Wall clock time and date at job start Tue Mar 31 2020 13:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47215 * 2 1 4 4 H 1.09002 * 109.99659 * 56.64209 * 3 2 1 5 5 C 1.54332 * 109.99185 * 295.59901 * 3 2 1 6 6 C 1.55150 * 103.02093 * 218.66655 * 5 3 2 7 7 H 1.09000 * 111.00482 * 153.38682 * 6 5 3 8 8 C 1.53005 * 111.03917 * 277.21962 * 6 5 3 9 9 C 1.54905 * 101.58521 * 35.30993 * 6 5 3 10 10 N 1.47026 * 109.88216 * 177.73366 * 3 2 1 11 11 S 1.65602 * 125.64965 * 298.39570 * 10 3 2 12 12 O 1.42099 * 106.40083 * 156.38185 * 11 10 3 13 13 O 1.42099 * 106.40348 * 23.46420 * 11 10 3 14 14 C 1.76200 * 107.21778 * 269.92382 * 11 10 3 15 15 C 1.38660 * 119.87467 * 269.97992 * 14 11 10 16 16 C 1.38617 * 120.49999 * 180.02562 * 15 14 11 17 17 C 1.37640 * 120.24842 * 359.71231 * 16 15 14 18 18 C 1.40703 * 119.74294 * 0.58322 * 17 16 15 19 19 C 1.41395 * 120.24421 * 179.69926 * 18 17 16 20 20 H 1.08002 * 120.00029 * 156.29337 * 19 18 17 21 21 C 1.39942 * 119.99517 * 336.01905 * 19 18 17 22 22 N 1.30820 * 120.00575 * 344.37383 * 21 19 18 23 23 Si 1.86806 * 119.99556 * 164.37678 * 21 19 18 24 24 H 1.48502 * 109.47257 * 89.99963 * 23 21 19 25 25 H 1.48502 * 109.46975 * 209.99694 * 23 21 19 26 26 H 1.48492 * 109.47462 * 329.99569 * 23 21 19 27 27 C 1.37599 * 119.87512 * 90.00054 * 14 11 10 28 28 H 1.08996 * 109.47042 * 306.19335 * 1 2 3 29 29 H 1.09008 * 109.46712 * 66.18897 * 1 2 3 30 30 H 1.08994 * 109.46865 * 186.18688 * 1 2 3 31 31 H 1.09001 * 109.47464 * 239.99497 * 2 1 3 32 32 H 1.09003 * 109.47206 * 119.99724 * 2 1 3 33 33 H 1.09009 * 110.84711 * 100.19911 * 5 3 2 34 34 H 1.08997 * 110.66876 * 337.05219 * 5 3 2 35 35 H 1.08996 * 109.47472 * 173.67391 * 8 6 5 36 36 H 1.09009 * 109.47025 * 293.67085 * 8 6 5 37 37 H 1.08994 * 109.47148 * 53.66973 * 8 6 5 38 38 H 1.09005 * 110.36881 * 204.15660 * 9 6 5 39 39 H 1.08997 * 110.46225 * 81.87307 * 9 6 5 40 40 H 1.07999 * 119.75047 * 0.02562 * 15 14 11 41 41 H 1.07995 * 119.87110 * 180.02562 * 16 15 14 42 42 H 1.07990 * 120.12911 * 180.30625 * 17 16 15 43 43 H 0.96997 * 120.00741 * 180.02562 * 22 21 19 44 44 H 1.07998 * 120.12636 * 359.97238 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6333 1.9817 0.8556 5 6 1.6251 2.1488 -1.3080 6 6 2.8682 3.0125 -1.6484 7 1 2.9354 3.1949 -2.7209 8 6 2.8512 4.3302 -0.8710 9 6 4.0230 2.0989 -1.1671 10 7 3.5092 1.4534 0.0547 11 16 4.4340 0.8362 1.2820 12 8 5.7067 0.5481 0.7196 13 8 3.6341 -0.1397 1.9354 14 6 4.6870 2.1334 2.4473 15 6 5.7835 2.9725 2.3195 16 6 5.9954 3.9968 3.2291 17 6 5.1140 4.1953 4.2676 18 6 4.0014 3.3460 4.4108 19 6 3.0928 3.5363 5.4773 20 1 2.0785 3.1746 5.3937 21 6 3.5093 4.1883 6.6434 22 7 4.7854 4.3492 6.8827 23 14 2.2432 4.8289 7.8583 24 1 1.9355 3.7726 8.8558 25 1 2.7849 6.0238 8.5539 26 1 1.0026 5.1995 7.1312 27 6 3.7961 2.3096 3.4810 28 1 -0.3633 0.6068 0.8293 29 1 -0.3633 0.4149 -0.9403 30 1 -0.3633 -1.0216 0.1107 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 0.7500 2.7787 -1.1479 34 1 1.4348 1.4196 -2.0954 35 1 3.7855 4.8649 -1.0416 36 1 2.0153 4.9419 -1.2110 37 1 2.7403 4.1228 0.1932 38 1 4.9073 2.6938 -0.9386 39 1 4.2559 1.3491 -1.9231 40 1 6.4777 2.8270 1.5050 41 1 6.8525 4.6446 3.1197 42 1 5.2783 4.9969 4.9722 43 1 5.0741 4.8007 7.6911 44 1 2.9427 1.6550 3.5786 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619488519.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:18 Heat of formation + Delta-G solvation = -87.840750 kcal Electronic energy + Delta-G solvation = -26374.034889 eV Core-core repulsion = 22802.458354 eV Total energy + Delta-G solvation = -3571.576534 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.16739 -39.47143 -38.34393 -36.94804 -35.70073 -34.56413 -32.91798 -31.94635 -31.59799 -28.99891 -27.40657 -27.34615 -24.50411 -23.59165 -22.83948 -22.13687 -20.95421 -20.28341 -19.32386 -18.55981 -17.77992 -17.16465 -16.70167 -16.58819 -16.25943 -15.50596 -15.43522 -15.22210 -15.06446 -14.70591 -14.35337 -14.33755 -13.79106 -13.70038 -13.55655 -13.32233 -13.25869 -13.09165 -13.07424 -13.01240 -12.86352 -12.77891 -12.61864 -12.55346 -12.22608 -12.16770 -11.77605 -11.66252 -11.58952 -11.48952 -11.37433 -11.17893 -11.12798 -9.96247 -9.81756 -9.59199 -8.73415 -6.48372 -0.57674 0.38632 0.81235 1.35899 1.43555 1.51175 2.07522 2.16503 2.54758 2.75269 3.23179 3.48343 3.60619 3.78924 3.96033 4.15665 4.25816 4.33989 4.37398 4.39174 4.54563 4.60632 4.71380 4.77596 4.79863 4.82851 4.88407 4.96488 5.00408 5.04102 5.08858 5.17732 5.20505 5.21910 5.27975 5.30246 5.37921 5.44159 5.50256 5.53828 5.58189 5.65072 5.86008 5.91573 6.07596 6.49999 6.77465 6.81918 8.23419 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.014138 B = 0.004438 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.984121 B = 6307.442908 C = 6746.757718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.160 4.160 3 C 0.145 3.855 4 H 0.058 0.942 5 C -0.108 4.108 6 C -0.092 4.092 7 H 0.121 0.879 8 C -0.147 4.147 9 C 0.112 3.888 10 N -1.003 6.003 11 S 2.723 3.277 12 O -0.988 6.988 13 O -0.985 6.985 14 C -0.640 4.640 15 C -0.150 4.150 16 C -0.122 4.122 17 C -0.141 4.141 18 C 0.062 3.938 19 C -0.494 4.494 20 H 0.080 0.920 21 C 0.035 3.965 22 N -0.825 5.825 23 Si 0.986 3.014 24 H -0.264 1.264 25 H -0.263 1.263 26 H -0.256 1.256 27 C -0.144 4.144 28 H 0.049 0.951 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.031 0.969 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.126 0.874 41 H 0.126 0.874 42 H 0.118 0.882 43 H 0.292 0.708 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.040 0.350 -15.537 17.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.199 4.199 3 C 0.039 3.961 4 H 0.077 0.923 5 C -0.147 4.147 6 C -0.112 4.112 7 H 0.139 0.861 8 C -0.205 4.205 9 C -0.012 4.012 10 N -0.842 5.842 11 S 2.818 3.182 12 O -0.979 6.979 13 O -0.975 6.975 14 C -0.728 4.728 15 C -0.171 4.171 16 C -0.141 4.141 17 C -0.160 4.160 18 C 0.059 3.941 19 C -0.523 4.523 20 H 0.098 0.902 21 C -0.180 4.180 22 N -0.451 5.451 23 Si 0.806 3.194 24 H -0.188 1.188 25 H -0.187 1.187 26 H -0.180 1.180 27 C -0.165 4.165 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.113 0.887 34 H 0.117 0.883 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.050 0.950 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.136 0.864 43 H 0.103 0.897 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.477 -0.463 -15.233 16.560 hybrid contribution 0.007 0.813 1.611 1.805 sum -6.469 0.350 -13.622 15.084 Atomic orbital electron populations 1.21676 0.93284 1.02242 1.02739 1.22304 0.98236 0.96099 1.03285 1.21603 0.77381 0.96633 1.00453 0.92345 1.22791 0.98178 0.98787 0.94920 1.22366 0.93444 0.93770 1.01590 0.86138 1.21786 1.02460 0.96741 0.99469 1.22387 0.97755 0.95887 0.85175 1.58445 1.16676 1.76536 1.32553 1.00638 0.71911 0.73484 0.72158 1.93471 1.41849 1.84047 1.78495 1.93459 1.70071 1.58000 1.75983 1.30357 1.05378 1.21117 1.15965 1.20416 0.97397 0.97757 1.01516 1.21140 0.99259 0.98468 0.95254 1.21723 0.96669 0.99861 0.97784 1.18059 0.93335 0.90248 0.92461 1.19871 0.98663 1.34311 0.99477 0.90203 1.26805 0.97893 0.93076 1.00270 1.69805 1.17398 1.31878 1.26042 0.85141 0.78439 0.78597 0.77214 1.18826 1.18706 1.17972 1.20767 0.99610 0.98605 0.97505 0.93171 0.90320 0.92164 0.90610 0.91923 0.88722 0.88320 0.92422 0.90815 0.94959 0.91187 0.89616 0.85588 0.85569 0.86395 0.89710 0.87569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.63 71.98 0.69 -2.06 16 2 C -0.16 -4.04 5.36 30.59 0.16 -3.88 16 3 C 0.14 3.72 2.77 45.34 0.13 3.84 16 4 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 5 C -0.11 -1.80 5.11 31.78 0.16 -1.64 16 6 C -0.09 -1.58 3.72 -9.40 -0.03 -1.61 16 7 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 8 C -0.15 -3.03 9.24 71.98 0.67 -2.37 16 9 C 0.11 2.59 6.44 86.85 0.56 3.15 16 10 N -1.00 -30.11 3.39 -484.25 -1.64 -31.75 16 11 S 2.72 107.78 5.89 -56.49 -0.33 107.44 16 12 O -0.99 -41.69 16.85 -128.00 -2.16 -43.85 16 13 O -0.98 -43.02 14.37 -128.00 -1.84 -44.86 16 14 C -0.64 -29.25 5.97 22.22 0.13 -29.11 16 15 C -0.15 -6.68 9.53 22.46 0.21 -6.46 16 16 C -0.12 -5.60 10.02 22.22 0.22 -5.38 16 17 C -0.14 -7.29 8.70 22.73 0.20 -7.09 16 18 C 0.06 3.37 5.59 -21.29 -0.12 3.26 16 19 C -0.49 -26.45 9.07 23.46 0.21 -26.24 16 20 H 0.08 4.11 7.89 -2.91 -0.02 4.09 16 21 C 0.03 1.71 5.19 85.26 0.44 2.16 16 22 N -0.83 -42.29 10.79 21.83 0.24 -42.05 16 23 Si 0.99 37.31 29.59 68.60 2.03 39.34 16 24 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 25 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 26 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 27 C -0.14 -7.30 9.26 22.73 0.21 -7.09 16 28 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.08 1.11 7.55 -2.38 -0.02 1.10 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.08 1.68 8.09 -2.39 -0.02 1.66 16 32 H 0.06 2.04 5.63 -2.39 -0.01 2.02 16 33 H 0.09 1.34 8.05 -2.38 -0.02 1.32 16 34 H 0.10 1.24 7.76 -2.39 -0.02 1.22 16 35 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 37 H 0.03 0.87 7.83 -2.39 -0.02 0.85 16 38 H 0.07 1.69 8.05 -2.38 -0.02 1.67 16 39 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.13 4.97 7.60 -2.91 -0.02 4.94 16 41 H 0.13 4.92 8.06 -2.91 -0.02 4.89 16 42 H 0.12 6.25 6.04 -2.92 -0.02 6.24 16 43 H 0.29 13.41 8.30 -92.71 -0.77 12.65 16 44 H 0.11 5.28 7.60 -2.91 -0.02 5.26 16 Total: -1.00 -66.75 363.23 1.13 -65.63 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: 0.98 Total: 30.62 kcal Atomic # 6 Polarization: -84.37 SS G_CDS: 3.85 Total: -80.52 kcal Atomic # 7 Polarization: -72.40 SS G_CDS: -1.40 Total: -73.80 kcal Atomic # 8 Polarization: -84.71 SS G_CDS: -4.00 Total: -88.70 kcal Atomic # 14 Polarization: 37.31 SS G_CDS: 2.03 Total: 39.34 kcal Atomic # 16 Polarization: 107.78 SS G_CDS: -0.33 Total: 107.44 kcal Total: -66.75 1.13 -65.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619488519.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.216 kcal (2) G-P(sol) polarization free energy of solvation -66.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds