Wall clock time and date at job start Tue Mar 31 2020 13:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50702 * 120.00470 * 2 1 4 4 N 1.46493 * 109.47033 * 125.00000 * 3 2 1 5 5 C 1.46498 * 120.00399 * 275.00224 * 4 3 2 6 6 C 1.50703 * 109.47003 * 275.00408 * 5 4 3 7 7 H 1.07996 * 119.99990 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99890 * 180.02562 * 6 5 4 9 9 N 1.31520 * 120.00167 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99980 * 179.97438 * 8 6 5 11 11 H 1.48510 * 109.47181 * 89.99775 * 10 8 6 12 12 H 1.48497 * 109.47167 * 209.99494 * 10 8 6 13 13 H 1.48493 * 109.47295 * 329.99767 * 10 8 6 14 14 S 1.65602 * 119.99747 * 95.00290 * 4 3 2 15 15 O 1.42092 * 104.27876 * 333.92906 * 14 4 3 16 16 O 1.42098 * 104.27847 * 206.06636 * 14 4 3 17 17 C 1.81408 * 104.44772 * 90.00088 * 14 4 3 18 18 C 1.52997 * 109.46973 * 180.02562 * 17 14 4 19 19 C 1.52995 * 109.47085 * 179.97438 * 18 17 14 20 20 C 1.50707 * 109.47301 * 179.97438 * 19 18 17 21 21 C 1.38238 * 119.99792 * 90.00016 * 20 19 18 22 22 C 1.38235 * 119.99712 * 179.97438 * 21 20 19 23 23 C 1.38234 * 120.00220 * 359.97124 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00179 * 269.97953 * 20 19 18 26 26 H 1.07999 * 120.00449 * 179.97438 * 1 2 3 27 27 H 1.08002 * 119.99914 * 359.97438 * 1 2 3 28 28 H 1.08002 * 119.99790 * 180.02562 * 2 1 3 29 29 H 1.09007 * 109.46569 * 4.99980 * 3 2 1 30 30 H 1.09002 * 109.46973 * 245.00730 * 3 2 1 31 31 H 1.08997 * 109.46808 * 35.00041 * 5 4 3 32 32 H 1.08997 * 109.47324 * 155.00263 * 5 4 3 33 33 H 0.96994 * 119.99831 * 180.02562 * 9 8 6 34 34 H 1.08992 * 109.47499 * 60.00005 * 17 14 4 35 35 H 1.08999 * 109.46513 * 299.99674 * 17 14 4 36 36 H 1.08995 * 109.47671 * 59.99598 * 18 17 14 37 37 H 1.09004 * 109.46984 * 299.99614 * 18 17 14 38 38 H 1.09005 * 109.47610 * 59.99944 * 19 18 17 39 39 H 1.09000 * 109.47256 * 299.99285 * 19 18 17 40 40 H 1.08005 * 120.00068 * 359.97438 * 21 20 19 41 41 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 42 42 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 43 43 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 44 44 H 1.07999 * 119.99968 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5286 1.7619 2.4523 6 6 2.5993 3.2644 2.5450 7 1 2.9555 3.8411 1.7042 8 6 2.2102 3.9027 3.7035 9 7 1.7768 3.2003 4.7275 10 14 2.2985 5.7650 3.8187 11 1 1.0136 6.3509 3.3588 12 1 2.5476 6.1626 5.2276 13 1 3.4042 6.2621 2.9611 14 16 4.5713 0.8757 0.9172 15 8 4.5314 -0.0150 -0.1892 16 8 4.9849 0.4304 2.2017 17 6 5.4291 2.4099 0.4687 18 6 6.9134 2.1165 0.2412 19 6 7.6367 3.4103 -0.1376 20 6 9.0989 3.1215 -0.3611 21 6 9.5499 2.7730 -1.6205 22 6 10.8912 2.5085 -1.8256 23 6 11.7814 2.5932 -0.7715 24 6 11.3296 2.9365 0.4890 25 6 9.9890 3.2054 0.6931 26 1 -0.5401 -0.9353 -0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8499 -0.9353 -0.0004 29 1 1.3586 2.1316 0.0896 30 1 2.6213 1.4026 -0.9315 31 1 1.4985 1.4370 2.5982 32 1 3.1614 1.3202 3.2220 33 1 1.5027 3.6494 5.5424 34 1 5.3212 3.1355 1.2748 35 1 4.9949 2.8149 -0.4454 36 1 7.0210 1.3910 -0.5651 37 1 7.3478 1.7111 1.1551 38 1 7.5293 4.1362 0.6684 39 1 7.2023 3.8152 -1.0516 40 1 8.8544 2.7073 -2.4442 41 1 11.2435 2.2359 -2.8094 42 1 12.8294 2.3870 -0.9319 43 1 12.0244 2.9983 1.3135 44 1 9.6368 3.4784 1.6769 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915816751.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:35 Heat of formation + Delta-G solvation = -40.701059 kcal Electronic energy + Delta-G solvation = -24901.815056 eV Core-core repulsion = 21332.282652 eV Total energy + Delta-G solvation = -3569.532404 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.43531 -36.60594 -36.30393 -35.38228 -35.19684 -33.21525 -31.89616 -31.27824 -31.01824 -27.50054 -26.76193 -24.92599 -22.82945 -22.70358 -22.02023 -20.89504 -19.65870 -18.18224 -17.01356 -16.79573 -16.49423 -16.08195 -15.84665 -15.52751 -15.11739 -14.82034 -14.47378 -14.23013 -13.72983 -13.62612 -13.51179 -13.21321 -12.99117 -12.48290 -12.35903 -12.20435 -12.10451 -11.90620 -11.72842 -11.49073 -11.27805 -11.22617 -11.17492 -11.09731 -10.88415 -10.76534 -10.74576 -10.52952 -10.27355 -10.00723 -9.79319 -9.05686 -9.02884 -8.81572 -8.53017 -8.05201 -6.14496 -4.22553 0.87316 1.22799 1.26522 2.63928 3.21620 3.28801 3.29962 3.43848 3.64781 4.29611 4.35872 4.59331 4.64726 4.74412 4.85645 4.95833 5.01422 5.08716 5.16494 5.20026 5.31262 5.35427 5.38876 5.49165 5.54589 5.63777 5.69292 5.80952 5.87074 5.97275 6.00136 6.12852 6.18791 6.32787 6.33191 6.37208 6.47896 6.53469 6.87617 7.01130 7.09701 7.37431 7.42364 7.63639 7.82080 8.11090 8.82230 9.43988 10.93263 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011411 B = 0.003715 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.112050 B = 7534.671357 C = 9229.752420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.158 4.158 3 C 0.157 3.843 4 N -0.981 5.981 5 C 0.244 3.756 6 C -0.548 4.548 7 H 0.062 0.938 8 C 0.066 3.934 9 N -0.886 5.886 10 Si 0.893 3.107 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.273 1.273 14 S 2.607 3.393 15 O -0.977 6.977 16 O -0.955 6.955 17 C -0.634 4.634 18 C -0.103 4.103 19 C -0.075 4.075 20 C -0.080 4.080 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.128 4.128 24 C -0.119 4.119 25 C -0.117 4.117 26 H 0.092 0.908 27 H 0.097 0.903 28 H 0.107 0.893 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.040 0.960 32 H 0.054 0.946 33 H 0.265 0.735 34 H 0.144 0.856 35 H 0.125 0.875 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.915 -0.065 -11.965 16.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.178 4.178 3 C 0.031 3.969 4 N -0.819 5.819 5 C 0.122 3.878 6 C -0.587 4.587 7 H 0.080 0.920 8 C -0.138 4.138 9 N -0.524 5.524 10 Si 0.721 3.279 11 H -0.205 1.205 12 H -0.210 1.210 13 H -0.198 1.198 14 S 2.701 3.299 15 O -0.967 6.967 16 O -0.945 6.945 17 C -0.762 4.762 18 C -0.142 4.142 19 C -0.113 4.113 20 C -0.080 4.080 21 C -0.137 4.137 22 C -0.138 4.138 23 C -0.147 4.147 24 C -0.137 4.137 25 C -0.135 4.135 26 H 0.110 0.890 27 H 0.115 0.885 28 H 0.125 0.875 29 H 0.104 0.896 30 H 0.091 0.909 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.162 0.838 35 H 0.144 0.856 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 12.174 -0.907 -11.643 16.870 hybrid contribution -0.101 1.834 0.093 1.839 sum 12.073 0.927 -11.551 16.735 Atomic orbital electron populations 1.23763 0.95819 1.01503 1.01741 1.23450 0.96249 0.99439 0.98627 1.20179 0.93154 0.95503 0.88056 1.57391 1.24067 1.82866 1.17555 1.19232 0.97250 0.94539 0.76798 1.21582 1.45295 0.92094 0.99749 0.92010 1.24958 0.94895 0.98436 0.95509 1.69937 1.42704 1.35637 1.04102 0.86585 0.78471 0.85395 0.77473 1.20549 1.21042 1.19833 1.04909 0.74348 0.76650 0.74038 1.93522 1.86348 1.61076 1.55749 1.93565 1.82005 1.79298 1.39642 1.30767 1.07179 1.25510 1.12763 1.21262 0.91498 0.98605 1.02868 1.20606 0.90242 0.97480 1.02990 1.19994 0.95741 0.98747 0.93556 1.21109 0.95813 0.99935 0.96796 1.21140 0.93505 1.00200 0.98989 1.21137 0.99566 1.00733 0.93215 1.21165 0.95759 0.99596 0.97175 1.21166 0.93261 1.00132 0.98925 0.88954 0.88464 0.87453 0.89632 0.90892 0.94162 0.92762 0.92508 0.83787 0.85648 0.90721 0.90353 0.90154 0.90500 0.85972 0.86178 0.86304 0.86094 0.85749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.81 14.32 29.02 0.42 -2.39 16 2 C -0.16 -2.63 9.84 -36.02 -0.35 -2.98 16 3 C 0.16 2.71 5.69 -5.20 -0.03 2.68 16 4 N -0.98 -19.74 2.68 -116.95 -0.31 -20.05 16 5 C 0.24 5.96 5.41 -5.19 -0.03 5.94 16 6 C -0.55 -13.95 9.38 -34.44 -0.32 -14.28 16 7 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 8 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -25.05 13.29 55.43 0.74 -24.31 16 10 Si 0.89 20.23 29.54 -169.99 -5.02 15.21 16 11 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 14 S 2.61 49.19 5.37 -107.50 -0.58 48.61 16 15 O -0.98 -19.00 16.99 -57.54 -0.98 -19.98 16 16 O -0.95 -21.58 16.53 -57.54 -0.95 -22.53 16 17 C -0.63 -9.45 6.18 37.16 0.23 -9.22 16 18 C -0.10 -1.37 5.20 -26.74 -0.14 -1.51 16 19 C -0.07 -0.86 5.34 -27.88 -0.15 -1.01 16 20 C -0.08 -0.92 5.13 -104.62 -0.54 -1.46 16 21 C -0.12 -1.25 9.70 -39.58 -0.38 -1.63 16 22 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 23 C -0.13 -1.21 10.05 -39.58 -0.40 -1.60 16 24 C -0.12 -1.19 10.05 -39.58 -0.40 -1.58 16 25 C -0.12 -1.30 9.70 -39.58 -0.38 -1.68 16 26 H 0.09 1.20 8.06 -52.49 -0.42 0.77 16 27 H 0.10 1.37 7.84 -52.49 -0.41 0.96 16 28 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 29 H 0.09 1.45 7.76 -51.92 -0.40 1.05 16 30 H 0.07 1.08 7.61 -51.93 -0.40 0.68 16 31 H 0.04 1.04 8.11 -51.93 -0.42 0.62 16 32 H 0.05 1.47 6.82 -51.93 -0.35 1.11 16 33 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.14 2.26 8.14 -51.93 -0.42 1.84 16 35 H 0.13 1.57 8.14 -51.92 -0.42 1.15 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 39 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 40 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 41 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 43 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 44 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 386.62 15.07 5.83 5.83 Total: -1.00 -31.81 386.62 -11.27 -43.09 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -7.02 Total: 4.78 kcal Atomic # 6 Polarization: -27.67 SS G_CDS: -2.97 Total: -30.64 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: 0.42 Total: -44.36 kcal Atomic # 8 Polarization: -40.58 SS G_CDS: -1.93 Total: -42.51 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: 49.19 SS G_CDS: -0.58 Total: 48.61 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.81 -11.27 -43.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915816751.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.384 kcal (2) G-P(sol) polarization free energy of solvation -31.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds