Wall clock time and date at job start Tue Mar 31 2020 14:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31564 * 1 3 3 Si 1.86803 * 119.99958 * 2 1 4 4 H 1.48503 * 109.47011 * 269.99759 * 3 2 1 5 5 H 1.48499 * 109.47307 * 29.99537 * 3 2 1 6 6 H 1.48496 * 109.47158 * 150.00065 * 3 2 1 7 7 C 1.38654 * 120.00242 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00149 * 179.97438 * 7 2 1 9 9 O 1.34834 * 119.99863 * 0.02562 * 7 2 1 10 10 C 1.35749 * 116.99980 * 185.05314 * 9 7 2 11 11 C 1.38878 * 120.06776 * 354.46567 * 10 9 7 12 12 C 1.38103 * 119.92829 * 180.02562 * 11 10 9 13 13 C 1.38301 * 120.07060 * 0.02562 * 12 11 10 14 14 C 1.50692 * 119.93193 * 179.97438 * 13 12 11 15 15 N 1.46908 * 109.47087 * 90.00287 * 14 13 12 16 16 C 1.46899 * 110.99806 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.46601 * 179.97438 * 16 15 14 18 18 C 1.36635 * 120.07441 * 259.72326 * 17 16 15 19 19 C 1.38916 * 120.81219 * 179.77170 * 18 17 16 20 20 C 1.36501 * 120.63238 * 0.50767 * 19 18 17 21 21 C 1.39904 * 119.63394 * 359.75347 * 20 19 18 22 22 C 1.45932 * 134.03761 * 179.97438 * 21 20 19 23 23 N 1.30236 * 107.78864 * 180.02562 * 22 21 20 24 24 N 1.39872 * 110.09477 * 359.97438 * 23 22 21 25 25 H 0.97000 * 125.46000 * 180.02562 * 24 23 22 26 26 C 1.37043 * 109.07895 * 0.02562 * 24 23 22 27 27 C 1.38308 * 120.13681 * 0.25239 * 13 12 11 28 28 C 1.38101 * 120.06754 * 359.44438 * 27 13 12 29 29 H 0.96998 * 119.99577 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.03754 * 0.02562 * 11 10 9 31 31 H 1.08001 * 119.96465 * 179.97438 * 12 11 10 32 32 H 1.08996 * 109.47588 * 330.00500 * 14 13 12 33 33 H 1.09006 * 109.47404 * 209.99594 * 14 13 12 34 34 H 1.00900 * 110.99942 * 56.04322 * 15 14 13 35 35 H 1.08992 * 109.47212 * 299.99639 * 16 15 14 36 36 H 1.08999 * 109.47149 * 60.00193 * 16 15 14 37 37 H 1.08000 * 119.58991 * 359.97438 * 18 17 16 38 38 H 1.08005 * 119.68238 * 180.24093 * 19 18 17 39 39 H 1.08001 * 120.18285 * 179.77227 * 20 19 18 40 40 H 1.08003 * 126.10569 * 359.97438 * 22 21 20 41 41 H 1.07996 * 119.96742 * 179.71025 * 27 13 12 42 42 H 1.08005 * 120.03621 * 180.27270 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4471 2.6527 0.6999 6 1 3.5472 1.4402 0.7000 7 6 2.0090 -1.2008 0.0005 8 1 3.0889 -1.2007 0.0001 9 8 1.3348 -2.3685 0.0005 10 6 2.0701 -3.5046 0.1076 11 6 3.4573 -3.4394 0.0951 12 6 4.2024 -4.5970 0.2037 13 6 3.5687 -5.8204 0.3243 14 6 4.3848 -7.0816 0.4420 15 7 4.6562 -7.3589 1.8589 16 6 5.4512 -8.5846 2.0126 17 6 5.7095 -8.8354 3.4760 18 6 6.9134 -8.4973 4.0266 19 6 7.1662 -8.7174 5.3747 20 6 6.2190 -9.2864 6.1762 21 6 4.9802 -9.6463 5.6347 22 6 3.7731 -10.2573 6.1816 23 7 2.9086 -10.3661 5.2137 24 7 3.4508 -9.8633 4.0263 25 1 2.9983 -9.8349 3.1688 26 6 4.7237 -9.4173 4.2688 27 6 2.1873 -5.8891 0.3312 28 6 1.4366 -4.7345 0.2293 29 1 -0.4849 0.8401 0.0004 30 1 3.9528 -2.4845 0.0006 31 1 5.2812 -4.5471 0.1936 32 1 5.3275 -6.9555 -0.0905 33 1 3.8312 -7.9146 0.0084 34 1 3.7983 -7.4161 2.3869 35 1 4.9046 -9.4275 1.5900 36 1 6.4012 -8.4692 1.4909 37 1 7.6767 -8.0505 3.4067 38 1 8.1230 -8.4395 5.7918 39 1 6.4247 -9.4575 7.2225 40 1 3.6236 -10.5651 7.2060 41 1 1.6953 -6.8463 0.4208 42 1 0.3579 -4.7883 0.2392 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084022254.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:23 Heat of formation + Delta-G solvation = 62.680708 kcal Electronic energy + Delta-G solvation = -25044.177196 eV Core-core repulsion = 21375.976562 eV Total energy + Delta-G solvation = -3668.200634 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.21997 -40.80541 -38.86395 -38.26956 -36.61953 -34.36378 -33.56241 -31.82573 -31.64144 -30.70488 -30.15615 -27.65853 -26.60745 -24.62073 -23.64457 -23.53272 -22.87601 -22.11609 -21.85279 -19.85412 -18.86408 -18.61121 -17.66159 -16.98437 -16.47006 -16.23470 -16.12448 -16.04275 -15.69194 -15.57474 -15.52085 -15.31482 -14.96150 -14.76221 -14.48883 -14.32740 -14.04231 -13.59734 -13.22269 -12.98789 -12.95716 -12.74515 -12.57409 -12.45075 -12.30365 -12.14968 -12.09722 -11.89689 -11.71888 -11.22511 -11.18199 -10.80707 -9.79193 -9.61158 -9.41394 -8.94191 -8.83826 -8.48551 -6.16866 0.01535 0.58615 0.60250 0.68024 1.34148 1.43424 1.52025 1.55226 1.77495 2.17011 2.73547 2.87402 3.12602 3.50484 3.54405 3.65779 3.75079 3.84141 3.96772 4.05859 4.08475 4.18839 4.26684 4.38194 4.49380 4.56687 4.58211 4.64550 4.71014 4.82212 4.87247 5.01665 5.07786 5.08429 5.14830 5.28895 5.48242 5.54475 5.58935 5.66725 5.70833 5.79675 5.98844 6.01733 6.05112 6.23094 6.32291 6.33768 6.61263 6.96253 7.77030 8.74858 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017115 B = 0.002271 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.566998 B =12325.427062 C =12453.543928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.019 2.981 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.253 1.253 7 C -0.414 4.414 8 H 0.101 0.899 9 O -0.233 6.233 10 C 0.113 3.887 11 C -0.244 4.244 12 C -0.048 4.048 13 C -0.159 4.159 14 C 0.121 3.879 15 N -0.687 5.687 16 C 0.104 3.896 17 C -0.118 4.118 18 C -0.056 4.056 19 C -0.164 4.164 20 C -0.042 4.042 21 C -0.206 4.206 22 C 0.080 3.920 23 N -0.284 5.284 24 N -0.516 5.516 25 H 0.440 0.560 26 C 0.120 3.880 27 C -0.062 4.062 28 C -0.207 4.207 29 H 0.273 0.727 30 H 0.117 0.883 31 H 0.139 0.861 32 H 0.090 0.910 33 H 0.049 0.951 34 H 0.334 0.666 35 H 0.038 0.962 36 H 0.099 0.901 37 H 0.146 0.854 38 H 0.151 0.849 39 H 0.154 0.846 40 H 0.229 0.771 41 H 0.144 0.856 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.620 -21.583 9.737 28.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.176 1.176 7 C -0.490 4.490 8 H 0.119 0.881 9 O -0.140 6.140 10 C 0.063 3.937 11 C -0.264 4.264 12 C -0.066 4.066 13 C -0.160 4.160 14 C -0.006 4.006 15 N -0.318 5.318 16 C -0.024 4.024 17 C -0.123 4.123 18 C -0.077 4.077 19 C -0.183 4.183 20 C -0.063 4.063 21 C -0.214 4.214 22 C -0.118 4.118 23 N -0.097 5.097 24 N -0.231 5.231 25 H 0.285 0.715 26 C 0.004 3.996 27 C -0.080 4.080 28 C -0.226 4.226 29 H 0.082 0.918 30 H 0.135 0.865 31 H 0.156 0.844 32 H 0.108 0.892 33 H 0.067 0.933 34 H 0.151 0.849 35 H 0.056 0.944 36 H 0.117 0.883 37 H 0.164 0.836 38 H 0.169 0.831 39 H 0.172 0.828 40 H 0.246 0.754 41 H 0.162 0.838 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 15.558 -21.411 9.387 28.082 hybrid contribution -0.550 0.711 -0.589 1.075 sum 15.007 -20.700 8.798 27.039 Atomic orbital electron populations 1.70190 1.08068 1.28815 1.48965 1.26614 0.96861 1.02793 0.95832 0.84583 0.77808 0.74475 0.79325 1.18662 1.19567 1.17642 1.21830 0.92521 0.81453 1.53188 0.88122 1.83940 1.36023 1.12640 1.81415 1.19954 0.91685 0.87941 0.94114 1.21274 0.93031 1.00145 1.11903 1.20930 0.99775 0.90827 0.95117 1.19630 0.93108 0.95280 1.07995 1.20665 0.98751 0.92486 0.88740 1.60592 1.24419 1.36699 1.10134 1.20841 0.99657 0.90199 0.91699 1.18696 0.93548 1.04391 0.95626 1.20993 0.95563 0.95243 0.95894 1.21036 1.01080 1.02565 0.93635 1.20717 0.89920 0.94597 1.01047 1.20289 0.97904 1.10107 0.93081 1.25724 0.89020 0.97024 1.00042 1.76536 1.23390 1.17593 0.92188 1.45974 1.11072 1.55773 1.10301 0.71506 1.18974 0.87038 0.97816 0.95777 1.20880 0.93528 0.96717 0.96900 1.20430 0.99819 0.90718 1.11682 0.91829 0.86476 0.84360 0.89159 0.93323 0.84895 0.94362 0.88298 0.83615 0.83117 0.82822 0.75435 0.83847 0.87185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.47 13.67 21.61 0.30 -57.18 16 2 C -0.02 -1.37 5.49 84.83 0.47 -0.90 16 3 Si 1.02 43.40 29.55 68.60 2.03 45.43 16 4 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 7 C -0.41 -24.54 9.49 67.92 0.64 -23.89 16 8 H 0.10 5.49 5.20 -2.91 -0.02 5.47 16 9 O -0.23 -14.35 9.76 -22.77 -0.22 -14.58 16 10 C 0.11 5.76 6.65 22.58 0.15 5.91 16 11 C -0.24 -10.82 9.17 22.39 0.21 -10.61 16 12 C -0.05 -1.66 9.69 22.25 0.22 -1.45 16 13 C -0.16 -4.82 5.40 -19.84 -0.11 -4.93 16 14 C 0.12 2.57 5.81 85.55 0.50 3.07 16 15 N -0.69 -14.34 6.48 -521.98 -3.38 -17.72 16 16 C 0.10 1.68 5.83 85.56 0.50 2.18 16 17 C -0.12 -2.13 5.38 -20.00 -0.11 -2.24 16 18 C -0.06 -0.86 9.58 22.06 0.21 -0.64 16 19 C -0.16 -2.18 9.97 22.03 0.22 -1.96 16 20 C -0.04 -0.59 10.07 22.27 0.22 -0.37 16 21 C -0.21 -3.80 6.37 -20.24 -0.13 -3.93 16 22 C 0.08 1.34 12.28 86.92 1.07 2.41 16 23 N -0.28 -6.14 12.55 -53.09 -0.67 -6.81 16 24 N -0.52 -10.48 7.37 -51.53 -0.38 -10.86 16 25 H 0.44 7.47 8.96 -213.47 -1.91 5.56 16 26 C 0.12 2.44 7.04 39.21 0.28 2.71 16 27 C -0.06 -2.05 9.69 22.25 0.22 -1.83 16 28 C -0.21 -8.96 9.99 22.39 0.22 -8.74 16 29 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 30 H 0.12 5.30 5.64 -2.91 -0.02 5.28 16 31 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 32 H 0.09 1.70 8.08 -2.39 -0.02 1.68 16 33 H 0.05 0.88 8.08 -2.38 -0.02 0.86 16 34 H 0.33 7.64 8.71 -89.69 -0.78 6.86 16 35 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.10 1.34 7.98 -2.39 -0.02 1.32 16 37 H 0.15 1.68 8.01 -2.91 -0.02 1.66 16 38 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 39 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 40 H 0.23 1.85 8.06 -2.91 -0.02 1.83 16 41 H 0.14 3.67 8.06 -2.91 -0.02 3.64 16 42 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -76.83 364.04 0.83 -76.00 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: -1.62 Total: 30.93 kcal Atomic # 6 Polarization: -49.99 SS G_CDS: 4.77 Total: -45.22 kcal Atomic # 7 Polarization: -88.44 SS G_CDS: -4.13 Total: -92.57 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -0.22 Total: -14.58 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -76.83 0.83 -76.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084022254.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.679 kcal (2) G-P(sol) polarization free energy of solvation -76.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds