Wall clock time and date at job start Tue Mar 31 2020 13:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46499 * 120.00301 * 2 1 4 4 C 1.53001 * 109.47022 * 270.00168 * 3 2 1 5 5 C 1.53001 * 109.47261 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47261 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.46856 * 180.02562 * 6 5 4 8 8 O 1.42898 * 109.46929 * 179.97438 * 7 6 5 9 9 C 1.34775 * 119.99768 * 180.02562 * 2 1 3 10 10 O 1.21612 * 120.00023 * 174.65651 * 9 2 1 11 11 C 1.47427 * 120.00204 * 354.66125 * 9 2 1 12 12 C 1.39685 * 120.21407 * 309.08213 * 11 9 2 13 13 C 1.37803 * 119.93780 * 179.97438 * 12 11 9 14 14 C 1.38653 * 120.38442 * 359.97438 * 13 12 11 15 15 C 1.37911 * 120.43967 * 359.97438 * 14 13 12 16 16 C 1.39119 * 120.05009 * 359.97438 * 15 14 13 17 17 S 1.76196 * 120.19082 * 179.97438 * 16 15 14 18 18 C 1.76193 * 99.99976 * 351.74250 * 17 16 15 19 19 H 1.08000 * 120.00484 * 5.06445 * 18 17 16 20 20 C 1.38806 * 120.00001 * 185.06497 * 18 17 16 21 21 N 1.31546 * 119.99954 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00014 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47037 * 60.00101 * 22 20 18 24 24 H 1.48500 * 109.47196 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47201 * 299.99860 * 22 20 18 26 26 H 1.08997 * 109.46895 * 274.36665 * 1 2 3 27 27 H 1.09006 * 109.47036 * 34.36597 * 1 2 3 28 28 H 1.09003 * 109.47120 * 154.36995 * 1 2 3 29 29 H 1.09000 * 109.46634 * 29.99701 * 3 2 1 30 30 H 1.08997 * 109.47213 * 150.00002 * 3 2 1 31 31 H 1.08998 * 109.46978 * 300.00064 * 4 3 2 32 32 H 1.09006 * 109.47121 * 60.00063 * 4 3 2 33 33 H 1.08998 * 109.46866 * 300.00570 * 5 4 3 34 34 H 1.08997 * 109.46787 * 59.99948 * 5 4 3 35 35 H 1.09005 * 109.46820 * 300.00088 * 6 5 4 36 36 H 1.08997 * 109.47262 * 60.00239 * 6 5 4 37 37 H 1.09000 * 109.46728 * 299.99489 * 7 6 5 38 38 H 1.08997 * 109.47285 * 59.99891 * 7 6 5 39 39 H 0.96700 * 114.00010 * 179.97438 * 8 7 6 40 40 H 1.08001 * 120.02558 * 0.25943 * 12 11 9 41 41 H 1.07999 * 119.80969 * 179.97438 * 13 12 11 42 42 H 1.07998 * 119.78414 * 179.97438 * 14 13 12 43 43 H 1.07993 * 119.97839 * 179.97438 * 15 14 13 44 44 H 0.97006 * 120.00065 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 6 3.2171 3.0357 -1.4426 6 6 3.4726 3.4770 -2.8851 7 6 4.2377 4.8020 -2.8850 8 8 4.4769 5.2139 -4.2323 9 6 2.1388 -1.1672 -0.0005 10 8 3.3510 -1.1695 -0.0986 11 6 1.4065 -2.4412 0.1177 12 6 0.4752 -2.6242 1.1426 13 6 -0.2065 -3.8172 1.2475 14 6 0.0256 -4.8397 0.3402 15 6 0.9408 -4.6756 -0.6784 16 6 1.6385 -3.4783 -0.8019 17 16 2.8090 -3.2649 -2.1014 18 6 2.8597 -4.9062 -2.7402 19 1 2.1902 -5.6585 -2.3500 20 6 3.7601 -5.2325 -3.7449 21 7 4.5753 -4.3161 -4.2205 22 14 3.8143 -6.9728 -4.4216 23 1 2.4911 -7.3208 -4.9988 24 1 4.8535 -7.0607 -5.4787 25 1 4.1410 -7.9201 -3.3257 26 1 -0.3633 0.0782 1.0247 27 1 -0.3633 0.8483 -0.5801 28 1 -0.3633 -0.9266 -0.4445 29 1 1.6084 2.0283 0.5138 30 1 3.1500 1.1383 0.5138 31 1 3.0416 0.9507 -1.9563 32 1 1.5001 1.8407 -1.9563 33 1 2.6277 3.7951 -0.9288 34 1 4.1694 2.9057 -0.9287 35 1 4.0622 2.7173 -3.3984 36 1 2.5204 3.6069 -3.3994 37 1 3.6484 5.5617 -2.3716 38 1 5.1899 4.6717 -2.3708 39 1 4.9586 6.0489 -4.3087 40 1 0.2863 -1.8297 1.8494 41 1 -0.9258 -3.9566 2.0409 42 1 -0.5138 -5.7708 0.4317 43 1 1.1161 -5.4771 -1.3806 44 1 5.2048 -4.5442 -4.9225 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227099458.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:46 Heat of formation + Delta-G solvation = -72.162799 kcal Electronic energy + Delta-G solvation = -24537.375648 eV Core-core repulsion = 20966.478960 eV Total energy + Delta-G solvation = -3570.896687 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.76870 -37.72991 -37.34657 -35.80949 -34.35337 -32.76887 -31.21344 -30.36574 -29.75569 -26.77817 -25.88020 -25.49979 -23.04487 -22.01647 -21.66034 -21.10519 -19.32115 -17.90095 -17.47359 -16.92280 -16.17422 -15.97007 -15.83358 -15.25598 -15.08803 -14.59535 -14.36956 -14.21968 -13.89700 -13.51087 -13.03556 -12.95994 -12.79856 -12.63756 -12.58253 -12.27427 -11.98599 -11.78161 -11.65659 -11.29367 -11.20800 -11.17708 -11.16323 -11.02932 -10.97711 -10.50461 -10.33800 -10.13957 -9.81374 -9.57230 -9.40238 -8.77081 -8.51884 -8.35967 -8.27930 -6.55092 -6.48071 -4.19311 1.64609 1.99277 3.07963 3.14154 3.17903 3.18961 3.35605 3.42283 4.02162 4.03590 4.34971 4.79040 4.92240 4.93820 4.95102 5.06156 5.09688 5.19903 5.21189 5.29108 5.38362 5.41478 5.50049 5.54511 5.59488 5.72422 5.77202 5.79599 5.85482 5.87584 5.99425 6.12324 6.16184 6.29673 6.35669 6.43615 6.56874 6.81057 6.88272 7.00727 7.11567 7.42795 7.42953 7.57032 7.70899 8.14329 8.67807 8.98111 10.57427 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.009476 B = 0.003875 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2954.027825 B = 7223.413616 C = 9837.310755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.620 5.620 3 C 0.121 3.879 4 C -0.137 4.137 5 C -0.111 4.111 6 C -0.122 4.122 7 C 0.075 3.925 8 O -0.576 6.576 9 C 0.567 3.433 10 O -0.512 6.512 11 C -0.161 4.161 12 C -0.066 4.066 13 C -0.180 4.180 14 C -0.081 4.081 15 C -0.152 4.152 16 C -0.049 4.049 17 S 0.103 5.897 18 C -0.569 4.569 19 H 0.093 0.907 20 C 0.081 3.919 21 N -0.859 5.859 22 Si 0.923 3.077 23 H -0.270 1.270 24 H -0.280 1.280 25 H -0.269 1.269 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.043 0.957 38 H 0.045 0.955 39 H 0.377 0.623 40 H 0.114 0.886 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.139 0.861 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.752 13.773 7.641 17.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.355 5.355 3 C -0.002 4.002 4 C -0.176 4.176 5 C -0.149 4.149 6 C -0.160 4.160 7 C -0.002 4.002 8 O -0.381 6.381 9 C 0.355 3.645 10 O -0.386 6.386 11 C -0.175 4.175 12 C -0.086 4.086 13 C -0.205 4.205 14 C -0.102 4.102 15 C -0.178 4.178 16 C -0.167 4.167 17 S 0.365 5.635 18 C -0.716 4.716 19 H 0.111 0.889 20 C -0.130 4.130 21 N -0.491 5.491 22 Si 0.748 3.252 23 H -0.195 1.195 24 H -0.205 1.205 25 H -0.194 1.194 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.223 0.777 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.156 0.844 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.384 14.236 6.657 16.963 hybrid contribution -0.488 -1.621 0.183 1.702 sum -6.872 12.615 6.841 15.911 Atomic orbital electron populations 1.21796 0.79814 1.03395 1.01111 1.47789 1.06785 1.05652 1.75299 1.21370 0.97534 0.84476 0.96788 1.21958 1.00826 0.97184 0.97608 1.21393 1.00740 0.96924 0.95829 1.21536 1.00923 0.96013 0.97500 1.22235 0.98612 0.96397 0.82972 1.86512 1.79902 1.44333 1.27339 1.18394 0.87168 0.83363 0.75544 1.90812 1.13579 1.86787 1.47446 1.19153 1.03359 0.94653 1.00362 1.20899 0.94135 0.97256 0.96347 1.20657 1.03667 0.94550 1.01591 1.21074 0.96806 0.97974 0.94321 1.21411 0.98066 0.97977 1.00322 1.22886 0.99761 0.94744 0.99322 1.83970 1.41265 1.14423 1.23884 1.23501 1.25666 0.96937 1.25455 0.88898 1.25106 0.93682 0.99027 0.95197 1.69964 1.19484 1.33855 1.25836 0.86134 0.78398 0.81925 0.78725 1.19465 1.20515 1.19428 0.93071 0.91794 0.90259 0.91123 0.90087 0.90507 0.91905 0.92050 0.91546 0.90796 0.91314 0.93909 0.93656 0.77675 0.86821 0.86980 0.86960 0.84404 0.91471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.96 9.17 59.85 0.55 1.51 16 2 N -0.62 -9.39 2.87 -182.85 -0.53 -9.92 16 3 C 0.12 1.55 5.39 -4.04 -0.02 1.53 16 4 C -0.14 -1.77 5.54 -26.73 -0.15 -1.91 16 5 C -0.11 -1.14 5.21 -26.73 -0.14 -1.28 16 6 C -0.12 -1.37 5.58 -26.73 -0.15 -1.52 16 7 C 0.08 0.72 7.05 37.16 0.26 0.98 16 8 O -0.58 -6.10 13.66 -35.23 -0.48 -6.58 16 9 C 0.57 11.22 6.60 -12.52 -0.08 11.14 16 10 O -0.51 -12.08 15.48 5.27 0.08 -12.00 16 11 C -0.16 -3.21 4.61 -104.75 -0.48 -3.69 16 12 C -0.07 -1.07 8.01 -39.20 -0.31 -1.38 16 13 C -0.18 -2.76 10.02 -39.59 -0.40 -3.15 16 14 C -0.08 -1.36 10.02 -39.55 -0.40 -1.76 16 15 C -0.15 -3.16 9.25 -39.37 -0.36 -3.52 16 16 C -0.05 -1.11 6.13 -38.39 -0.24 -1.34 16 17 S 0.10 2.77 19.79 -107.50 -2.13 0.64 16 18 C -0.57 -15.70 9.08 30.94 0.28 -15.42 16 19 H 0.09 2.42 4.86 -52.49 -0.26 2.16 16 20 C 0.08 2.22 5.49 -17.46 -0.10 2.13 16 21 N -0.86 -24.87 13.22 55.49 0.73 -24.13 16 22 Si 0.92 20.72 29.55 -169.99 -5.02 15.69 16 23 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 H 0.05 0.49 7.61 -51.93 -0.40 0.09 16 27 H 0.06 0.61 8.11 -51.93 -0.42 0.19 16 28 H 0.08 1.04 6.33 -51.93 -0.33 0.71 16 29 H 0.07 0.68 8.07 -51.93 -0.42 0.26 16 30 H 0.08 1.15 7.50 -51.93 -0.39 0.76 16 31 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.38 2.09 9.12 45.56 0.42 2.51 16 40 H 0.11 1.51 7.14 -52.49 -0.37 1.14 16 41 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 42 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 43 H 0.14 2.97 4.99 -52.49 -0.26 2.71 16 44 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 376.33 15.07 5.67 5.67 Total: -1.00 -33.89 376.33 -9.20 -43.08 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -5.79 Total: 5.23 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: -1.74 Total: -17.70 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 0.21 Total: -34.05 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.40 Total: -18.58 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -2.13 Total: 0.64 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.89 -9.20 -43.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227099458.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.078 kcal (2) G-P(sol) polarization free energy of solvation -33.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds