Wall clock time and date at job start Tue Mar 31 2020 14:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47035 * 2 1 4 4 C 1.52999 * 109.47073 * 119.99582 * 2 1 3 5 5 C 1.53005 * 109.47073 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47115 * 300.00109 * 5 4 2 7 7 H 1.09008 * 109.46933 * 299.99913 * 6 5 4 8 8 N 1.46498 * 109.46856 * 180.02562 * 6 5 4 9 9 S 1.65606 * 119.99818 * 142.61202 * 8 6 5 10 10 O 1.42100 * 106.40015 * 180.53683 * 9 8 6 11 11 O 1.42094 * 106.39935 * 313.45854 * 9 8 6 12 12 C 1.76200 * 107.21780 * 66.99892 * 9 8 6 13 13 C 1.37642 * 120.12602 * 246.76102 * 12 9 8 14 14 C 1.38615 * 120.24445 * 179.69984 * 13 12 9 15 15 C 1.38650 * 120.50105 * 0.59963 * 14 13 12 16 16 C 1.37594 * 120.24989 * 359.67706 * 15 14 13 17 17 C 1.40698 * 120.12670 * 67.03059 * 12 9 8 18 18 C 1.41392 * 120.24605 * 0.02788 * 17 12 9 19 19 H 1.08001 * 120.00050 * 333.47803 * 18 17 12 20 20 C 1.39944 * 120.00174 * 153.48176 * 18 17 12 21 21 N 1.30827 * 119.99682 * 344.77189 * 20 18 17 22 22 Si 1.86800 * 120.00240 * 164.77059 * 20 18 17 23 23 H 1.48502 * 109.46678 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47236 * 119.99638 * 22 20 18 25 25 H 1.48493 * 109.47379 * 240.00138 * 22 20 18 26 26 C 1.53002 * 109.46903 * 59.99908 * 6 5 4 27 27 C 1.52998 * 109.47254 * 299.99706 * 26 6 5 28 28 H 1.08998 * 109.47288 * 300.00220 * 1 2 3 29 29 H 1.09001 * 109.47091 * 60.00268 * 1 2 3 30 30 H 1.08999 * 109.46942 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47340 * 60.00116 * 4 2 1 32 32 H 1.08998 * 109.47225 * 300.00237 * 4 2 1 33 33 H 1.09001 * 109.47091 * 180.02562 * 5 4 2 34 34 H 1.08998 * 109.47035 * 60.00418 * 5 4 2 35 35 H 0.96997 * 120.00153 * 322.60998 * 8 6 5 36 36 H 1.08004 * 119.87545 * 359.97438 * 13 12 9 37 37 H 1.08003 * 119.74507 * 180.29726 * 14 13 12 38 38 H 1.08005 * 119.87713 * 179.70275 * 15 14 13 39 39 H 1.08007 * 120.12810 * 180.02562 * 16 15 14 40 40 H 0.96999 * 119.99666 * 180.02562 * 21 20 18 41 41 H 1.08994 * 109.46803 * 60.00368 * 26 6 5 42 42 H 1.09005 * 109.46541 * 179.97438 * 26 6 5 43 43 H 1.08999 * 109.47189 * 300.00510 * 27 26 6 44 44 H 1.09001 * 109.47035 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5701 -0.7217 1.2490 6 6 4.0796 -1.4434 -0.0002 7 1 3.7158 -2.4710 0.0001 8 7 5.5445 -1.4444 -0.0002 9 16 6.3716 -2.7690 -0.5515 10 8 7.7529 -2.4665 -0.4112 11 8 5.7594 -3.9025 0.0481 12 6 6.0628 -2.8937 -2.2818 13 6 5.3403 -3.9541 -2.7799 14 6 5.0907 -4.0514 -4.1399 15 6 5.5748 -3.0909 -5.0147 16 6 6.3042 -2.0253 -4.5397 17 6 6.5586 -1.9128 -3.1601 18 6 7.3074 -0.8224 -2.6605 19 1 7.1585 -0.4850 -1.6454 20 6 8.2413 -0.1802 -3.4814 21 7 8.6417 -0.7518 -4.5880 22 14 8.9162 1.4929 -2.9971 23 1 8.3085 1.9182 -1.7106 24 1 10.3906 1.4063 -2.8428 25 1 8.5863 2.4841 -4.0524 26 6 3.5695 -0.7222 -1.2495 27 6 2.0395 -0.7217 -1.2492 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6767 -1.7488 1.2494 32 1 1.6767 -0.2073 2.1392 33 1 3.9334 -1.2359 2.1388 34 1 3.9338 0.3058 1.2487 35 1 6.0301 -0.6693 0.3227 36 1 4.9628 -4.7108 -2.1081 37 1 4.5188 -4.8843 -4.5215 38 1 5.3784 -3.1792 -6.0731 39 1 6.6801 -1.2779 -5.2229 40 1 9.2893 -0.3068 -5.1568 41 1 3.9333 0.3053 -1.2498 42 1 3.9329 -1.2361 -2.1395 43 1 1.6759 -1.7492 -1.2489 44 1 1.6762 -0.2083 -2.1394 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601340477.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:17 Heat of formation + Delta-G solvation = -108.126796 kcal Electronic energy + Delta-G solvation = -26700.855548 eV Core-core repulsion = 23128.399344 eV Total energy + Delta-G solvation = -3572.456203 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.91836 -39.34258 -38.02128 -36.66387 -35.80447 -35.59166 -32.06626 -31.58768 -31.44476 -31.24438 -27.35033 -26.38720 -23.65084 -23.28530 -22.94517 -22.12670 -20.90342 -20.07893 -19.49133 -18.45490 -17.92209 -17.31238 -17.05295 -16.07986 -16.02476 -15.48247 -15.12542 -15.07345 -15.03441 -14.91023 -14.47806 -14.36581 -14.02954 -13.65792 -13.28957 -13.11941 -13.04917 -12.99096 -12.92850 -12.82831 -12.79526 -12.76646 -12.54514 -12.44988 -12.11410 -11.96065 -11.78522 -11.63589 -11.42364 -11.29459 -11.17333 -11.01400 -10.95066 -10.12979 -9.78901 -9.43471 -8.81511 -6.58666 -0.14418 0.55773 0.98253 1.36121 1.49477 1.51740 2.15189 2.36167 2.62945 3.01152 3.49892 3.76339 3.83423 3.89582 3.99322 4.20160 4.31927 4.33416 4.43457 4.50707 4.58814 4.62030 4.68431 4.73599 4.76781 4.90678 4.98049 5.00646 5.08130 5.15682 5.16483 5.25446 5.31025 5.31755 5.35983 5.46381 5.52252 5.53263 5.56472 5.69070 5.72954 5.83337 6.02538 6.10068 6.27897 6.49332 6.68409 6.85464 8.15291 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011549 B = 0.005475 C = 0.005114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.916146 B = 5113.209203 C = 5474.304372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.073 0.927 4 C -0.108 4.108 5 C -0.119 4.119 6 C 0.153 3.847 7 H 0.076 0.924 8 N -1.106 6.106 9 S 2.714 3.286 10 O -1.002 7.002 11 O -1.012 7.012 12 C -0.788 4.788 13 C -0.014 4.014 14 C -0.252 4.252 15 C -0.075 4.075 16 C -0.187 4.187 17 C 0.168 3.832 18 C -0.469 4.469 19 H 0.092 0.908 20 C 0.039 3.961 21 N -0.805 5.805 22 Si 0.974 3.026 23 H -0.247 1.247 24 H -0.269 1.269 25 H -0.255 1.255 26 C -0.136 4.136 27 C -0.108 4.108 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.419 0.581 36 H 0.118 0.882 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.112 0.888 40 H 0.295 0.705 41 H 0.068 0.932 42 H 0.047 0.953 43 H 0.060 0.940 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.128 5.696 6.465 14.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.091 0.909 4 C -0.146 4.146 5 C -0.158 4.158 6 C 0.046 3.954 7 H 0.094 0.906 8 N -0.865 5.865 9 S 2.811 3.189 10 O -0.992 6.992 11 O -1.002 7.002 12 C -0.882 4.882 13 C -0.034 4.034 14 C -0.272 4.272 15 C -0.094 4.094 16 C -0.207 4.207 17 C 0.163 3.837 18 C -0.497 4.497 19 H 0.110 0.890 20 C -0.179 4.179 21 N -0.428 5.428 22 Si 0.794 3.206 23 H -0.170 1.170 24 H -0.194 1.194 25 H -0.179 1.179 26 C -0.175 4.175 27 C -0.147 4.147 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.255 0.745 36 H 0.136 0.864 37 H 0.142 0.858 38 H 0.138 0.862 39 H 0.130 0.870 40 H 0.106 0.894 41 H 0.087 0.913 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.525 4.984 6.759 14.261 hybrid contribution 0.765 0.748 -0.965 1.441 sum -10.760 5.732 5.795 13.499 Atomic orbital electron populations 1.21796 0.94209 1.01987 1.02089 1.21163 0.96167 0.99564 0.94059 0.90864 1.21578 0.93434 1.01265 0.98360 1.21821 0.96890 1.01175 0.95905 1.20899 0.77414 1.00384 0.96705 0.90583 1.55406 1.15730 1.34956 1.80404 1.00455 0.72002 0.72370 0.74056 1.93488 1.33540 1.84648 1.87515 1.93414 1.78579 1.51019 1.77176 1.30062 1.27209 1.08082 1.22870 1.20531 0.92576 0.94105 0.96191 1.20831 1.10257 1.02915 0.93166 1.21203 0.95253 0.93949 0.98951 1.21522 1.02688 1.00319 0.96186 1.17223 0.85897 0.88631 0.91939 1.20142 1.17055 1.12309 1.00227 0.89025 1.26817 0.95034 1.02496 0.93564 1.69843 1.23418 1.37943 1.11638 0.85260 0.78581 0.76285 0.80513 1.16959 1.19398 1.17923 1.22022 0.96788 1.01281 0.97440 1.21551 0.93539 1.00974 0.98598 0.91686 0.92637 0.92711 0.91812 0.89755 0.91019 0.90355 0.74526 0.86364 0.85760 0.86216 0.87011 0.89378 0.91318 0.93402 0.92143 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.19 71.98 0.66 -1.51 16 2 C -0.09 -1.68 2.72 -10.79 -0.03 -1.71 16 3 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 4 C -0.11 -1.96 5.20 30.60 0.16 -1.80 16 5 C -0.12 -2.62 5.47 30.60 0.17 -2.45 16 6 C 0.15 4.52 2.82 44.99 0.13 4.64 16 7 H 0.08 2.42 7.43 -2.38 -0.02 2.40 16 8 N -1.11 -38.31 4.76 -169.38 -0.81 -39.11 16 9 S 2.71 120.62 4.96 -56.49 -0.28 120.34 16 10 O -1.00 -51.18 16.35 -128.00 -2.09 -53.27 16 11 O -1.01 -46.52 16.23 -128.00 -2.08 -48.60 16 12 C -0.79 -37.77 5.11 22.73 0.12 -37.66 16 13 C -0.01 -0.64 9.54 22.22 0.21 -0.43 16 14 C -0.25 -10.64 10.05 22.46 0.23 -10.42 16 15 C -0.07 -3.30 10.02 22.22 0.22 -3.07 16 16 C -0.19 -9.32 8.68 22.73 0.20 -9.12 16 17 C 0.17 8.57 5.55 -21.29 -0.12 8.46 16 18 C -0.47 -23.71 7.66 23.46 0.18 -23.53 16 19 H 0.09 4.35 5.74 -2.91 -0.02 4.33 16 20 C 0.04 1.89 5.18 85.26 0.44 2.33 16 21 N -0.80 -40.12 10.94 21.83 0.24 -39.88 16 22 Si 0.97 36.33 29.59 68.60 2.03 38.36 16 23 H -0.25 -8.76 7.11 99.48 0.71 -8.06 16 24 H -0.27 -9.97 7.11 99.48 0.71 -9.27 16 25 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 26 C -0.14 -4.03 5.53 30.59 0.17 -3.86 16 27 C -0.11 -2.55 5.20 30.59 0.16 -2.39 16 28 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.55 16 35 H 0.42 12.90 8.61 -96.74 -0.83 12.07 16 36 H 0.12 4.92 7.32 -2.91 -0.02 4.90 16 37 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 38 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 39 H 0.11 5.70 6.22 -2.91 -0.02 5.68 16 40 H 0.30 13.14 8.30 -92.71 -0.77 12.37 16 41 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.05 1.74 7.25 -2.38 -0.02 1.72 16 43 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -63.89 358.60 0.07 -63.83 By element: Atomic # 1 Polarization: 40.70 SS G_CDS: 0.17 Total: 40.87 kcal Atomic # 6 Polarization: -85.42 SS G_CDS: 2.89 Total: -82.53 kcal Atomic # 7 Polarization: -78.42 SS G_CDS: -0.57 Total: -78.99 kcal Atomic # 8 Polarization: -97.70 SS G_CDS: -4.17 Total: -101.87 kcal Atomic # 14 Polarization: 36.33 SS G_CDS: 2.03 Total: 38.36 kcal Atomic # 16 Polarization: 120.62 SS G_CDS: -0.28 Total: 120.34 kcal Total: -63.89 0.07 -63.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601340477.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.301 kcal (2) G-P(sol) polarization free energy of solvation -63.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds