Wall clock time and date at job start Tue Mar 31 2020 14:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35761 * 117.00037 * 2 1 4 4 C 1.38949 * 119.91235 * 359.72129 * 3 2 1 5 5 C 1.37701 * 120.12076 * 180.28360 * 4 3 2 6 6 C 1.39780 * 119.94892 * 0.02562 * 5 4 3 7 7 C 1.47469 * 120.08643 * 180.02562 * 6 5 4 8 8 O 1.21511 * 119.99858 * 179.97438 * 7 6 5 9 9 O 1.34746 * 120.00120 * 359.97438 * 7 6 5 10 10 C 1.45202 * 116.99771 * 179.97438 * 9 7 6 11 11 C 1.53042 * 109.45955 * 270.02683 * 10 9 7 12 12 C 1.53197 * 109.31308 * 178.60328 * 11 10 9 13 13 N 1.46925 * 108.76494 * 54.65560 * 12 11 10 14 14 C 1.36930 * 120.63123 * 126.40262 * 13 12 11 15 15 H 1.08004 * 120.00049 * 332.61630 * 14 13 12 16 16 C 1.38815 * 120.00312 * 152.60763 * 14 13 12 17 17 N 1.31610 * 120.00397 * 159.34567 * 16 14 13 18 18 Si 1.86800 * 119.99567 * 339.35160 * 16 14 13 19 19 H 1.48505 * 109.47334 * 92.94254 * 18 16 14 20 20 H 1.48507 * 109.46978 * 212.93827 * 18 16 14 21 21 H 1.48493 * 109.47251 * 332.93758 * 18 16 14 22 22 C 1.46926 * 118.73897 * 306.38912 * 13 12 11 23 23 C 1.53040 * 109.45864 * 149.97505 * 10 9 7 24 24 C 1.39797 * 119.82522 * 359.97438 * 6 5 4 25 25 C 1.37874 * 119.88124 * 0.02562 * 24 6 5 26 26 F 1.35093 * 119.97556 * 180.02562 * 25 24 6 27 27 H 1.08994 * 109.46957 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47254 * 300.00577 * 1 2 3 29 29 H 1.09002 * 109.46630 * 60.00310 * 1 2 3 30 30 H 1.08002 * 119.93588 * 0.27601 * 4 3 2 31 31 H 1.08002 * 120.02550 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.46229 * 30.00279 * 10 9 7 33 33 H 1.09002 * 109.49991 * 298.56953 * 11 10 9 34 34 H 1.09000 * 109.49915 * 58.66882 * 11 10 9 35 35 H 1.09006 * 109.59663 * 294.87030 * 12 11 10 36 36 H 1.08994 * 109.70224 * 174.51047 * 12 11 10 37 37 H 0.97006 * 120.00395 * 180.02562 * 17 16 14 38 38 H 1.09001 * 109.58481 * 293.81878 * 22 13 12 39 39 H 1.09004 * 109.70469 * 173.46595 * 22 13 12 40 40 H 1.08994 * 109.49970 * 301.33603 * 23 10 9 41 41 H 1.09000 * 109.49659 * 61.43361 * 23 10 9 42 42 H 1.08004 * 120.05556 * 180.02562 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 1.2868 2.3738 -0.0059 5 6 1.9075 3.6030 -0.0118 6 6 3.3032 3.6799 -0.0124 7 6 3.9711 4.9947 -0.0182 8 8 5.1845 5.0597 -0.0183 9 8 3.2359 6.1239 -0.0234 10 6 3.9604 7.3822 -0.0283 11 6 4.2146 7.8298 1.4130 12 6 5.0094 9.1394 1.4041 13 7 4.2892 10.1238 0.5849 14 6 3.9733 11.3559 1.0920 15 1 3.8336 11.4826 2.1554 16 6 3.8329 12.4422 0.2392 17 7 3.1534 13.5003 0.6277 18 14 4.6082 12.4022 -1.4598 19 1 3.6177 11.8971 -2.4442 20 1 5.0321 13.7729 -1.8429 21 1 5.7912 11.5048 -1.4430 22 6 3.9146 9.7611 -0.7887 23 6 3.1325 8.4444 -0.7553 24 6 4.0642 2.5073 -0.0065 25 6 3.4353 1.2803 -0.0006 26 9 4.1689 0.1459 0.0056 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 0.2084 2.3144 -0.0059 31 1 1.3164 4.5069 -0.0167 32 1 4.9132 7.2506 -0.5411 33 1 3.2619 7.9856 1.9190 34 1 4.7843 7.0624 1.9372 35 1 5.9981 8.9642 0.9797 36 1 5.1102 9.5150 2.4223 37 1 3.0549 14.2593 0.0316 38 1 4.8140 9.6366 -1.3919 39 1 3.2917 10.5453 -1.2190 40 1 2.9317 8.1145 -1.7745 41 1 2.1900 8.5944 -0.2286 42 1 5.1429 2.5624 -0.0066 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120846124.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:28 Heat of formation + Delta-G solvation = -113.401056 kcal Electronic energy + Delta-G solvation = -26847.102046 eV Core-core repulsion = 22708.203957 eV Total energy + Delta-G solvation = -4138.898089 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.15674 -40.87147 -40.16220 -38.18241 -37.35323 -36.02121 -32.76493 -31.31063 -31.17886 -30.57989 -30.33252 -28.09231 -25.48421 -24.15415 -23.23053 -22.96030 -22.01207 -20.93835 -19.67404 -18.95083 -18.24066 -17.53252 -16.98831 -16.69031 -16.55208 -16.06698 -15.85323 -15.47468 -15.25370 -15.18442 -14.77003 -14.24448 -14.01944 -13.87616 -13.38201 -13.34401 -13.07624 -12.88249 -12.78324 -12.51935 -12.34761 -12.08857 -11.90375 -11.68628 -11.66316 -11.34296 -10.89983 -10.82629 -10.64074 -10.48528 -10.17032 -9.90295 -9.78731 -9.50765 -9.45394 -8.77027 -8.69112 -7.06655 -5.99071 -3.35886 0.24628 0.64633 2.27380 2.49187 2.62465 3.24480 3.27970 3.46194 3.48764 3.72727 4.15797 4.37979 4.44365 4.48866 4.61475 4.64408 4.65751 4.86828 4.94332 5.00270 5.08897 5.15572 5.27707 5.34081 5.45036 5.52101 5.60361 5.72608 5.74827 5.94479 6.02175 6.05440 6.10755 6.20778 6.29715 6.50287 6.54753 6.58517 6.62467 6.65775 6.88385 7.75417 7.89994 8.28319 8.87831 9.66576 10.02887 11.16661 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.029151 B = 0.002455 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.286342 B =11402.549501 C =11751.536336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.305 6.305 3 C 0.128 3.872 4 C -0.197 4.197 5 C -0.026 4.026 6 C -0.132 4.132 7 C 0.509 3.491 8 O -0.505 6.505 9 O -0.349 6.349 10 C 0.099 3.901 11 C -0.148 4.148 12 C 0.152 3.848 13 N -0.606 5.606 14 C -0.262 4.262 15 H 0.087 0.913 16 C 0.024 3.976 17 N -0.906 5.906 18 Si 0.880 3.120 19 H -0.287 1.287 20 H -0.302 1.302 21 H -0.270 1.270 22 C 0.128 3.872 23 C -0.129 4.129 24 C -0.053 4.053 25 C 0.057 3.943 26 F -0.127 7.127 27 H 0.106 0.894 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.148 0.852 31 H 0.152 0.848 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.027 0.973 36 H 0.071 0.929 37 H 0.263 0.737 38 H 0.029 0.971 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.078 0.922 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.101 -26.377 -2.330 27.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.218 6.218 3 C 0.081 3.919 4 C -0.216 4.216 5 C -0.045 4.045 6 C -0.134 4.134 7 C 0.353 3.647 8 O -0.394 6.394 9 O -0.266 6.266 10 C 0.045 3.955 11 C -0.188 4.188 12 C 0.026 3.974 13 N -0.329 5.329 14 C -0.390 4.390 15 H 0.105 0.895 16 C -0.175 4.175 17 N -0.549 5.549 18 Si 0.710 3.290 19 H -0.215 1.215 20 H -0.230 1.230 21 H -0.195 1.195 22 C 0.002 3.998 23 C -0.168 4.168 24 C -0.072 4.072 25 C 0.037 3.963 26 F -0.106 7.106 27 H 0.124 0.876 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.165 0.835 31 H 0.170 0.830 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.045 0.955 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.047 0.953 39 H 0.100 0.900 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.686 -26.354 -2.338 27.062 hybrid contribution 0.344 0.017 -0.995 1.053 sum -5.342 -26.337 -3.333 27.079 Atomic orbital electron populations 1.23229 0.77230 1.04731 1.02016 1.86121 1.22340 1.25664 1.87634 1.19346 0.90848 0.85858 0.95842 1.21161 1.00865 0.90950 1.08607 1.21411 0.93206 0.98360 0.91481 1.18874 0.93551 0.90426 1.10519 1.20782 0.85668 0.85111 0.73097 1.90845 1.14798 1.87953 1.45804 1.86580 1.41696 1.15134 1.83208 1.22927 0.95736 0.78419 0.98380 1.22475 1.02239 0.99310 0.94748 1.20888 0.92678 0.87414 0.96456 1.44429 1.64390 1.13605 1.10513 1.18924 1.42272 0.83194 0.94602 0.89502 1.25285 0.98913 0.95366 0.97949 1.69829 1.40438 1.07306 1.37311 0.86994 0.80645 0.76093 0.85249 1.21505 1.22980 1.19466 1.21378 0.96618 0.94014 0.87744 1.22247 1.00410 0.94770 0.99407 1.21081 1.01947 0.88756 0.95372 1.16624 0.85865 0.82872 1.10898 1.91531 1.76469 1.48156 1.94418 0.87607 0.91923 0.91941 0.83454 0.83013 0.90026 0.90792 0.92102 0.95508 0.91062 0.92685 0.95337 0.90006 0.91828 0.90366 0.82402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 101.05 0.99 1.08 16 2 O -0.31 -2.60 10.35 -18.99 -0.20 -2.79 16 3 C 0.13 1.18 6.70 -38.97 -0.26 0.91 16 4 C -0.20 -1.47 9.01 -39.51 -0.36 -1.83 16 5 C -0.03 -0.23 9.60 -39.20 -0.38 -0.61 16 6 C -0.13 -1.50 5.87 -104.98 -0.62 -2.11 16 7 C 0.51 7.30 7.86 34.49 0.27 7.57 16 8 O -0.50 -8.48 15.60 -19.27 -0.30 -8.78 16 9 O -0.35 -5.20 9.12 -40.62 -0.37 -5.57 16 10 C 0.10 1.66 2.42 -26.69 -0.06 1.60 16 11 C -0.15 -2.54 5.72 -26.61 -0.15 -2.69 16 12 C 0.15 3.00 6.52 -3.71 -0.02 2.97 16 13 N -0.61 -14.21 2.77 -172.32 -0.48 -14.69 16 14 C -0.26 -7.20 10.03 -15.06 -0.15 -7.35 16 15 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 16 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 17 N -0.91 -27.39 13.97 55.49 0.78 -26.61 16 18 Si 0.88 21.97 24.34 -169.99 -4.14 17.84 16 19 H -0.29 -6.85 6.62 56.52 0.37 -6.48 16 20 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 21 H -0.27 -6.65 6.63 56.52 0.37 -6.27 16 22 C 0.13 2.74 4.20 -3.71 -0.02 2.73 16 23 C -0.13 -2.26 5.74 -26.61 -0.15 -2.41 16 24 C -0.05 -0.57 9.56 -39.13 -0.37 -0.94 16 25 C 0.06 0.60 7.30 -39.37 -0.29 0.32 16 26 F -0.13 -1.47 17.10 2.25 0.04 -1.43 16 27 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.18 7.66 -51.93 -0.40 -0.21 16 29 H 0.06 0.18 7.64 -51.93 -0.40 -0.22 16 30 H 0.15 0.66 6.27 -52.49 -0.33 0.33 16 31 H 0.15 1.19 7.60 -52.49 -0.40 0.80 16 32 H 0.08 1.43 7.16 -51.93 -0.37 1.06 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 1.38 7.93 -51.93 -0.41 0.97 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.03 0.60 7.08 -51.93 -0.37 0.24 16 39 H 0.08 1.89 4.50 -51.93 -0.23 1.66 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.16 1.65 7.64 -52.48 -0.40 1.25 16 LS Contribution 347.90 15.07 5.24 5.24 Total: -1.00 -32.39 347.90 -6.55 -38.93 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -5.46 Total: -1.98 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -1.66 Total: -0.17 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 0.30 Total: -41.30 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -0.87 Total: -17.14 kcal Atomic # 9 Polarization: -1.47 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.14 Total: 17.84 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.39 -6.55 -38.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120846124.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.467 kcal (2) G-P(sol) polarization free energy of solvation -32.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds