Wall clock time and date at job start Tue Mar 31 2020 14:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81402 * 102.99844 * 2 1 4 4 C 1.53001 * 109.47302 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47174 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.47172 * 304.99315 * 5 4 3 7 7 C 1.53009 * 109.46853 * 185.00063 * 5 4 3 8 8 N 1.46497 * 109.47474 * 65.00145 * 5 4 3 9 9 C 1.34779 * 120.00029 * 205.00059 * 8 5 4 10 10 O 1.21280 * 119.99730 * 359.97438 * 9 8 5 11 11 C 1.50697 * 119.99832 * 179.97438 * 9 8 5 12 12 C 1.50703 * 109.47029 * 180.02562 * 11 9 8 13 13 C 1.38326 * 119.96036 * 269.72148 * 12 11 9 14 14 C 1.38280 * 120.13593 * 180.27023 * 13 12 11 15 15 C 1.38125 * 120.06813 * 0.02562 * 14 13 12 16 16 C 1.38857 * 119.92941 * 359.97438 * 15 14 13 17 17 O 1.35759 * 120.06714 * 179.97438 * 16 15 14 18 18 C 1.34831 * 116.99718 * 354.48542 * 17 16 15 19 19 H 1.07998 * 120.00057 * 5.06548 * 18 17 16 20 20 C 1.38654 * 119.99581 * 185.05723 * 18 17 16 21 21 N 1.31558 * 119.99951 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 120.00181 * 0.02562 * 20 18 17 23 23 H 1.48493 * 109.47207 * 89.99972 * 22 20 18 24 24 H 1.48498 * 109.46980 * 209.99927 * 22 20 18 25 25 H 1.48496 * 109.46974 * 329.99687 * 22 20 18 26 26 C 1.38074 * 119.96544 * 90.00097 * 12 11 9 27 27 H 1.09007 * 109.47235 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47444 * 299.99727 * 1 2 3 29 29 H 1.09003 * 109.47558 * 60.00018 * 1 2 3 30 30 H 1.08998 * 109.46993 * 59.99848 * 3 2 1 31 31 H 1.08999 * 109.47170 * 299.99832 * 3 2 1 32 32 H 1.09001 * 109.47039 * 59.99485 * 4 3 2 33 33 H 1.08999 * 109.46761 * 299.99948 * 4 3 2 34 34 H 1.08992 * 109.47211 * 60.00202 * 7 5 4 35 35 H 1.09003 * 109.46441 * 180.02562 * 7 5 4 36 36 H 1.08998 * 109.46620 * 299.99589 * 7 5 4 37 37 H 0.97001 * 119.99807 * 24.99500 * 8 5 4 38 38 H 1.08996 * 109.47426 * 60.00133 * 11 9 8 39 39 H 1.08994 * 109.47220 * 299.99909 * 11 9 8 40 40 H 1.07995 * 119.93590 * 0.26096 * 13 12 11 41 41 H 1.07998 * 119.96668 * 180.02562 * 14 13 12 42 42 H 1.08000 * 120.03457 * 179.97438 * 15 14 13 43 43 H 0.96999 * 120.00512 * 179.97438 * 21 20 18 44 44 H 1.08000 * 120.03806 * 359.69747 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7422 1.9401 -0.0006 5 6 4.0863 3.4308 0.0000 6 1 3.5934 3.9178 -0.8414 7 6 5.6012 3.6046 -0.1264 8 7 3.6280 4.0373 1.2523 9 6 3.3509 5.3554 1.3009 10 8 3.4813 6.0394 0.3079 11 6 2.8789 5.9791 2.5890 12 6 2.6405 7.4518 2.3762 13 6 3.6657 8.3556 2.5900 14 6 3.4493 9.7082 2.4012 15 6 2.2080 10.1610 1.9989 16 6 1.1769 9.2563 1.7834 17 8 -0.0444 9.6983 1.3884 18 6 -0.2239 11.0335 1.3338 19 1 0.6072 11.6980 1.5183 20 6 -1.4754 11.5532 1.0405 21 7 -1.6505 12.8560 0.9866 22 14 -2.9129 10.4037 0.7218 23 1 -3.6077 10.1134 2.0017 24 1 -3.8619 11.0477 -0.2215 25 1 -2.4120 9.1364 0.1318 26 6 1.3974 7.8981 1.9736 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8030 2.2371 0.8900 31 1 1.8031 2.2371 -0.8900 32 1 4.1608 1.4705 -0.8908 33 1 4.1615 1.4704 0.8891 34 1 5.9422 3.1534 -1.0581 35 1 5.8463 4.6667 -0.1255 36 1 6.0942 3.1175 0.7150 37 1 3.5240 3.4902 2.0465 38 1 3.6379 5.8411 3.3590 39 1 1.9506 5.5030 2.9044 40 1 4.6370 8.0041 2.9052 41 1 4.2518 10.4114 2.5686 42 1 2.0395 11.2176 1.8520 43 1 -2.5259 13.2197 0.7811 44 1 0.5975 7.1920 1.8065 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089812421.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:22 Heat of formation + Delta-G solvation = -53.736881 kcal Electronic energy + Delta-G solvation = -24191.869762 eV Core-core repulsion = 20621.772082 eV Total energy + Delta-G solvation = -3570.097680 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.06295 -39.00235 -37.04283 -36.27511 -32.83705 -32.37403 -31.92878 -30.23736 -29.39142 -29.26691 -27.07375 -25.15414 -24.34974 -22.10315 -21.58394 -20.82162 -20.18790 -17.70679 -17.24125 -17.06243 -16.66854 -16.33190 -15.46848 -15.14404 -15.02513 -14.60014 -14.37184 -14.28577 -14.05812 -13.81824 -13.70412 -13.57690 -13.40784 -13.28020 -12.80468 -12.61590 -12.48808 -12.36374 -12.14889 -11.85727 -11.73468 -11.51905 -11.28844 -11.13411 -10.82508 -10.78440 -10.70193 -10.40236 -10.14344 -9.77316 -9.36282 -9.22455 -8.84600 -8.11942 -8.09905 -7.32847 -6.38381 -4.05003 1.26090 2.03686 2.17337 2.31705 2.71246 3.11851 3.23632 3.26231 3.41875 4.26056 4.28283 4.46343 4.47329 4.55138 4.74685 4.74970 4.76163 4.95275 5.02433 5.09666 5.10887 5.16314 5.19621 5.32069 5.32668 5.35885 5.46495 5.55488 5.58449 5.70414 5.79874 5.86953 5.97210 6.14604 6.27835 6.36058 6.55700 6.81654 7.12709 7.23976 7.34437 7.40051 7.64039 7.84093 8.07563 8.26603 8.97208 9.60431 10.69577 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.012122 B = 0.002776 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.390152 B =10083.824609 C =11918.724437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.272 6.272 3 C -0.084 4.084 4 C -0.109 4.109 5 C 0.146 3.854 6 H 0.090 0.910 7 C -0.162 4.162 8 N -0.736 5.736 9 C 0.514 3.486 10 O -0.517 6.517 11 C -0.095 4.095 12 C -0.034 4.034 13 C -0.188 4.188 14 C -0.076 4.076 15 C -0.218 4.218 16 C 0.160 3.840 17 O -0.220 6.220 18 C -0.388 4.388 19 H 0.106 0.894 20 C 0.063 3.937 21 N -0.882 5.882 22 Si 0.905 3.095 23 H -0.274 1.274 24 H -0.282 1.282 25 H -0.260 1.260 26 C -0.175 4.175 27 H 0.100 0.900 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.398 0.602 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.132 0.868 43 H 0.279 0.721 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.922 -24.613 1.781 26.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 S -0.046 6.046 3 C -0.232 4.232 4 C -0.148 4.148 5 C 0.040 3.960 6 H 0.108 0.892 7 C -0.221 4.221 8 N -0.390 5.390 9 C 0.300 3.700 10 O -0.391 6.391 11 C -0.134 4.134 12 C -0.035 4.035 13 C -0.207 4.207 14 C -0.094 4.094 15 C -0.237 4.237 16 C 0.109 3.891 17 O -0.125 6.125 18 C -0.464 4.464 19 H 0.124 0.876 20 C -0.140 4.140 21 N -0.520 5.520 22 Si 0.730 3.270 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.184 1.184 26 C -0.194 4.194 27 H 0.119 0.881 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.232 0.768 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.123 0.877 41 H 0.128 0.872 42 H 0.150 0.850 43 H 0.089 0.911 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 10.288 -24.913 0.921 26.970 hybrid contribution -1.559 0.554 0.226 1.670 sum 8.730 -24.360 1.148 25.902 Atomic orbital electron populations 1.23381 0.93762 1.06525 1.05216 1.86825 1.07907 1.11731 1.98131 1.23443 1.00252 0.93875 1.05659 1.21651 0.92963 0.95807 1.04393 1.20903 0.95206 0.91747 0.88152 0.89169 1.22162 0.94909 1.03065 1.01958 1.46175 1.70136 1.09425 1.13272 1.20757 0.76863 0.81480 0.90866 1.90764 1.50586 1.61225 1.36520 1.20598 1.03150 0.94213 0.95484 1.18650 0.93308 0.92211 0.99343 1.20416 0.97859 0.93193 1.09213 1.20740 0.96099 0.95032 0.97554 1.21297 0.93476 1.00801 1.08100 1.19010 0.85612 0.92413 0.92108 1.83569 1.27698 1.26061 1.75183 1.20767 0.98372 0.77873 1.49362 0.87647 1.24450 0.97751 0.95839 0.95966 1.69646 1.24860 1.10410 1.47084 0.86192 0.80915 0.81204 0.78663 1.19920 1.20801 1.18426 1.19924 0.97305 0.93129 1.09069 0.88084 0.90341 0.90358 0.89714 0.89786 0.89402 0.90326 0.91644 0.91603 0.92420 0.76826 0.88298 0.88390 0.87744 0.87176 0.84995 0.91117 0.86944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 10.76 101.05 1.09 0.34 16 2 S -0.27 -2.17 22.38 -107.50 -2.41 -4.58 16 3 C -0.08 -0.61 5.83 37.16 0.22 -0.39 16 4 C -0.11 -0.70 4.76 -26.73 -0.13 -0.82 16 5 C 0.15 1.23 2.57 -67.93 -0.17 1.05 16 6 H 0.09 0.97 7.58 -51.93 -0.39 0.58 16 7 C -0.16 -1.31 9.48 37.16 0.35 -0.96 16 8 N -0.74 -6.39 4.53 -53.81 -0.24 -6.64 16 9 C 0.51 6.65 7.79 -10.99 -0.09 6.57 16 10 O -0.52 -9.33 15.70 5.56 0.09 -9.24 16 11 C -0.09 -1.13 5.83 -29.03 -0.17 -1.30 16 12 C -0.03 -0.59 4.37 -104.65 -0.46 -1.05 16 13 C -0.19 -3.26 9.70 -39.53 -0.38 -3.65 16 14 C -0.08 -1.44 10.04 -39.61 -0.40 -1.84 16 15 C -0.22 -4.88 9.17 -39.39 -0.36 -5.24 16 16 C 0.16 3.84 6.65 -39.11 -0.26 3.58 16 17 O -0.22 -5.96 8.59 0.02 0.00 -5.96 16 18 C -0.39 -11.18 9.95 30.89 0.31 -10.87 16 19 H 0.11 3.10 5.44 -52.49 -0.29 2.81 16 20 C 0.06 1.79 5.49 -17.52 -0.10 1.70 16 21 N -0.88 -25.86 13.96 55.48 0.77 -25.09 16 22 Si 0.90 22.03 28.62 -169.99 -4.86 17.16 16 23 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.26 -6.39 7.11 56.52 0.40 -5.99 16 26 C -0.17 -3.59 9.64 -39.40 -0.38 -3.97 16 27 H 0.10 0.52 8.14 -51.92 -0.42 0.10 16 28 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 29 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 30 H 0.08 0.60 7.75 -51.92 -0.40 0.20 16 31 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.40 2.30 8.60 -40.82 -0.35 1.94 16 38 H 0.10 0.90 8.08 -51.93 -0.42 0.48 16 39 H 0.10 0.97 8.08 -51.93 -0.42 0.55 16 40 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16 41 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 42 H 0.13 3.09 5.64 -52.49 -0.30 2.79 16 43 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.11 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 384.06 15.07 5.79 5.79 Total: -1.00 -33.58 384.06 -8.57 -42.15 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -6.78 Total: 3.28 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -0.93 Total: -16.87 kcal Atomic # 7 Polarization: -32.26 SS G_CDS: 0.53 Total: -31.72 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: 0.09 Total: -15.20 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.86 Total: 17.16 kcal Atomic # 16 Polarization: -2.17 SS G_CDS: -2.41 Total: -4.58 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.58 -8.57 -42.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089812421.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.590 kcal (2) G-P(sol) polarization free energy of solvation -33.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds