.04 -39.56 -0.40 -1.86 16 8 C -0.08 -0.73 10.04 -39.61 -0.40 -1.13 16 9 C -0.21 -2.32 9.04 -39.43 -0.36 -2.68 16 10 C 0.15 1.96 6.66 -39.21 -0.26 1.70 16 11 O -0.30 -4.50 9.81 -19.42 -0.19 -4.69 16 12 C 0.03 0.32 9.81 101.05 0.99 1.31 16 13 N -0.61 -9.24 2.21 -175.26 -0.39 -9.63 16 14 C 0.08 1.00 9.34 59.85 0.56 1.56 16 15 C 0.54 10.65 7.61 -10.99 -0.08 10.56 16 16 O -0.51 -11.92 15.20 5.56 0.08 -11.84 16 17 C -0.15 -3.14 4.77 36.00 0.17 -2.97 16 18 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 19 C -0.53 -15.45 9.50 30.94 0.29 -15.15 16 20 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 21 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 22 N -0.87 -26.41 13.22 55.49 0.73 -25.67 16 23 Si 0.92 21.61 29.55 -169.99 -5.02 16.58 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.82 7.67 -51.93 -0.40 0.42 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.60 5.76 -51.93 -0.30 0.30 16 31 H 0.07 0.68 7.97 -51.93 -0.41 0.26 16 32 H 0.13 1.02 6.07 -52.48 -0.32 0.70 16 33 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 35 H 0.13 1.15 6.30 -52.49 -0.33 0.82 16 36 H 0.10 1.17 8.14 -51.92 -0.42 0.75 16 37 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 38 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.83 6.66 -51.93 -0.35 0.49 16 41 H 0.07 0.64 6.66 -51.93 -0.35 0.30 16 42 H 0.09 1.70 7.41 -51.92 -0.38 1.32 16 43 H 0.09 1.73 8.11 -51.91 -0.42 1.31 16 44 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 373.24 15.07 5.62 5.62 Total: -1.00 -34.95 373.24 -8.16 -43.11 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -6.49 Total: 0.65 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -0.30 Total: -10.26 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: 0.35 Total: -35.30 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.11 Total: -16.53 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.95 -8.16 -43.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359891400.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.687 kcal (2) G-P(sol) polarization free energy of solvation -34.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds