Wall clock time and date at job start Tue Mar 31 2020 13:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50702 * 120.00470 * 2 1 4 4 N 1.46493 * 109.47033 * 125.00000 * 3 2 1 5 5 C 1.46498 * 120.00399 * 275.00224 * 4 3 2 6 6 C 1.50703 * 109.47003 * 275.00408 * 5 4 3 7 7 H 1.07996 * 119.99990 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99890 * 180.02562 * 6 5 4 9 9 N 1.31520 * 120.00167 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99980 * 179.97438 * 8 6 5 11 11 H 1.48510 * 109.47181 * 89.99775 * 10 8 6 12 12 H 1.48497 * 109.47167 * 209.99494 * 10 8 6 13 13 H 1.48493 * 109.47295 * 329.99767 * 10 8 6 14 14 S 1.65602 * 119.99747 * 95.00290 * 4 3 2 15 15 O 1.42092 * 104.27876 * 333.92906 * 14 4 3 16 16 O 1.42098 * 104.27847 * 206.06636 * 14 4 3 17 17 C 1.81408 * 104.44772 * 90.00088 * 14 4 3 18 18 C 1.52997 * 109.46973 * 180.02562 * 17 14 4 19 19 C 1.52995 * 109.47085 * 179.97438 * 18 17 14 20 20 C 1.50707 * 109.47301 * 179.97438 * 19 18 17 21 21 C 1.38238 * 119.99792 * 90.00016 * 20 19 18 22 22 C 1.38235 * 119.99712 * 179.97438 * 21 20 19 23 23 C 1.38234 * 120.00220 * 359.97124 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00179 * 269.97953 * 20 19 18 26 26 H 1.07999 * 120.00449 * 179.97438 * 1 2 3 27 27 H 1.08002 * 119.99914 * 359.97438 * 1 2 3 28 28 H 1.08002 * 119.99790 * 180.02562 * 2 1 3 29 29 H 1.09007 * 109.46569 * 4.99980 * 3 2 1 30 30 H 1.09002 * 109.46973 * 245.00730 * 3 2 1 31 31 H 1.08997 * 109.46808 * 35.00041 * 5 4 3 32 32 H 1.08997 * 109.47324 * 155.00263 * 5 4 3 33 33 H 0.96994 * 119.99831 * 180.02562 * 9 8 6 34 34 H 1.08992 * 109.47499 * 60.00005 * 17 14 4 35 35 H 1.08999 * 109.46513 * 299.99674 * 17 14 4 36 36 H 1.08995 * 109.47671 * 59.99598 * 18 17 14 37 37 H 1.09004 * 109.46984 * 299.99614 * 18 17 14 38 38 H 1.09005 * 109.47610 * 59.99944 * 19 18 17 39 39 H 1.09000 * 109.47256 * 299.99285 * 19 18 17 40 40 H 1.08005 * 120.00068 * 359.97438 * 21 20 19 41 41 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 42 42 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 43 43 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 44 44 H 1.07999 * 119.99968 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5286 1.7619 2.4523 6 6 2.5993 3.2644 2.5450 7 1 2.9555 3.8411 1.7042 8 6 2.2102 3.9027 3.7035 9 7 1.7768 3.2003 4.7275 10 14 2.2985 5.7650 3.8187 11 1 1.0136 6.3509 3.3588 12 1 2.5476 6.1626 5.2276 13 1 3.4042 6.2621 2.9611 14 16 4.5713 0.8757 0.9172 15 8 4.5314 -0.0150 -0.1892 16 8 4.9849 0.4304 2.2017 17 6 5.4291 2.4099 0.4687 18 6 6.9134 2.1165 0.2412 19 6 7.6367 3.4103 -0.1376 20 6 9.0989 3.1215 -0.3611 21 6 9.5499 2.7730 -1.6205 22 6 10.8912 2.5085 -1.8256 23 6 11.7814 2.5932 -0.7715 24 6 11.3296 2.9365 0.4890 25 6 9.9890 3.2054 0.6931 26 1 -0.5401 -0.9353 -0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8499 -0.9353 -0.0004 29 1 1.3586 2.1316 0.0896 30 1 2.6213 1.4026 -0.9315 31 1 1.4985 1.4370 2.5982 32 1 3.1614 1.3202 3.2220 33 1 1.5027 3.6494 5.5424 34 1 5.3212 3.1355 1.2748 35 1 4.9949 2.8149 -0.4454 36 1 7.0210 1.3910 -0.5651 37 1 7.3478 1.7111 1.1551 38 1 7.5293 4.1362 0.6684 39 1 7.2023 3.8152 -1.0516 40 1 8.8544 2.7073 -2.4442 41 1 11.2435 2.2359 -2.8094 42 1 12.8294 2.3870 -0.9319 43 1 12.0244 2.9983 1.3135 44 1 9.6368 3.4784 1.6769 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915816751.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:34 Heat of formation + Delta-G solvation = -58.585014 kcal Electronic energy + Delta-G solvation = -24902.590563 eV Core-core repulsion = 21332.282652 eV Total energy + Delta-G solvation = -3570.307911 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.18639 -38.16533 -37.88150 -36.91913 -36.23886 -34.98284 -33.51824 -32.20143 -31.74689 -29.31321 -27.72973 -26.50684 -24.32196 -23.44086 -23.34604 -21.75289 -20.97551 -19.70085 -18.57232 -18.30564 -17.76443 -17.52008 -17.15201 -16.69455 -16.28137 -15.94493 -15.92457 -15.37839 -15.11441 -14.71637 -14.53121 -14.23543 -14.18245 -14.08990 -13.75102 -13.36555 -13.27424 -13.24480 -13.07281 -13.01426 -12.90611 -12.86584 -12.42198 -12.34033 -12.27214 -12.05762 -11.96061 -11.88076 -11.66638 -11.65063 -11.37512 -10.56946 -10.30258 -9.80435 -9.74747 -9.56016 -8.15362 -6.30802 -0.60186 0.45930 0.51716 1.34160 1.45589 1.46142 1.56041 1.94429 2.43414 2.85809 2.96541 3.16337 3.28131 3.51853 3.80261 3.94952 4.04678 4.10753 4.16233 4.18368 4.22618 4.33563 4.38740 4.41234 4.60749 4.67355 4.69496 4.77743 4.85597 4.96517 4.98320 5.09365 5.10087 5.20830 5.22661 5.34114 5.48709 5.59690 5.64399 5.73105 5.74870 5.78014 5.81703 6.03372 6.11009 6.15192 6.82949 7.40354 8.92841 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.011411 B = 0.003715 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.112050 B = 7534.671357 C = 9229.752420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.188 4.188 3 C 0.150 3.850 4 N -0.989 5.989 5 C 0.261 3.739 6 C -0.549 4.549 7 H 0.080 0.920 8 C 0.009 3.991 9 N -0.930 5.930 10 Si 0.961 3.039 11 H -0.273 1.273 12 H -0.290 1.290 13 H -0.256 1.256 14 S 2.602 3.398 15 O -0.986 6.986 16 O -1.003 7.003 17 C -0.606 4.606 18 C -0.109 4.109 19 C -0.070 4.070 20 C -0.097 4.097 21 C -0.130 4.130 22 C -0.127 4.127 23 C -0.133 4.133 24 C -0.129 4.129 25 C -0.137 4.137 26 H 0.111 0.889 27 H 0.105 0.895 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.016 0.984 32 H 0.018 0.982 33 H 0.265 0.735 34 H 0.141 0.859 35 H 0.160 0.840 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.136 0.864 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.137 0.863 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.882 1.690 -14.304 19.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.208 4.208 3 C 0.025 3.975 4 N -0.825 5.825 5 C 0.137 3.863 6 C -0.588 4.588 7 H 0.099 0.901 8 C -0.190 4.190 9 N -0.569 5.569 10 Si 0.785 3.215 11 H -0.199 1.199 12 H -0.216 1.216 13 H -0.180 1.180 14 S 2.700 3.300 15 O -0.976 6.976 16 O -0.994 6.994 17 C -0.739 4.739 18 C -0.148 4.148 19 C -0.108 4.108 20 C -0.097 4.097 21 C -0.147 4.147 22 C -0.144 4.144 23 C -0.151 4.151 24 C -0.147 4.147 25 C -0.155 4.155 26 H 0.130 0.870 27 H 0.123 0.877 28 H 0.116 0.884 29 H 0.106 0.894 30 H 0.118 0.882 31 H 0.034 0.966 32 H 0.036 0.964 33 H 0.074 0.926 34 H 0.159 0.841 35 H 0.178 0.822 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.112 0.888 40 H 0.154 0.846 41 H 0.160 0.840 42 H 0.160 0.840 43 H 0.155 0.845 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 13.112 0.799 -14.006 19.203 hybrid contribution -0.349 1.218 0.752 1.473 sum 12.763 2.017 -13.254 18.511 Atomic orbital electron populations 1.24006 0.95269 1.02834 0.98891 1.23447 0.97056 0.98976 1.01298 1.20421 0.93261 0.95849 0.87939 1.57255 1.25360 1.83075 1.16783 1.18700 0.95072 0.94252 0.78253 1.21952 1.44198 0.92503 1.00118 0.90148 1.25873 0.94654 1.03285 0.95228 1.70088 1.44284 1.37705 1.04829 0.85517 0.79094 0.79541 0.77330 1.19874 1.21554 1.17989 1.04892 0.74059 0.77952 0.73051 1.93500 1.86378 1.62575 1.55175 1.93505 1.82534 1.81188 1.42152 1.30491 1.07803 1.21496 1.14127 1.21381 0.90202 1.00182 1.03031 1.20565 0.90359 0.96156 1.03741 1.20068 0.95647 0.99843 0.94177 1.21372 0.96700 0.99813 0.96861 1.21484 0.93266 0.99538 1.00154 1.21488 1.00852 0.99854 0.92889 1.21445 0.95675 0.99366 0.98217 1.21359 0.94077 1.00924 0.99133 0.87048 0.87660 0.88397 0.89425 0.88222 0.96616 0.96418 0.92612 0.84110 0.82212 0.89644 0.91300 0.90245 0.88756 0.84574 0.83964 0.84047 0.84531 0.85757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.89 14.32 67.78 0.97 -3.92 16 2 C -0.19 -6.21 9.84 25.65 0.25 -5.96 16 3 C 0.15 5.05 5.69 85.64 0.49 5.54 16 4 N -0.99 -40.04 2.68 -523.92 -1.41 -41.45 16 5 C 0.26 13.17 5.41 85.63 0.46 13.64 16 6 C -0.55 -27.87 9.38 25.60 0.24 -27.63 16 7 H 0.08 3.69 7.81 -2.91 -0.02 3.67 16 8 C 0.01 0.48 5.46 84.65 0.46 0.95 16 9 N -0.93 -53.81 13.29 21.45 0.28 -53.53 16 10 Si 0.96 40.93 29.54 68.60 2.03 42.95 16 11 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 12 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 13 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 14 S 2.60 98.60 5.37 -56.49 -0.30 98.29 16 15 O -0.99 -38.01 16.99 -127.65 -2.17 -40.18 16 16 O -1.00 -47.33 16.53 -127.65 -2.11 -49.44 16 17 C -0.61 -16.93 6.18 71.98 0.44 -16.48 16 18 C -0.11 -2.72 5.20 30.59 0.16 -2.56 16 19 C -0.07 -1.46 5.34 29.85 0.16 -1.30 16 20 C -0.10 -2.07 5.13 -19.86 -0.10 -2.18 16 21 C -0.13 -2.45 9.70 22.27 0.22 -2.23 16 22 C -0.13 -2.12 10.05 22.27 0.22 -1.90 16 23 C -0.13 -2.21 10.05 22.27 0.22 -1.98 16 24 C -0.13 -2.39 10.05 22.27 0.22 -2.17 16 25 C -0.14 -2.92 9.70 22.27 0.22 -2.71 16 26 H 0.11 2.70 8.06 -2.91 -0.02 2.68 16 27 H 0.11 2.82 7.84 -2.91 -0.02 2.79 16 28 H 0.10 3.38 8.06 -2.91 -0.02 3.36 16 29 H 0.09 2.87 7.76 -2.38 -0.02 2.85 16 30 H 0.10 2.75 7.61 -2.39 -0.02 2.73 16 31 H 0.02 0.85 8.11 -2.39 -0.02 0.83 16 32 H 0.02 1.02 6.82 -2.39 -0.02 1.00 16 33 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 34 H 0.14 4.18 8.14 -2.39 -0.02 4.16 16 35 H 0.16 3.40 8.14 -2.39 -0.02 3.38 16 36 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 38 H 0.08 1.65 8.09 -2.38 -0.02 1.63 16 39 H 0.09 1.62 8.09 -2.39 -0.02 1.60 16 40 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 41 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 42 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 43 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 44 H 0.12 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -70.01 386.62 1.92 -68.10 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 0.95 Total: 26.14 kcal Atomic # 6 Polarization: -55.53 SS G_CDS: 4.64 Total: -50.89 kcal Atomic # 7 Polarization: -93.85 SS G_CDS: -1.12 Total: -94.97 kcal Atomic # 8 Polarization: -85.34 SS G_CDS: -4.28 Total: -89.62 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.95 kcal Atomic # 16 Polarization: 98.60 SS G_CDS: -0.30 Total: 98.29 kcal Total: -70.01 1.92 -68.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915816751.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.512 kcal (2) G-P(sol) polarization free energy of solvation -70.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds