Wall clock time and date at job start Tue Mar 31 2020 13:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42897 * 109.46858 * 2 1 4 4 C 1.52999 * 109.47381 * 120.00398 * 2 1 3 5 5 C 1.50695 * 109.46916 * 180.32435 * 4 2 1 6 6 O 1.21290 * 120.00342 * 353.99386 * 5 4 2 7 7 N 1.34778 * 119.99592 * 173.99587 * 5 4 2 8 8 C 1.40089 * 119.99955 * 185.03175 * 7 5 4 9 9 C 1.38713 * 120.07453 * 33.25831 * 8 7 5 10 10 C 1.38189 * 120.02063 * 179.97438 * 9 8 7 11 11 C 1.38550 * 120.17565 * 0.02562 * 10 9 8 12 12 F 1.35104 * 119.92028 * 179.97438 * 11 10 9 13 13 C 1.38342 * 120.15661 * 0.02562 * 11 10 9 14 14 C 1.38741 * 119.97333 * 359.97438 * 13 11 10 15 15 O 1.35779 * 120.08573 * 180.30038 * 14 13 11 16 16 C 1.34808 * 116.99627 * 354.36300 * 15 14 13 17 17 H 1.07997 * 120.00248 * 5.08126 * 16 15 14 18 18 C 1.38641 * 119.99676 * 185.08101 * 16 15 14 19 19 N 1.31572 * 120.00240 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00052 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47121 * 89.99834 * 20 18 16 22 22 H 1.48500 * 109.47471 * 210.00010 * 20 18 16 23 23 H 1.48505 * 109.47227 * 330.00120 * 20 18 16 24 24 C 1.52997 * 109.46592 * 240.00481 * 2 1 3 25 25 C 1.52996 * 117.50149 * 128.75016 * 24 2 1 26 26 C 1.52994 * 117.50587 * 60.08506 * 24 2 1 27 27 H 1.09003 * 109.46909 * 304.91557 * 1 2 3 28 28 H 1.08997 * 109.47380 * 64.91131 * 1 2 3 29 29 H 1.09000 * 109.47338 * 184.91622 * 1 2 3 30 30 H 0.96699 * 113.99877 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.47227 * 60.31974 * 4 2 1 32 32 H 1.09007 * 109.46834 * 300.32070 * 4 2 1 33 33 H 0.96996 * 120.00320 * 5.03184 * 7 5 4 34 34 H 1.08000 * 119.98740 * 359.97323 * 9 8 7 35 35 H 1.07996 * 119.91130 * 180.02562 * 10 9 8 36 36 H 1.07994 * 120.01175 * 180.02562 * 13 11 10 37 37 H 0.96993 * 119.99952 * 179.97438 * 19 18 16 38 38 H 1.09000 * 115.54787 * 274.41194 * 24 2 1 39 39 H 1.09009 * 117.49885 * 359.97438 * 25 24 2 40 40 H 1.09000 * 117.50426 * 145.01713 * 25 24 2 41 41 H 1.08994 * 117.50275 * 214.97699 * 26 24 2 42 42 H 1.09007 * 117.49600 * 0.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5470 -0.7143 1.2531 6 8 4.1540 -0.2825 0.2959 7 7 4.2203 -1.1879 2.3203 8 6 5.6165 -1.0853 2.3696 9 6 6.2545 0.0020 1.7908 10 6 7.6318 0.1024 1.8405 11 6 8.3796 -0.8813 2.4673 12 9 9.7260 -0.7782 2.5125 13 6 7.7510 -1.9693 3.0461 14 6 6.3685 -2.0765 2.9998 15 8 5.7488 -3.1403 3.5724 16 6 6.5379 -4.1149 4.0669 17 1 7.6107 -3.9909 4.0715 18 6 5.9723 -5.2766 4.5696 19 7 4.6653 -5.4280 4.5635 20 14 7.0657 -6.6269 5.2555 21 1 7.2818 -6.3994 6.7070 22 1 6.4113 -7.9445 5.0530 23 1 8.3733 -6.6103 4.5518 24 6 2.0399 -0.7212 -1.2493 25 6 3.0762 0.0040 -2.1102 26 6 1.6373 -0.1483 -2.6096 27 1 -0.3633 0.5882 0.8427 28 1 -0.3634 0.4357 -0.9307 29 1 -0.3634 -1.0239 0.0881 30 1 2.9703 1.4236 -0.0004 31 1 1.6815 -1.7506 1.2463 32 1 1.6721 -0.2108 2.1392 33 1 3.7381 -1.5999 3.0542 34 1 5.6745 0.7702 1.3011 35 1 8.1267 0.9498 1.3897 36 1 8.3361 -2.7345 3.5344 37 1 4.2696 -6.2409 4.9149 38 1 2.1252 -1.8045 -1.1648 39 1 3.3945 0.9951 -1.7867 40 1 3.8430 -0.6023 -2.5924 41 1 1.4581 -0.8546 -3.4201 42 1 1.0094 0.7428 -2.6146 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755972097.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:33 Heat of formation + Delta-G solvation = -124.004353 kcal Electronic energy + Delta-G solvation = -27710.809545 eV Core-core repulsion = 23571.451663 eV Total energy + Delta-G solvation = -4139.357882 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.84431 -41.83833 -40.72608 -39.29657 -37.90782 -35.88473 -35.49784 -34.32280 -33.18771 -31.15947 -30.38981 -28.61672 -27.38295 -24.66184 -23.92786 -23.22202 -23.03655 -21.53344 -20.72808 -20.15681 -19.53014 -18.35262 -18.21340 -17.77298 -17.11036 -16.98573 -16.62542 -16.55600 -16.28750 -15.95847 -15.54488 -15.40651 -15.22026 -15.05560 -14.84220 -14.06138 -13.90166 -13.74071 -13.64555 -13.47457 -13.30748 -13.08649 -12.98239 -12.84923 -12.59459 -12.32481 -12.17471 -12.15992 -11.94941 -11.68593 -11.32907 -11.21497 -11.08813 -10.84359 -10.75834 -10.42866 -9.56672 -8.75823 -8.52890 -6.18625 0.16851 0.45460 1.36048 1.42493 1.50896 1.61234 2.09928 2.16513 2.66619 2.98062 3.00847 3.19280 3.32654 3.44884 3.62138 3.78590 3.81970 3.93918 4.13629 4.18174 4.22851 4.34300 4.45802 4.54212 4.61707 4.69402 4.77222 4.85645 4.91085 4.94886 5.00302 5.02927 5.18549 5.22099 5.29435 5.33037 5.34678 5.35634 5.39531 5.55246 5.91591 6.02291 6.49342 6.75460 6.92118 7.17449 7.60568 8.67696 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012215 B = 0.003914 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.714189 B = 7151.589053 C = 8802.361920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.179 3.821 3 O -0.570 6.570 4 C -0.162 4.162 5 C 0.510 3.490 6 O -0.541 6.541 7 N -0.654 5.654 8 C 0.065 3.935 9 C -0.047 4.047 10 C -0.203 4.203 11 C 0.120 3.880 12 F -0.146 7.146 13 C -0.267 4.267 14 C 0.129 3.871 15 O -0.202 6.202 16 C -0.417 4.417 17 H 0.097 0.903 18 C -0.007 4.007 19 N -0.904 5.904 20 Si 1.009 2.991 21 H -0.263 1.263 22 H -0.270 1.270 23 H -0.260 1.260 24 C -0.178 4.178 25 C -0.150 4.150 26 C -0.168 4.168 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.382 0.618 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.415 0.585 34 H 0.156 0.844 35 H 0.158 0.842 36 H 0.133 0.867 37 H 0.275 0.725 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.097 0.903 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.284 9.226 -7.111 13.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.138 3.862 3 O -0.381 6.381 4 C -0.202 4.202 5 C 0.300 3.700 6 O -0.420 6.420 7 N -0.298 5.298 8 C -0.030 4.030 9 C -0.067 4.067 10 C -0.223 4.223 11 C 0.100 3.900 12 F -0.125 7.125 13 C -0.288 4.288 14 C 0.075 3.925 15 O -0.108 6.108 16 C -0.493 4.493 17 H 0.115 0.885 18 C -0.207 4.207 19 N -0.540 5.540 20 Si 0.830 3.170 21 H -0.188 1.188 22 H -0.195 1.195 23 H -0.184 1.184 24 C -0.197 4.197 25 C -0.187 4.187 26 C -0.205 4.205 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.104 0.896 30 H 0.234 0.766 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.252 0.748 34 H 0.174 0.826 35 H 0.175 0.825 36 H 0.150 0.850 37 H 0.084 0.916 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.094 0.906 41 H 0.115 0.885 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.899 9.458 -7.688 14.006 hybrid contribution 1.471 -1.427 0.911 2.243 sum -5.428 8.031 -6.777 11.827 Atomic orbital electron populations 1.21755 0.90366 1.03573 1.03384 1.20432 0.95018 0.80992 0.89746 1.86412 1.28510 1.26389 1.96740 1.22524 0.89721 1.05408 1.02555 1.21258 0.91219 0.76598 0.80903 1.90627 1.70668 1.47228 1.33430 1.43391 1.04325 1.59833 1.22272 1.17146 0.83746 0.95504 1.06581 1.20731 0.93631 0.95162 0.97216 1.20882 0.93680 1.01073 1.06676 1.17489 0.76496 0.95986 0.99995 1.91428 1.30003 1.96191 1.94861 1.20941 0.94593 1.02004 1.11258 1.19213 0.90742 0.88504 0.94009 1.83886 1.35212 1.26082 1.65590 1.21714 0.91214 0.95464 1.40865 0.88543 1.26344 0.97990 0.99466 0.96901 1.70107 1.11265 1.28434 1.44236 0.84703 0.77470 0.76050 0.78821 1.18761 1.19471 1.18395 1.22852 1.05430 0.98845 0.92573 1.22609 0.91825 1.01664 1.02628 1.23028 0.98170 1.03051 0.96215 0.91217 0.91340 0.89575 0.76581 0.86442 0.86163 0.74829 0.82617 0.82459 0.84959 0.91588 0.88918 0.88965 0.90630 0.88457 0.88365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 8.76 71.98 0.63 -1.62 16 2 C 0.18 3.85 0.92 -10.79 -0.01 3.84 16 3 O -0.57 -13.89 12.11 -133.16 -1.61 -15.50 16 4 C -0.16 -3.53 4.96 29.85 0.15 -3.39 16 5 C 0.51 14.90 7.06 87.66 0.62 15.52 16 6 O -0.54 -17.02 9.05 12.76 0.12 -16.91 16 7 N -0.65 -22.16 5.21 -303.04 -1.58 -23.73 16 8 C 0.07 2.54 6.30 38.23 0.24 2.78 16 9 C -0.05 -1.60 8.66 22.37 0.19 -1.41 16 10 C -0.20 -6.71 10.02 22.33 0.22 -6.49 16 11 C 0.12 4.54 7.29 22.37 0.16 4.71 16 12 F -0.15 -5.27 17.26 44.97 0.78 -4.50 16 13 C -0.27 -11.58 9.14 22.41 0.20 -11.37 16 14 C 0.13 5.90 6.66 22.69 0.15 6.05 16 15 O -0.20 -10.76 9.29 -22.84 -0.21 -10.98 16 16 C -0.42 -22.46 9.49 67.92 0.64 -21.81 16 17 H 0.10 4.92 5.21 -2.91 -0.02 4.90 16 18 C -0.01 -0.37 5.49 84.83 0.47 0.09 16 19 N -0.90 -50.17 13.67 21.61 0.30 -49.88 16 20 Si 1.01 40.42 29.55 68.60 2.03 42.45 16 21 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 22 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 23 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 24 C -0.18 -4.15 4.01 -10.80 -0.04 -4.20 16 25 C -0.15 -3.71 7.91 30.62 0.24 -3.46 16 26 C -0.17 -3.44 9.61 30.62 0.29 -3.14 16 27 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.07 1.13 7.13 -2.39 -0.02 1.11 16 29 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.38 9.57 5.37 -74.06 -0.40 9.18 16 31 H 0.12 2.33 8.14 -2.39 -0.02 2.32 16 32 H 0.12 2.20 8.14 -2.38 -0.02 2.18 16 33 H 0.42 13.94 8.53 -92.71 -0.79 13.15 16 34 H 0.16 4.73 6.40 -2.91 -0.02 4.72 16 35 H 0.16 4.14 8.06 -2.91 -0.02 4.12 16 36 H 0.13 5.89 5.64 -2.91 -0.02 5.87 16 37 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 38 H 0.09 2.32 8.11 -2.39 -0.02 2.30 16 39 H 0.09 2.34 6.29 -2.38 -0.01 2.32 16 40 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.10 1.91 7.59 -2.38 -0.02 1.90 16 Total: -1.00 -61.80 349.23 3.88 -57.92 By element: Atomic # 1 Polarization: 45.13 SS G_CDS: -0.10 Total: 45.03 kcal Atomic # 6 Polarization: -28.07 SS G_CDS: 4.17 Total: -23.90 kcal Atomic # 7 Polarization: -72.33 SS G_CDS: -1.28 Total: -73.61 kcal Atomic # 8 Polarization: -41.68 SS G_CDS: -1.71 Total: -43.39 kcal Atomic # 9 Polarization: -5.27 SS G_CDS: 0.78 Total: -4.50 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Total: -61.80 3.88 -57.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755972097.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.083 kcal (2) G-P(sol) polarization free energy of solvation -61.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds