Wall clock time and date at job start Tue Mar 31 2020 13:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46833 * 2 1 4 4 H 1.08997 * 109.47266 * 304.99640 * 3 2 1 5 5 C 1.50706 * 109.46785 * 185.00307 * 3 2 1 6 6 C 1.38161 * 120.02995 * 343.70892 * 5 3 2 7 7 C 1.38247 * 120.05331 * 179.77284 * 6 5 3 8 8 C 1.38286 * 120.11428 * 0.50459 * 7 6 5 9 9 C 1.38125 * 120.05453 * 359.75403 * 8 7 6 10 10 C 1.38720 * 120.02443 * 163.98963 * 5 3 2 11 11 O 1.35898 * 120.05782 * 359.97438 * 10 5 3 12 12 C 1.42892 * 116.99909 * 179.97438 * 11 10 5 13 13 N 1.46499 * 109.47519 * 65.00310 * 3 2 1 14 14 C 1.46497 * 119.99691 * 65.15523 * 13 3 2 15 15 C 1.34770 * 120.00358 * 245.16276 * 13 3 2 16 16 O 1.21282 * 119.99509 * 359.97438 * 15 13 3 17 17 C 1.50697 * 120.00634 * 179.97438 * 15 13 3 18 18 S 1.80989 * 109.47468 * 179.97438 * 17 15 13 19 19 C 1.76200 * 100.00049 * 180.02562 * 18 17 15 20 20 H 1.08006 * 120.00141 * 359.97438 * 19 18 17 21 21 C 1.38802 * 120.00202 * 180.02562 * 19 18 17 22 22 N 1.31627 * 119.99775 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00001 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47451 * 59.99500 * 23 21 19 25 25 H 1.48499 * 109.47107 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47042 * 299.99240 * 23 21 19 27 27 H 1.09005 * 109.46463 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.46863 * 299.99689 * 1 2 3 29 29 H 1.08999 * 109.47151 * 60.00118 * 1 2 3 30 30 H 1.08998 * 109.47425 * 120.00357 * 2 1 3 31 31 H 1.09003 * 109.46951 * 240.00176 * 2 1 3 32 32 H 1.08003 * 119.97198 * 0.02917 * 6 5 3 33 33 H 1.08002 * 119.94069 * 180.25521 * 7 6 5 34 34 H 1.07998 * 119.97127 * 179.77042 * 8 7 6 35 35 H 1.07997 * 120.02697 * 180.02562 * 9 8 7 36 36 H 1.09008 * 109.47244 * 180.02562 * 12 11 10 37 37 H 1.09003 * 109.47519 * 300.00446 * 12 11 10 38 38 H 1.09003 * 109.47114 * 60.00583 * 12 11 10 39 39 H 1.09000 * 109.47069 * 95.16062 * 14 13 3 40 40 H 1.09005 * 109.47463 * 215.16195 * 14 13 3 41 41 H 1.09001 * 109.47510 * 335.16562 * 14 13 3 42 42 H 1.08997 * 109.47026 * 300.00445 * 17 15 13 43 43 H 1.09007 * 109.46702 * 59.99620 * 17 15 13 44 44 H 0.97001 * 120.00385 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1239 6 6 4.2572 0.2877 0.1201 7 6 5.6346 0.2876 0.0020 8 6 6.3008 1.4470 -0.3503 9 6 5.5908 2.6073 -0.5902 10 6 4.2078 2.6087 -0.4774 11 8 3.5069 3.7489 -0.7129 12 6 4.2585 4.9099 -1.0720 13 7 1.6524 2.0975 1.2518 14 6 2.2042 1.6284 2.5252 15 6 0.7883 3.1315 1.2320 16 8 0.3318 3.5200 0.1776 17 6 0.3892 3.8050 2.5196 18 16 -0.7725 5.1465 2.1641 19 6 -1.0619 5.7415 3.7972 20 1 -0.5683 5.2753 4.6372 21 6 -1.9249 6.8087 4.0043 22 7 -2.5268 7.3766 2.9807 23 14 -2.2322 7.4390 5.7357 24 1 -0.9503 7.8933 6.3320 25 1 -3.1853 8.5766 5.6864 26 1 -2.8049 6.3484 6.5651 27 1 -0.3632 -1.0278 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.7395 -0.6181 0.3994 33 1 6.1916 -0.6186 0.1892 34 1 7.3772 1.4453 -0.4383 35 1 6.1115 3.5124 -0.8657 36 1 3.5794 5.7476 -1.2312 37 1 4.9548 5.1545 -0.2698 38 1 4.8148 4.7136 -1.9886 39 1 3.0754 2.2289 2.7869 40 1 1.4493 1.7240 3.3057 41 1 2.4987 0.5832 2.4307 42 1 -0.0856 3.0776 3.1781 43 1 1.2755 4.2118 3.0067 44 1 -3.1296 8.1226 3.1253 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359891400.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:48 Heat of formation + Delta-G solvation = -67.145431 kcal Electronic energy + Delta-G solvation = -25660.901025 eV Core-core repulsion = 22090.221907 eV Total energy + Delta-G solvation = -3570.679118 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.63926 -40.46015 -38.54030 -37.13854 -34.59028 -34.38086 -32.03725 -31.09823 -30.55810 -28.30851 -28.02999 -27.68360 -26.45625 -23.83287 -22.65713 -21.89530 -20.27086 -19.54328 -18.98651 -18.17191 -17.34912 -17.08335 -16.88831 -16.80562 -16.55922 -16.22755 -15.97317 -15.28056 -15.04247 -14.87716 -14.65795 -14.50335 -14.26690 -13.99119 -13.66723 -13.48535 -13.32540 -13.18119 -13.07221 -12.88241 -12.87153 -12.64101 -12.63101 -12.48773 -12.09005 -11.98880 -11.74819 -11.64666 -11.62503 -11.13182 -10.81563 -10.26866 -9.84481 -9.58297 -9.08429 -8.66824 -8.34407 -6.12734 0.31874 0.52652 1.27086 1.43156 1.46308 1.56513 1.70156 2.20464 2.28364 2.44005 2.91105 2.99148 3.28347 3.52519 3.82782 3.86865 4.05326 4.16546 4.17123 4.19876 4.25783 4.29556 4.29999 4.41630 4.45358 4.47352 4.60058 4.65409 4.65776 4.68040 4.79065 4.87940 4.95239 5.04777 5.08237 5.17826 5.38199 5.40433 5.45772 5.50600 5.60801 5.70529 5.92658 6.19123 6.39065 6.50708 7.06118 7.27148 8.74652 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017096 B = 0.003395 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.462801 B = 8244.937041 C = 8836.809628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C 0.192 3.808 4 H 0.067 0.933 5 C -0.147 4.147 6 C -0.068 4.068 7 C -0.158 4.158 8 C -0.078 4.078 9 C -0.221 4.221 10 C 0.116 3.884 11 O -0.337 6.337 12 C 0.025 3.975 13 N -0.594 5.594 14 C 0.076 3.924 15 C 0.535 3.465 16 O -0.559 6.559 17 C -0.121 4.121 18 S -0.148 6.148 19 C -0.548 4.548 20 H 0.080 0.920 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.998 3.002 24 H -0.262 1.262 25 H -0.278 1.278 26 H -0.261 1.261 27 H 0.077 0.923 28 H 0.033 0.967 29 H 0.033 0.967 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.157 0.843 33 H 0.154 0.846 34 H 0.149 0.851 35 H 0.136 0.864 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.052 0.948 40 H 0.074 0.926 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.163 -18.192 -3.779 27.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C 0.089 3.911 4 H 0.085 0.915 5 C -0.148 4.148 6 C -0.086 4.086 7 C -0.176 4.176 8 C -0.096 4.096 9 C -0.240 4.240 10 C 0.070 3.930 11 O -0.250 6.250 12 C -0.069 4.069 13 N -0.328 5.328 14 C -0.066 4.066 15 C 0.323 3.677 16 O -0.437 6.437 17 C -0.272 4.272 18 S 0.080 5.920 19 C -0.696 4.696 20 H 0.098 0.902 21 C -0.190 4.190 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.187 1.187 25 H -0.203 1.203 26 H -0.186 1.186 27 H 0.096 0.904 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.175 0.825 33 H 0.172 0.828 34 H 0.167 0.833 35 H 0.154 0.846 36 H 0.110 0.890 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.071 0.929 40 H 0.093 0.907 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.115 0.885 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 19.166 -17.455 -5.386 26.477 hybrid contribution 0.163 0.897 1.727 1.953 sum 19.330 -16.559 -3.659 25.714 Atomic orbital electron populations 1.21688 0.96281 1.01948 1.00559 1.21944 0.95648 0.94009 1.04339 1.19694 0.90287 0.94490 0.86659 0.91469 1.19534 0.95016 0.92761 1.07526 1.21268 0.94387 0.96703 0.96251 1.21415 0.94117 0.99349 1.02688 1.21326 1.00994 0.91659 0.95627 1.21460 0.92074 1.01483 1.08976 1.19374 0.91295 0.86552 0.95768 1.86233 1.37091 1.18185 1.83516 1.23173 0.97488 0.85702 1.00586 1.47775 1.44318 1.32184 1.08475 1.21923 0.99048 1.01651 0.84009 1.19978 0.78500 0.79680 0.89572 1.90654 1.55268 1.64268 1.33494 1.23351 1.03371 1.01529 0.98966 1.85546 1.55606 1.37100 1.13779 1.23164 1.32669 1.20890 0.92842 0.90163 1.26129 0.94266 0.95545 1.03096 1.70181 1.28464 1.23131 1.32976 0.85010 0.78555 0.77922 0.76544 1.18679 1.20261 1.18567 0.90378 0.94775 0.94777 0.88739 0.88837 0.82524 0.82840 0.83319 0.84582 0.88970 0.91795 0.90942 0.92907 0.90730 0.87902 0.87760 0.88548 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 9.80 71.98 0.71 -2.83 16 2 C -0.12 -2.36 4.15 30.59 0.13 -2.23 16 3 C 0.19 5.24 1.86 44.25 0.08 5.32 16 4 H 0.07 2.45 6.75 -2.39 -0.02 2.43 16 5 C -0.15 -3.44 4.70 -19.77 -0.09 -3.53 16 6 C -0.07 -1.06 9.03 22.25 0.20 -0.86 16 7 C -0.16 -2.07 10.04 22.28 0.22 -1.85 16 8 C -0.08 -1.16 10.04 22.25 0.22 -0.93 16 9 C -0.22 -4.44 9.04 22.37 0.20 -4.24 16 10 C 0.12 3.06 6.66 22.51 0.15 3.21 16 11 O -0.34 -10.86 9.81 -92.40 -0.91 -11.77 16 12 C 0.03 0.60 9.81 113.37 1.11 1.71 16 13 N -0.59 -17.99 2.21 -826.81 -1.83 -19.82 16 14 C 0.08 1.65 9.34 127.77 1.19 2.84 16 15 C 0.54 22.12 7.61 87.66 0.67 22.78 16 16 O -0.56 -28.11 15.20 -3.04 -0.05 -28.16 16 17 C -0.12 -5.26 4.77 71.24 0.34 -4.92 16 18 S -0.15 -8.56 20.57 -56.49 -1.16 -9.72 16 19 C -0.55 -32.24 9.50 67.95 0.65 -31.59 16 20 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 21 C 0.01 0.84 5.49 84.86 0.47 1.30 16 22 N -0.91 -57.06 13.22 21.65 0.29 -56.77 16 23 Si 1.00 44.34 29.55 68.60 2.03 46.37 16 24 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 25 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 26 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 27 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.03 0.96 7.67 -2.39 -0.02 0.95 16 29 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.09 1.31 5.76 -2.39 -0.01 1.29 16 31 H 0.09 1.47 7.97 -2.39 -0.02 1.45 16 32 H 0.16 1.57 6.07 -2.91 -0.02 1.56 16 33 H 0.15 1.07 8.06 -2.91 -0.02 1.05 16 34 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 35 H 0.14 2.31 6.30 -2.91 -0.02 2.29 16 36 H 0.09 2.32 8.14 -2.38 -0.02 2.31 16 37 H 0.06 1.33 7.66 -2.39 -0.02 1.31 16 38 H 0.07 1.36 7.66 -2.39 -0.02 1.34 16 39 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.07 1.59 6.66 -2.38 -0.02 1.57 16 41 H 0.10 1.52 6.66 -2.39 -0.02 1.51 16 42 H 0.10 4.11 7.41 -2.40 -0.02 4.09 16 43 H 0.10 3.94 8.11 -2.39 -0.02 3.92 16 44 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -81.92 373.24 5.61 -76.31 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.99 Total: 19.38 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: 6.25 Total: -15.81 kcal Atomic # 7 Polarization: -75.05 SS G_CDS: -1.54 Total: -76.59 kcal Atomic # 8 Polarization: -38.97 SS G_CDS: -0.95 Total: -39.93 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.72 kcal Total: -81.92 5.61 -76.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359891400.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.164 kcal (2) G-P(sol) polarization free energy of solvation -81.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds