Wall clock time and date at job start Tue Mar 31 2020 13:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42903 * 109.46887 * 2 1 4 4 C 1.42899 * 113.99753 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47599 * 329.99597 * 4 3 2 6 6 C 1.52994 * 109.47060 * 90.00294 * 4 3 2 7 7 C 1.50709 * 109.46665 * 209.99728 * 4 3 2 8 8 O 1.21293 * 120.00262 * 354.99957 * 7 4 3 9 9 N 1.34780 * 119.99535 * 174.99831 * 7 4 3 10 10 C 1.40143 * 119.99608 * 174.80266 * 9 7 4 11 11 C 1.38646 * 120.10075 * 340.13848 * 10 9 7 12 12 C 1.38251 * 120.00734 * 179.97438 * 11 10 9 13 13 C 1.38297 * 120.20955 * 0.02562 * 12 11 10 14 14 C 1.38198 * 120.20336 * 0.02562 * 13 12 11 15 15 C 1.38789 * 119.98437 * 359.69763 * 14 13 12 16 16 S 1.76205 * 120.10499 * 180.29574 * 15 14 13 17 17 C 1.81400 * 102.99739 * 353.52552 * 16 15 14 18 18 H 1.09006 * 109.47073 * 49.54655 * 17 16 15 19 19 C 1.52995 * 109.47262 * 289.54315 * 17 16 15 20 20 C 1.50699 * 109.46729 * 169.54321 * 17 16 15 21 21 H 1.08004 * 120.00491 * 3.88426 * 20 17 16 22 22 C 1.37882 * 119.99777 * 183.88169 * 20 17 16 23 23 N 1.31521 * 119.99564 * 195.75708 * 22 20 17 24 24 Si 1.86795 * 120.00176 * 15.75523 * 22 20 17 25 25 H 1.48503 * 109.46949 * 95.07108 * 24 22 20 26 26 H 1.48498 * 109.47457 * 215.07329 * 24 22 20 27 27 H 1.48499 * 109.46877 * 335.07272 * 24 22 20 28 28 H 1.09004 * 109.47109 * 60.00128 * 1 2 3 29 29 H 1.09003 * 109.46867 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47410 * 300.00322 * 1 2 3 31 31 H 1.08997 * 109.47410 * 239.99678 * 2 1 3 32 32 H 1.09001 * 109.46624 * 119.99068 * 2 1 3 33 33 H 1.08997 * 109.47173 * 179.97438 * 6 4 3 34 34 H 1.09002 * 109.46953 * 299.99814 * 6 4 3 35 35 H 1.08998 * 109.47944 * 59.99483 * 6 4 3 36 36 H 0.96997 * 119.99749 * 354.53491 * 9 7 4 37 37 H 1.07995 * 119.99522 * 359.94651 * 11 10 9 38 38 H 1.08001 * 119.89226 * 179.97438 * 12 11 10 39 39 H 1.08005 * 119.90078 * 179.97438 * 13 12 11 40 40 H 1.07999 * 120.01122 * 180.02562 * 14 13 12 41 41 H 1.09008 * 109.46756 * 64.25787 * 19 17 16 42 42 H 1.08996 * 109.47036 * 184.25318 * 19 17 16 43 43 H 1.08995 * 109.47055 * 304.25566 * 19 17 16 44 44 H 0.97006 * 119.99404 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.8631 0.6018 0.5148 6 6 3.9398 1.5003 -1.4417 7 6 3.8340 2.7267 0.7110 8 8 2.9853 3.5052 1.0915 9 7 5.1378 2.9942 0.9235 10 6 5.5190 4.2202 1.4854 11 6 4.6526 5.3019 1.4470 12 6 5.0304 6.5103 2.0024 13 6 6.2718 6.6452 2.5968 14 6 7.1426 5.5729 2.6390 15 6 6.7696 4.3544 2.0891 16 16 7.8743 2.9829 2.1480 17 6 9.3920 3.7103 2.8249 18 1 9.1518 4.2850 3.7194 19 6 10.0253 4.6324 1.7810 20 6 10.3610 2.6118 3.1787 21 1 10.1170 1.5837 2.9553 22 6 11.5593 2.9192 3.7876 23 7 12.5283 2.0305 3.8182 24 14 11.8063 4.5978 4.5690 25 1 11.4976 4.5189 6.0194 26 1 13.2162 5.0266 4.3855 27 1 10.9015 5.5824 3.9231 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 5.0263 1.5868 -1.4412 34 1 3.6481 0.5843 -1.9555 35 1 3.5076 2.3586 -1.9559 36 1 5.8119 2.3366 0.6911 37 1 3.6827 5.2007 0.9829 38 1 4.3542 7.3519 1.9711 39 1 6.5620 7.5916 3.0288 40 1 8.1111 5.6815 3.1043 41 1 9.3554 5.4687 1.5809 42 1 10.9753 5.0102 2.1586 43 1 10.1961 4.0751 0.8600 44 1 13.3715 2.2470 4.2463 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066800456.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:35 Heat of formation + Delta-G solvation = -53.687680 kcal Electronic energy + Delta-G solvation = -24784.160516 eV Core-core repulsion = 21214.064969 eV Total energy + Delta-G solvation = -3570.095546 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.68408 -38.77711 -37.65007 -34.88496 -34.18963 -32.76511 -31.58185 -30.60359 -30.41258 -29.10474 -25.35931 -24.96442 -23.19760 -22.87883 -22.37680 -21.28660 -20.26009 -18.27766 -17.37608 -17.19474 -16.66409 -16.55773 -15.98209 -15.45871 -15.28208 -14.79248 -14.35948 -14.18912 -13.81315 -13.67706 -13.53348 -13.45909 -12.99708 -12.85844 -12.68608 -12.51610 -12.33648 -12.26552 -12.14892 -11.82060 -11.67085 -11.41781 -11.22681 -11.18824 -10.67249 -10.52162 -10.42379 -10.10094 -9.79936 -9.74236 -9.46462 -9.26778 -9.17286 -8.66689 -8.07942 -6.73251 -6.34128 -4.33519 1.39002 1.58801 2.19718 2.53246 2.64835 3.11767 3.20620 3.24887 3.32024 3.64541 4.00451 4.20434 4.37597 4.58242 4.66529 4.79461 4.92958 4.96013 5.05225 5.14450 5.18710 5.24503 5.37864 5.43725 5.48611 5.60775 5.69470 5.70680 5.79391 5.84178 6.04405 6.12092 6.23670 6.29040 6.33803 6.47134 6.59530 6.67615 6.75831 6.80526 7.04484 7.20452 7.32464 7.39142 8.02122 8.14455 8.68736 9.24861 10.77398 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017238 B = 0.003208 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.949743 B = 8727.250850 C = 9893.034136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.073 3.927 5 H 0.091 0.909 6 C -0.172 4.172 7 C 0.514 3.486 8 O -0.501 6.501 9 N -0.656 5.656 10 C 0.155 3.845 11 C -0.125 4.125 12 C -0.118 4.118 13 C -0.121 4.121 14 C -0.117 4.117 15 C -0.103 4.103 16 S -0.137 6.137 17 C 0.063 3.937 18 H 0.048 0.952 19 C -0.148 4.148 20 C -0.520 4.520 21 H 0.084 0.916 22 C 0.090 3.910 23 N -0.879 5.879 24 Si 0.864 3.136 25 H -0.276 1.276 26 H -0.282 1.282 27 H -0.255 1.255 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.415 0.585 37 H 0.153 0.847 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.133 0.867 41 H 0.034 0.966 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.331 0.588 -8.749 19.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.276 6.276 4 C 0.012 3.988 5 H 0.109 0.891 6 C -0.229 4.229 7 C 0.300 3.700 8 O -0.375 6.375 9 N -0.302 5.302 10 C 0.054 3.946 11 C -0.146 4.146 12 C -0.140 4.140 13 C -0.142 4.142 14 C -0.141 4.141 15 C -0.218 4.218 16 S 0.110 5.890 17 C -0.065 4.065 18 H 0.066 0.934 19 C -0.207 4.207 20 C -0.558 4.558 21 H 0.102 0.898 22 C -0.116 4.116 23 N -0.515 5.515 24 Si 0.690 3.310 25 H -0.202 1.202 26 H -0.207 1.207 27 H -0.179 1.179 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.252 0.748 37 H 0.170 0.830 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.150 0.850 41 H 0.053 0.947 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.994 -0.063 -8.775 20.019 hybrid contribution 1.166 1.524 0.849 2.098 sum -16.828 1.460 -7.926 18.658 Atomic orbital electron populations 1.21727 0.93375 1.02246 1.03412 1.22620 0.95977 0.83391 1.00315 1.88041 1.18081 1.26523 1.94960 1.21828 0.84018 0.96138 0.96858 0.89134 1.22251 1.02092 1.03948 0.94647 1.20503 0.81966 0.88126 0.79373 1.90624 1.50153 1.48178 1.48562 1.43468 1.08060 1.17414 1.61265 1.17236 0.93546 0.85546 0.98281 1.21499 1.00790 0.91039 1.01296 1.20980 0.96369 0.97091 0.99566 1.21026 0.94139 0.98425 1.00578 1.21196 1.00589 0.91919 1.00417 1.21800 0.97653 0.99714 1.02637 1.85051 1.10012 1.13394 1.80559 1.21314 0.90842 0.98240 0.96114 0.93441 1.22492 1.00112 0.98052 1.00073 1.20293 1.00214 0.93229 1.42113 0.89811 1.24791 0.94685 0.97044 0.95114 1.69929 1.03887 1.35755 1.41887 0.87162 0.78256 0.85180 0.80414 1.20182 1.20747 1.17881 0.91770 0.90979 0.91629 0.93052 0.93027 0.90528 0.90900 0.90935 0.74788 0.83011 0.86060 0.86204 0.84982 0.94717 0.92373 0.92091 0.92080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 37.16 0.38 -0.72 16 2 C 0.05 0.45 6.47 37.16 0.24 0.69 16 3 O -0.36 -4.26 9.53 -55.09 -0.52 -4.79 16 4 C 0.07 0.78 3.13 -27.88 -0.09 0.69 16 5 H 0.09 0.78 7.79 -51.93 -0.40 0.38 16 6 C -0.17 -1.44 9.48 37.15 0.35 -1.09 16 7 C 0.51 7.26 7.03 -10.98 -0.08 7.18 16 8 O -0.50 -8.68 13.41 -14.31 -0.19 -8.88 16 9 N -0.66 -9.38 5.20 -9.70 -0.05 -9.43 16 10 C 0.15 2.57 6.51 -83.43 -0.54 2.02 16 11 C -0.12 -1.99 8.78 -39.43 -0.35 -2.33 16 12 C -0.12 -1.69 10.04 -39.55 -0.40 -2.09 16 13 C -0.12 -1.79 10.04 -39.57 -0.40 -2.19 16 14 C -0.12 -2.01 8.11 -39.39 -0.32 -2.33 16 15 C -0.10 -1.84 6.07 -38.90 -0.24 -2.07 16 16 S -0.14 -2.69 19.87 -107.50 -2.14 -4.82 16 17 C 0.06 1.41 1.52 -27.89 -0.04 1.37 16 18 H 0.05 1.07 5.43 -51.92 -0.28 0.79 16 19 C -0.15 -3.04 8.10 37.16 0.30 -2.74 16 20 C -0.52 -13.76 9.02 -34.44 -0.31 -14.07 16 21 H 0.08 2.43 7.96 -52.48 -0.42 2.01 16 22 C 0.09 2.42 5.33 -17.81 -0.09 2.32 16 23 N -0.88 -25.24 13.96 55.43 0.77 -24.46 16 24 Si 0.86 19.80 25.76 -169.99 -4.38 15.42 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.25 -5.40 5.48 56.52 0.31 -5.09 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.34 7.87 -51.93 -0.41 -0.07 16 32 H 0.05 0.40 8.08 -51.93 -0.42 -0.02 16 33 H 0.08 0.58 8.12 -51.93 -0.42 0.16 16 34 H 0.07 0.48 7.87 -51.93 -0.41 0.08 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.41 5.31 7.49 -40.82 -0.31 5.01 16 37 H 0.15 2.46 5.42 -52.49 -0.28 2.18 16 38 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 40 H 0.13 2.35 4.90 -52.49 -0.26 2.10 16 41 H 0.03 0.63 6.12 -51.92 -0.32 0.31 16 42 H 0.06 1.22 4.93 -51.93 -0.26 0.97 16 43 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 364.43 15.07 5.49 5.49 Total: -1.00 -30.98 364.43 -8.96 -39.94 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -6.37 Total: 6.87 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -1.58 Total: -15.35 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.72 Total: -33.89 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -0.72 Total: -13.66 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.38 Total: 15.42 kcal Atomic # 16 Polarization: -2.69 SS G_CDS: -2.14 Total: -4.82 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.98 -8.96 -39.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066800456.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.743 kcal (2) G-P(sol) polarization free energy of solvation -30.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds