Wall clock time and date at job start Tue Mar 31 2020 14:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86803 * 119.99958 * 2 1 4 4 H 1.48503 * 109.47011 * 269.99759 * 3 2 1 5 5 H 1.48499 * 109.47307 * 29.99537 * 3 2 1 6 6 H 1.48496 * 109.47158 * 150.00065 * 3 2 1 7 7 C 1.38654 * 120.00242 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00149 * 179.97438 * 7 2 1 9 9 O 1.34834 * 119.99863 * 0.02562 * 7 2 1 10 10 C 1.35749 * 116.99980 * 185.05314 * 9 7 2 11 11 C 1.38878 * 120.06776 * 354.46567 * 10 9 7 12 12 C 1.38103 * 119.92829 * 180.02562 * 11 10 9 13 13 C 1.38301 * 120.07060 * 0.02562 * 12 11 10 14 14 C 1.50692 * 119.93193 * 179.97438 * 13 12 11 15 15 N 1.46908 * 109.47087 * 90.00287 * 14 13 12 16 16 C 1.46899 * 110.99806 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.46601 * 179.97438 * 16 15 14 18 18 C 1.36635 * 120.07441 * 259.72326 * 17 16 15 19 19 C 1.38916 * 120.81219 * 179.77170 * 18 17 16 20 20 C 1.36501 * 120.63238 * 0.50767 * 19 18 17 21 21 C 1.39904 * 119.63394 * 359.75347 * 20 19 18 22 22 C 1.45932 * 134.03761 * 179.97438 * 21 20 19 23 23 N 1.30236 * 107.78864 * 180.02562 * 22 21 20 24 24 N 1.39872 * 110.09477 * 359.97438 * 23 22 21 25 25 H 0.97000 * 125.46000 * 180.02562 * 24 23 22 26 26 C 1.37043 * 109.07895 * 0.02562 * 24 23 22 27 27 C 1.38308 * 120.13681 * 0.25239 * 13 12 11 28 28 C 1.38101 * 120.06754 * 359.44438 * 27 13 12 29 29 H 0.96998 * 119.99577 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.03754 * 0.02562 * 11 10 9 31 31 H 1.08001 * 119.96465 * 179.97438 * 12 11 10 32 32 H 1.08996 * 109.47588 * 330.00500 * 14 13 12 33 33 H 1.09006 * 109.47404 * 209.99594 * 14 13 12 34 34 H 1.00900 * 110.99942 * 56.04322 * 15 14 13 35 35 H 1.08992 * 109.47212 * 299.99639 * 16 15 14 36 36 H 1.08999 * 109.47149 * 60.00193 * 16 15 14 37 37 H 1.08000 * 119.58991 * 359.97438 * 18 17 16 38 38 H 1.08005 * 119.68238 * 180.24093 * 19 18 17 39 39 H 1.08001 * 120.18285 * 179.77227 * 20 19 18 40 40 H 1.08003 * 126.10569 * 359.97438 * 22 21 20 41 41 H 1.07996 * 119.96742 * 179.71025 * 27 13 12 42 42 H 1.08005 * 120.03621 * 180.27270 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4471 2.6527 0.6999 6 1 3.5472 1.4402 0.7000 7 6 2.0090 -1.2008 0.0005 8 1 3.0889 -1.2007 0.0001 9 8 1.3348 -2.3685 0.0005 10 6 2.0701 -3.5046 0.1076 11 6 3.4573 -3.4394 0.0951 12 6 4.2024 -4.5970 0.2037 13 6 3.5687 -5.8204 0.3243 14 6 4.3848 -7.0816 0.4420 15 7 4.6562 -7.3589 1.8589 16 6 5.4512 -8.5846 2.0126 17 6 5.7095 -8.8354 3.4760 18 6 6.9134 -8.4973 4.0266 19 6 7.1662 -8.7174 5.3747 20 6 6.2190 -9.2864 6.1762 21 6 4.9802 -9.6463 5.6347 22 6 3.7731 -10.2573 6.1816 23 7 2.9086 -10.3661 5.2137 24 7 3.4508 -9.8633 4.0263 25 1 2.9983 -9.8349 3.1688 26 6 4.7237 -9.4173 4.2688 27 6 2.1873 -5.8891 0.3312 28 6 1.4366 -4.7345 0.2293 29 1 -0.4849 0.8401 0.0004 30 1 3.9528 -2.4845 0.0006 31 1 5.2812 -4.5471 0.1936 32 1 5.3275 -6.9555 -0.0905 33 1 3.8312 -7.9146 0.0084 34 1 3.7983 -7.4161 2.3869 35 1 4.9046 -9.4275 1.5900 36 1 6.4012 -8.4692 1.4909 37 1 7.6767 -8.0505 3.4067 38 1 8.1230 -8.4395 5.7918 39 1 6.4247 -9.4575 7.2225 40 1 3.6236 -10.5651 7.2060 41 1 1.6953 -6.8463 0.4208 42 1 0.3579 -4.7883 0.2392 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084022254.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:24 Heat of formation + Delta-G solvation = 84.238704 kcal Electronic energy + Delta-G solvation = -25043.242372 eV Core-core repulsion = 21375.976562 eV Total energy + Delta-G solvation = -3667.265810 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.53442 -39.10400 -37.85569 -37.00871 -35.54675 -32.86168 -32.22912 -30.70888 -30.18820 -29.92466 -29.09469 -26.09994 -25.20199 -23.51658 -22.83833 -22.19969 -21.98693 -21.29641 -20.42862 -18.00912 -17.93685 -17.05062 -16.80198 -16.08696 -15.35852 -15.23308 -14.99939 -14.68492 -14.57209 -14.48573 -14.35364 -13.87242 -13.72679 -13.56647 -13.32600 -12.77804 -12.67768 -12.40055 -12.10881 -11.98679 -11.81295 -11.54356 -11.36563 -11.22213 -11.11996 -10.81707 -10.69730 -10.58476 -10.47234 -10.43830 -9.34232 -8.90579 -8.84317 -8.51358 -8.19314 -8.16017 -7.20270 -6.46136 -4.04935 0.68923 1.28700 2.18718 2.21948 2.30615 2.45131 3.12163 3.13549 3.18438 3.51059 3.96086 4.21625 4.32528 4.37148 4.53504 4.63907 4.70438 4.90423 5.01936 5.08260 5.14752 5.23112 5.27186 5.33237 5.39835 5.52945 5.61263 5.70392 5.71457 5.78189 5.85673 6.11793 6.19472 6.22357 6.31979 6.40938 6.60707 6.67745 6.87597 6.92966 7.01262 7.07265 7.16722 7.30893 7.32373 7.39822 7.43884 7.81171 7.99062 8.99576 9.69291 10.71880 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017115 B = 0.002271 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.566998 B =12325.427062 C =12453.543928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.392 4.392 8 H 0.092 0.908 9 O -0.177 6.177 10 C 0.156 3.844 11 C -0.235 4.235 12 C -0.047 4.047 13 C -0.187 4.187 14 C 0.118 3.882 15 N -0.678 5.678 16 C 0.098 3.902 17 C -0.100 4.100 18 C -0.052 4.052 19 C -0.158 4.158 20 C -0.043 4.043 21 C -0.183 4.183 22 C 0.074 3.926 23 N -0.250 5.250 24 N -0.509 5.509 25 H 0.438 0.562 26 C 0.137 3.863 27 C -0.069 4.069 28 C -0.194 4.194 29 H 0.270 0.730 30 H 0.127 0.873 31 H 0.108 0.892 32 H 0.073 0.927 33 H 0.027 0.973 34 H 0.339 0.661 35 H 0.029 0.971 36 H 0.085 0.915 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.196 0.804 41 H 0.105 0.895 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.319 -19.655 8.837 25.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.468 4.468 8 H 0.110 0.890 9 O -0.081 6.081 10 C 0.102 3.898 11 C -0.254 4.254 12 C -0.066 4.066 13 C -0.189 4.189 14 C -0.010 4.010 15 N -0.310 5.310 16 C -0.031 4.031 17 C -0.105 4.105 18 C -0.073 4.073 19 C -0.177 4.177 20 C -0.063 4.063 21 C -0.191 4.191 22 C -0.124 4.124 23 N -0.063 5.063 24 N -0.224 5.224 25 H 0.282 0.718 26 C 0.021 3.979 27 C -0.088 4.088 28 C -0.213 4.213 29 H 0.080 0.920 30 H 0.144 0.856 31 H 0.126 0.874 32 H 0.091 0.909 33 H 0.045 0.955 34 H 0.157 0.843 35 H 0.047 0.953 36 H 0.104 0.896 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.213 0.787 41 H 0.123 0.877 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 12.218 -19.417 8.490 24.462 hybrid contribution 0.299 0.511 -0.396 0.712 sum 12.517 -18.906 8.094 24.076 Atomic orbital electron populations 1.70043 1.05984 1.27700 1.46040 1.25301 0.95846 0.98866 0.96511 0.85708 0.78964 0.80034 0.78718 1.19867 1.20231 1.19134 1.21340 0.91830 0.80800 1.52829 0.89017 1.83976 1.34418 1.11498 1.78170 1.19397 0.90341 0.88019 0.92007 1.21172 0.93766 0.98974 1.11536 1.20566 0.98332 0.91515 0.96177 1.19072 0.93038 0.93970 1.12800 1.20655 0.98385 0.94257 0.87715 1.60650 1.24487 1.34838 1.10998 1.20843 0.99520 0.91120 0.91596 1.18569 0.93130 1.03401 0.95350 1.20662 0.95603 0.95917 0.95125 1.20681 1.00074 1.03079 0.93877 1.20339 0.90737 0.95644 0.99603 1.19910 0.96865 1.09355 0.92974 1.25099 0.89777 0.98461 0.99025 1.76580 1.22169 1.16058 0.91471 1.45962 1.10920 1.55360 1.10181 0.71817 1.18681 0.86828 0.97394 0.95002 1.20458 0.92986 0.96536 0.98810 1.20162 0.99472 0.90348 1.11325 0.92001 0.85555 0.87436 0.90882 0.95457 0.84296 0.95253 0.89613 0.85157 0.85524 0.85495 0.78683 0.87665 0.86635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.45 13.67 55.48 0.76 -24.69 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.60 29.55 -169.99 -5.02 15.58 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.39 -11.02 9.49 30.89 0.29 -10.72 16 8 H 0.09 2.39 5.20 -52.49 -0.27 2.11 16 9 O -0.18 -5.10 9.76 0.04 0.00 -5.10 16 10 C 0.16 3.81 6.65 -39.11 -0.26 3.55 16 11 C -0.24 -5.14 9.17 -39.39 -0.36 -5.50 16 12 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 13 C -0.19 -3.13 5.40 -104.58 -0.56 -3.70 16 14 C 0.12 1.51 5.81 -4.98 -0.03 1.48 16 15 N -0.68 -8.26 6.48 -116.34 -0.75 -9.01 16 16 C 0.10 0.95 5.83 -4.97 -0.03 0.92 16 17 C -0.10 -1.02 5.38 -104.83 -0.56 -1.59 16 18 C -0.05 -0.47 9.58 -39.91 -0.38 -0.85 16 19 C -0.16 -1.29 9.97 -39.96 -0.40 -1.69 16 20 C -0.04 -0.36 10.07 -39.58 -0.40 -0.75 16 21 C -0.18 -1.86 6.37 -105.21 -0.67 -2.53 16 22 C 0.07 0.69 12.28 -15.15 -0.19 0.50 16 23 N -0.25 -2.81 12.55 31.87 0.40 -2.41 16 24 N -0.51 -5.43 7.37 32.36 0.24 -5.19 16 25 H 0.44 3.90 8.96 -182.77 -1.64 2.26 16 26 C 0.14 1.50 7.04 -84.17 -0.59 0.91 16 27 C -0.07 -1.21 9.69 -39.61 -0.38 -1.60 16 28 C -0.19 -4.11 9.99 -39.39 -0.39 -4.50 16 29 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.13 2.77 5.64 -52.49 -0.30 2.48 16 31 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 33 H 0.03 0.32 8.08 -51.93 -0.42 -0.10 16 34 H 0.34 4.35 8.71 -39.29 -0.34 4.01 16 35 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.09 0.75 7.98 -51.93 -0.41 0.34 16 37 H 0.13 0.97 8.01 -52.49 -0.42 0.55 16 38 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 39 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.20 1.03 8.06 -52.48 -0.42 0.61 16 41 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 42 H 0.12 2.38 8.06 -52.48 -0.42 1.96 16 LS Contribution 364.04 15.07 5.49 5.49 Total: -1.00 -32.74 364.04 -10.61 -43.35 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -6.32 Total: 8.33 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: -5.40 Total: -26.35 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.64 Total: -41.30 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: 0.00 Total: -5.10 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.74 -10.61 -43.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084022254.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.587 kcal (2) G-P(sol) polarization free energy of solvation -32.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds