Wall clock time and date at job start Tue Mar 31 2020 14:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47035 * 2 1 4 4 C 1.52999 * 109.47073 * 119.99582 * 2 1 3 5 5 C 1.53005 * 109.47073 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47115 * 300.00109 * 5 4 2 7 7 H 1.09008 * 109.46933 * 299.99913 * 6 5 4 8 8 N 1.46498 * 109.46856 * 180.02562 * 6 5 4 9 9 S 1.65606 * 119.99818 * 142.61202 * 8 6 5 10 10 O 1.42100 * 106.40015 * 180.53683 * 9 8 6 11 11 O 1.42094 * 106.39935 * 313.45854 * 9 8 6 12 12 C 1.76200 * 107.21780 * 66.99892 * 9 8 6 13 13 C 1.37642 * 120.12602 * 246.76102 * 12 9 8 14 14 C 1.38615 * 120.24445 * 179.69984 * 13 12 9 15 15 C 1.38650 * 120.50105 * 0.59963 * 14 13 12 16 16 C 1.37594 * 120.24989 * 359.67706 * 15 14 13 17 17 C 1.40698 * 120.12670 * 67.03059 * 12 9 8 18 18 C 1.41392 * 120.24605 * 0.02788 * 17 12 9 19 19 H 1.08001 * 120.00050 * 333.47803 * 18 17 12 20 20 C 1.39944 * 120.00174 * 153.48176 * 18 17 12 21 21 N 1.30827 * 119.99682 * 344.77189 * 20 18 17 22 22 Si 1.86800 * 120.00240 * 164.77059 * 20 18 17 23 23 H 1.48502 * 109.46678 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47236 * 119.99638 * 22 20 18 25 25 H 1.48493 * 109.47379 * 240.00138 * 22 20 18 26 26 C 1.53002 * 109.46903 * 59.99908 * 6 5 4 27 27 C 1.52998 * 109.47254 * 299.99706 * 26 6 5 28 28 H 1.08998 * 109.47288 * 300.00220 * 1 2 3 29 29 H 1.09001 * 109.47091 * 60.00268 * 1 2 3 30 30 H 1.08999 * 109.46942 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47340 * 60.00116 * 4 2 1 32 32 H 1.08998 * 109.47225 * 300.00237 * 4 2 1 33 33 H 1.09001 * 109.47091 * 180.02562 * 5 4 2 34 34 H 1.08998 * 109.47035 * 60.00418 * 5 4 2 35 35 H 0.96997 * 120.00153 * 322.60998 * 8 6 5 36 36 H 1.08004 * 119.87545 * 359.97438 * 13 12 9 37 37 H 1.08003 * 119.74507 * 180.29726 * 14 13 12 38 38 H 1.08005 * 119.87713 * 179.70275 * 15 14 13 39 39 H 1.08007 * 120.12810 * 180.02562 * 16 15 14 40 40 H 0.96999 * 119.99666 * 180.02562 * 21 20 18 41 41 H 1.08994 * 109.46803 * 60.00368 * 26 6 5 42 42 H 1.09005 * 109.46541 * 179.97438 * 26 6 5 43 43 H 1.08999 * 109.47189 * 300.00510 * 27 26 6 44 44 H 1.09001 * 109.47035 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5701 -0.7217 1.2490 6 6 4.0796 -1.4434 -0.0002 7 1 3.7158 -2.4710 0.0001 8 7 5.5445 -1.4444 -0.0002 9 16 6.3716 -2.7690 -0.5515 10 8 7.7529 -2.4665 -0.4112 11 8 5.7594 -3.9025 0.0481 12 6 6.0628 -2.8937 -2.2818 13 6 5.3403 -3.9541 -2.7799 14 6 5.0907 -4.0514 -4.1399 15 6 5.5748 -3.0909 -5.0147 16 6 6.3042 -2.0253 -4.5397 17 6 6.5586 -1.9128 -3.1601 18 6 7.3074 -0.8224 -2.6605 19 1 7.1585 -0.4850 -1.6454 20 6 8.2413 -0.1802 -3.4814 21 7 8.6417 -0.7518 -4.5880 22 14 8.9162 1.4929 -2.9971 23 1 8.3085 1.9182 -1.7106 24 1 10.3906 1.4063 -2.8428 25 1 8.5863 2.4841 -4.0524 26 6 3.5695 -0.7222 -1.2495 27 6 2.0395 -0.7217 -1.2492 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6767 -1.7488 1.2494 32 1 1.6767 -0.2073 2.1392 33 1 3.9334 -1.2359 2.1388 34 1 3.9338 0.3058 1.2487 35 1 6.0301 -0.6693 0.3227 36 1 4.9628 -4.7108 -2.1081 37 1 4.5188 -4.8843 -4.5215 38 1 5.3784 -3.1792 -6.0731 39 1 6.6801 -1.2779 -5.2229 40 1 9.2893 -0.3068 -5.1568 41 1 3.9333 0.3053 -1.2498 42 1 3.9329 -1.2361 -2.1395 43 1 1.6759 -1.7492 -1.2489 44 1 1.6762 -0.2083 -2.1394 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601340477.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:18 Heat of formation + Delta-G solvation = -91.099126 kcal Electronic energy + Delta-G solvation = -26700.117172 eV Core-core repulsion = 23128.399344 eV Total energy + Delta-G solvation = -3571.717828 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -38.85248 -37.57630 -36.18993 -34.80357 -34.54986 -33.88520 -30.66886 -30.29637 -30.15993 -29.52356 -25.59264 -25.37031 -22.54807 -21.60480 -21.21436 -20.98979 -19.82822 -18.49497 -17.69606 -16.78217 -16.37504 -15.73225 -15.36661 -14.58280 -14.38926 -14.24038 -14.16808 -14.00917 -13.43068 -13.26134 -13.14472 -12.80758 -12.73654 -12.23647 -12.08016 -11.87471 -11.70868 -11.56169 -11.27909 -11.21860 -11.15887 -11.08015 -11.00694 -10.96827 -10.82942 -10.64557 -10.49650 -10.44914 -10.24578 -9.91103 -9.88369 -9.43298 -9.36645 -8.70011 -8.00338 -7.61405 -7.06006 -4.74371 1.57600 2.35573 2.72282 2.96104 3.01619 3.10636 3.76089 3.95879 4.39684 4.73931 4.78689 4.80883 4.93878 5.15450 5.27853 5.34055 5.51830 5.58181 5.60271 5.63867 5.67467 5.68107 5.79569 5.87462 5.96841 6.05982 6.10802 6.13203 6.23746 6.24824 6.31902 6.40282 6.42092 6.48834 6.68064 6.75693 6.80750 6.96247 7.09798 7.31569 7.50754 7.58641 7.70534 7.82580 7.90516 8.29948 8.49925 8.66092 9.87441 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011549 B = 0.005475 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.916146 B = 5113.209203 C = 5474.304372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 H 0.069 0.931 4 C -0.111 4.111 5 C -0.123 4.123 6 C 0.159 3.841 7 H 0.087 0.913 8 N -1.118 6.118 9 S 2.698 3.302 10 O -0.966 6.966 11 O -0.999 6.999 12 C -0.775 4.775 13 C -0.001 4.001 14 C -0.252 4.252 15 C -0.076 4.076 16 C -0.161 4.161 17 C 0.188 3.812 18 C -0.441 4.441 19 H 0.088 0.912 20 C 0.081 3.919 21 N -0.772 5.772 22 Si 0.914 3.086 23 H -0.255 1.255 24 H -0.269 1.269 25 H -0.270 1.270 26 C -0.140 4.140 27 C -0.111 4.111 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.410 0.590 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.123 0.877 40 H 0.287 0.713 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.555 4.600 5.536 12.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 H 0.087 0.913 4 C -0.149 4.149 5 C -0.162 4.162 6 C 0.051 3.949 7 H 0.105 0.895 8 N -0.873 5.873 9 S 2.795 3.205 10 O -0.957 6.957 11 O -0.990 6.990 12 C -0.870 4.870 13 C -0.021 4.021 14 C -0.273 4.273 15 C -0.094 4.094 16 C -0.181 4.181 17 C 0.183 3.817 18 C -0.469 4.469 19 H 0.105 0.895 20 C -0.141 4.141 21 N -0.395 5.395 22 Si 0.737 3.263 23 H -0.178 1.178 24 H -0.194 1.194 25 H -0.195 1.195 26 C -0.179 4.179 27 C -0.149 4.149 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.243 0.757 36 H 0.124 0.876 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.140 0.860 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.081 0.919 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.940 3.901 5.847 12.174 hybrid contribution 0.348 1.189 -0.654 1.401 sum -9.592 5.090 5.192 12.037 Atomic orbital electron populations 1.21830 0.95629 1.01677 1.01259 1.21189 0.95037 0.99788 0.95303 0.91254 1.21563 0.95002 1.00913 0.97452 1.21819 0.95555 1.01038 0.97785 1.20652 0.79130 1.00330 0.94789 0.89503 1.55767 1.14621 1.35770 1.81162 1.01129 0.72731 0.71910 0.74688 1.93544 1.30965 1.83933 1.87229 1.93440 1.78539 1.49797 1.77217 1.29815 1.27363 1.07958 1.21884 1.20234 0.92540 0.94039 0.95269 1.20456 1.10818 1.02405 0.93572 1.20873 0.96472 0.94787 0.97317 1.21468 1.01100 0.99286 0.96204 1.16954 0.85373 0.87998 0.91347 1.19877 1.16082 1.11406 0.99544 0.89455 1.25963 0.95102 0.99301 0.93729 1.69809 1.22633 1.36419 1.10635 0.86146 0.79516 0.80450 0.80181 1.17787 1.19359 1.19458 1.22094 0.94807 1.01907 0.99067 1.21560 0.95657 1.00623 0.97099 0.93063 0.92861 0.92742 0.91721 0.92011 0.91451 0.91497 0.75712 0.87581 0.88879 0.88964 0.85961 0.90179 0.91406 0.90005 0.91905 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.19 37.16 0.34 -0.98 16 2 C -0.09 -0.99 2.72 -90.62 -0.25 -1.24 16 3 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.11 -1.16 5.20 -26.73 -0.14 -1.30 16 5 C -0.12 -1.48 5.47 -26.73 -0.15 -1.63 16 6 C 0.16 2.39 2.82 -67.93 -0.19 2.20 16 7 H 0.09 1.39 7.43 -51.92 -0.39 1.00 16 8 N -1.12 -19.39 4.76 -4.89 -0.02 -19.41 16 9 S 2.70 59.07 4.96 -107.50 -0.53 58.54 16 10 O -0.97 -24.17 16.35 -57.17 -0.93 -25.11 16 11 O -1.00 -22.88 16.23 -57.17 -0.93 -23.81 16 12 C -0.77 -18.22 5.11 -38.87 -0.20 -18.42 16 13 C 0.00 -0.02 9.54 -39.66 -0.38 -0.40 16 14 C -0.25 -5.45 10.05 -39.29 -0.39 -5.85 16 15 C -0.08 -1.67 10.02 -39.66 -0.40 -2.07 16 16 C -0.16 -3.91 8.68 -38.87 -0.34 -4.25 16 17 C 0.19 4.68 5.55 -106.83 -0.59 4.09 16 18 C -0.44 -10.88 7.66 -37.74 -0.29 -11.17 16 19 H 0.09 2.03 5.74 -52.49 -0.30 1.73 16 20 C 0.08 1.92 5.18 -17.34 -0.09 1.83 16 21 N -0.77 -18.82 10.94 55.55 0.61 -18.21 16 22 Si 0.91 17.80 29.59 -169.99 -5.03 12.77 16 23 H -0.25 -4.83 7.11 56.52 0.40 -4.42 16 24 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 25 H -0.27 -5.04 7.11 56.52 0.40 -4.63 16 26 C -0.14 -2.08 5.53 -26.73 -0.15 -2.23 16 27 C -0.11 -1.37 5.20 -26.73 -0.14 -1.51 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.41 6.37 8.61 -34.48 -0.30 6.07 16 36 H 0.11 2.22 7.32 -52.48 -0.38 1.84 16 37 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 38 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 39 H 0.12 3.01 6.22 -52.48 -0.33 2.68 16 40 H 0.29 6.27 8.30 -40.82 -0.34 5.93 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.08 1.45 7.25 -51.93 -0.38 1.07 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 358.60 15.07 5.40 5.40 Total: -1.00 -29.40 358.60 -11.48 -40.88 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -6.70 Total: 11.85 kcal Atomic # 6 Polarization: -39.55 SS G_CDS: -3.35 Total: -42.90 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.58 Total: -37.62 kcal Atomic # 8 Polarization: -47.05 SS G_CDS: -1.86 Total: -48.92 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.77 kcal Atomic # 16 Polarization: 59.07 SS G_CDS: -0.53 Total: 58.54 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.40 -11.48 -40.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601340477.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.218 kcal (2) G-P(sol) polarization free energy of solvation -29.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds