Wall clock time and date at job start Tue Mar 31 2020 13:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42903 * 109.46887 * 2 1 4 4 C 1.42899 * 113.99753 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47599 * 329.99597 * 4 3 2 6 6 C 1.52994 * 109.47060 * 90.00294 * 4 3 2 7 7 C 1.50709 * 109.46665 * 209.99728 * 4 3 2 8 8 O 1.21293 * 120.00262 * 354.99957 * 7 4 3 9 9 N 1.34780 * 119.99535 * 174.99831 * 7 4 3 10 10 C 1.40143 * 119.99608 * 174.80266 * 9 7 4 11 11 C 1.38646 * 120.10075 * 340.13848 * 10 9 7 12 12 C 1.38251 * 120.00734 * 179.97438 * 11 10 9 13 13 C 1.38297 * 120.20955 * 0.02562 * 12 11 10 14 14 C 1.38198 * 120.20336 * 0.02562 * 13 12 11 15 15 C 1.38789 * 119.98437 * 359.69763 * 14 13 12 16 16 S 1.76205 * 120.10499 * 180.29574 * 15 14 13 17 17 C 1.81400 * 102.99739 * 353.52552 * 16 15 14 18 18 H 1.09006 * 109.47073 * 49.54655 * 17 16 15 19 19 C 1.52995 * 109.47262 * 289.54315 * 17 16 15 20 20 C 1.50699 * 109.46729 * 169.54321 * 17 16 15 21 21 H 1.08004 * 120.00491 * 3.88426 * 20 17 16 22 22 C 1.37882 * 119.99777 * 183.88169 * 20 17 16 23 23 N 1.31521 * 119.99564 * 195.75708 * 22 20 17 24 24 Si 1.86795 * 120.00176 * 15.75523 * 22 20 17 25 25 H 1.48503 * 109.46949 * 95.07108 * 24 22 20 26 26 H 1.48498 * 109.47457 * 215.07329 * 24 22 20 27 27 H 1.48499 * 109.46877 * 335.07272 * 24 22 20 28 28 H 1.09004 * 109.47109 * 60.00128 * 1 2 3 29 29 H 1.09003 * 109.46867 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47410 * 300.00322 * 1 2 3 31 31 H 1.08997 * 109.47410 * 239.99678 * 2 1 3 32 32 H 1.09001 * 109.46624 * 119.99068 * 2 1 3 33 33 H 1.08997 * 109.47173 * 179.97438 * 6 4 3 34 34 H 1.09002 * 109.46953 * 299.99814 * 6 4 3 35 35 H 1.08998 * 109.47944 * 59.99483 * 6 4 3 36 36 H 0.96997 * 119.99749 * 354.53491 * 9 7 4 37 37 H 1.07995 * 119.99522 * 359.94651 * 11 10 9 38 38 H 1.08001 * 119.89226 * 179.97438 * 12 11 10 39 39 H 1.08005 * 119.90078 * 179.97438 * 13 12 11 40 40 H 1.07999 * 120.01122 * 180.02562 * 14 13 12 41 41 H 1.09008 * 109.46756 * 64.25787 * 19 17 16 42 42 H 1.08996 * 109.47036 * 184.25318 * 19 17 16 43 43 H 1.08995 * 109.47055 * 304.25566 * 19 17 16 44 44 H 0.97006 * 119.99404 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.8631 0.6018 0.5148 6 6 3.9398 1.5003 -1.4417 7 6 3.8340 2.7267 0.7110 8 8 2.9853 3.5052 1.0915 9 7 5.1378 2.9942 0.9235 10 6 5.5190 4.2202 1.4854 11 6 4.6526 5.3019 1.4470 12 6 5.0304 6.5103 2.0024 13 6 6.2718 6.6452 2.5968 14 6 7.1426 5.5729 2.6390 15 6 6.7696 4.3544 2.0891 16 16 7.8743 2.9829 2.1480 17 6 9.3920 3.7103 2.8249 18 1 9.1518 4.2850 3.7194 19 6 10.0253 4.6324 1.7810 20 6 10.3610 2.6118 3.1787 21 1 10.1170 1.5837 2.9553 22 6 11.5593 2.9192 3.7876 23 7 12.5283 2.0305 3.8182 24 14 11.8063 4.5978 4.5690 25 1 11.4976 4.5189 6.0194 26 1 13.2162 5.0266 4.3855 27 1 10.9015 5.5824 3.9231 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 5.0263 1.5868 -1.4412 34 1 3.6481 0.5843 -1.9555 35 1 3.5076 2.3586 -1.9559 36 1 5.8119 2.3366 0.6911 37 1 3.6827 5.2007 0.9829 38 1 4.3542 7.3519 1.9711 39 1 6.5620 7.5916 3.0288 40 1 8.1111 5.6815 3.1043 41 1 9.3554 5.4687 1.5809 42 1 10.9753 5.0102 2.1586 43 1 10.1961 4.0751 0.8600 44 1 13.3715 2.2470 4.2463 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066800456.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:35 Heat of formation + Delta-G solvation = -71.585667 kcal Electronic energy + Delta-G solvation = -24784.936631 eV Core-core repulsion = 21214.064969 eV Total energy + Delta-G solvation = -3570.871661 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.80827 -39.81564 -38.64955 -36.30315 -35.82669 -33.58070 -33.36392 -31.80641 -31.36055 -30.16764 -27.27294 -25.86788 -24.26265 -23.87453 -23.55257 -22.86170 -21.36747 -19.60255 -18.77669 -18.36839 -18.10208 -17.55996 -16.96365 -16.81203 -16.42679 -16.11219 -15.73362 -15.47779 -15.19032 -15.05151 -14.65197 -14.40192 -14.29453 -14.06129 -13.99279 -13.67745 -13.44683 -13.28237 -13.10443 -12.93536 -12.91982 -12.71324 -12.38157 -12.32643 -12.11330 -12.01801 -11.71968 -11.58666 -11.45617 -10.94613 -10.86304 -10.76644 -10.56543 -10.44323 -9.31456 -8.40640 -8.19709 -6.44855 0.17499 0.33175 0.71304 1.31200 1.37152 1.42842 1.44163 1.62763 1.76024 2.27981 2.78022 2.81600 2.93326 3.41379 3.82568 3.88115 3.93747 4.15321 4.18624 4.31388 4.32547 4.36766 4.46863 4.48368 4.49788 4.51137 4.56624 4.65994 4.73453 4.86213 4.87634 4.97619 5.01544 5.12495 5.14837 5.26736 5.28146 5.36257 5.41561 5.43929 5.56832 5.99323 6.05083 6.06660 6.30946 6.55921 6.91498 7.16991 8.74738 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.017238 B = 0.003208 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.949743 B = 8727.250850 C = 9893.034136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 O -0.386 6.386 4 C 0.076 3.924 5 H 0.113 0.887 6 C -0.166 4.166 7 C 0.511 3.489 8 O -0.537 6.537 9 N -0.653 5.653 10 C 0.148 3.852 11 C -0.136 4.136 12 C -0.106 4.106 13 C -0.117 4.117 14 C -0.129 4.129 15 C -0.120 4.120 16 S -0.145 6.145 17 C 0.061 3.939 18 H 0.049 0.951 19 C -0.141 4.141 20 C -0.526 4.526 21 H 0.042 0.958 22 C 0.036 3.964 23 N -0.928 5.928 24 Si 0.925 3.075 25 H -0.276 1.276 26 H -0.279 1.279 27 H -0.225 1.225 28 H 0.060 0.940 29 H 0.095 0.905 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.061 0.939 36 H 0.420 0.580 37 H 0.148 0.852 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.126 0.874 41 H 0.059 0.941 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.650 2.337 -9.245 20.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.031 4.031 3 O -0.305 6.305 4 C 0.015 3.985 5 H 0.130 0.870 6 C -0.224 4.224 7 C 0.300 3.700 8 O -0.413 6.413 9 N -0.299 5.299 10 C 0.047 3.953 11 C -0.158 4.158 12 C -0.127 4.127 13 C -0.137 4.137 14 C -0.153 4.153 15 C -0.236 4.236 16 S 0.101 5.899 17 C -0.068 4.068 18 H 0.067 0.933 19 C -0.201 4.201 20 C -0.564 4.564 21 H 0.060 0.940 22 C -0.165 4.165 23 N -0.566 5.566 24 Si 0.748 3.252 25 H -0.202 1.202 26 H -0.204 1.204 27 H -0.148 1.148 28 H 0.079 0.921 29 H 0.113 0.887 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.114 0.886 35 H 0.080 0.920 36 H 0.259 0.741 37 H 0.166 0.834 38 H 0.172 0.828 39 H 0.170 0.830 40 H 0.144 0.856 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.332 1.683 -9.291 21.515 hybrid contribution 1.421 0.924 0.964 1.950 sum -17.911 2.606 -8.327 19.923 Atomic orbital electron populations 1.21763 0.92870 1.03507 1.02546 1.22873 0.96484 0.82102 1.01610 1.88011 1.18601 1.28754 1.95162 1.21921 0.84001 0.94718 0.97906 0.86984 1.22243 1.02420 1.04656 0.93053 1.21231 0.81306 0.88895 0.78612 1.90596 1.50943 1.49683 1.50122 1.43514 1.08500 1.16991 1.60892 1.17421 0.93196 0.86578 0.98056 1.21637 1.00567 0.91673 1.01918 1.21382 0.96588 0.97284 0.97484 1.21345 0.93589 0.98913 0.99849 1.21309 1.00969 0.92398 1.00622 1.21730 0.97751 0.99335 1.04738 1.84923 1.09401 1.14650 1.80934 1.21146 0.91508 0.97178 0.96981 0.93267 1.22383 1.00244 0.98333 0.99091 1.20457 1.01372 0.92735 1.41848 0.93984 1.25649 0.94260 1.01182 0.95423 1.70058 1.04691 1.38389 1.43460 0.86177 0.78796 0.80977 0.79295 1.20153 1.20445 1.14764 0.92052 0.88651 0.93059 0.90919 0.92475 0.89737 0.88641 0.91994 0.74141 0.83444 0.82815 0.83011 0.85590 0.92222 0.92787 0.92601 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 10.28 71.98 0.74 -1.27 16 2 C 0.05 0.68 6.47 71.98 0.47 1.15 16 3 O -0.39 -8.85 9.53 -129.99 -1.24 -10.08 16 4 C 0.08 1.52 3.13 29.85 0.09 1.61 16 5 H 0.11 1.74 7.79 -2.39 -0.02 1.72 16 6 C -0.17 -2.51 9.48 71.98 0.68 -1.83 16 7 C 0.51 14.19 7.03 87.66 0.62 14.81 16 8 O -0.54 -18.59 13.41 15.92 0.21 -18.37 16 9 N -0.65 -18.30 5.20 -302.99 -1.58 -19.88 16 10 C 0.15 4.78 6.51 38.22 0.25 5.03 16 11 C -0.14 -4.12 8.78 22.37 0.20 -3.93 16 12 C -0.11 -2.70 10.04 22.29 0.22 -2.48 16 13 C -0.12 -3.04 10.04 22.27 0.22 -2.81 16 14 C -0.13 -4.13 8.11 22.39 0.18 -3.95 16 15 C -0.12 -4.17 6.07 22.71 0.14 -4.03 16 16 S -0.14 -5.67 19.87 -56.49 -1.12 -6.79 16 17 C 0.06 2.68 1.52 29.85 0.05 2.73 16 18 H 0.05 2.16 5.43 -2.39 -0.01 2.14 16 19 C -0.14 -5.61 8.10 71.98 0.58 -5.03 16 20 C -0.53 -28.50 9.02 25.60 0.23 -28.27 16 21 H 0.04 2.57 7.96 -2.91 -0.02 2.54 16 22 C 0.04 1.99 5.33 84.65 0.45 2.44 16 23 N -0.93 -54.87 13.96 21.45 0.30 -54.57 16 24 Si 0.92 40.42 25.76 68.60 1.77 42.18 16 25 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 26 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 27 H -0.23 -8.68 5.48 99.48 0.55 -8.13 16 28 H 0.06 0.84 8.14 -2.38 -0.02 0.83 16 29 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.78 7.87 -2.39 -0.02 0.76 16 32 H 0.06 0.79 8.08 -2.39 -0.02 0.77 16 33 H 0.08 1.14 8.12 -2.39 -0.02 1.12 16 34 H 0.09 1.02 7.87 -2.39 -0.02 1.00 16 35 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.42 10.57 7.49 -92.71 -0.69 9.88 16 37 H 0.15 4.66 5.42 -2.91 -0.02 4.65 16 38 H 0.15 2.89 8.06 -2.91 -0.02 2.86 16 39 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 40 H 0.13 4.17 4.90 -2.91 -0.01 4.16 16 41 H 0.06 2.05 6.12 -2.38 -0.01 2.03 16 42 H 0.05 2.16 4.93 -2.39 -0.01 2.15 16 43 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.27 14.93 8.31 -92.70 -0.77 14.16 16 Total: -1.00 -69.10 364.43 3.63 -65.47 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.16 Total: 27.86 kcal Atomic # 6 Polarization: -30.94 SS G_CDS: 5.12 Total: -25.82 kcal Atomic # 7 Polarization: -73.17 SS G_CDS: -1.28 Total: -74.44 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -1.02 Total: -28.46 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 1.77 Total: 42.18 kcal Atomic # 16 Polarization: -5.67 SS G_CDS: -1.12 Total: -6.79 kcal Total: -69.10 3.63 -65.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066800456.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.116 kcal (2) G-P(sol) polarization free energy of solvation -69.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds