Wall clock time and date at job start Tue Mar 31 2020 13:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46506 * 120.00346 * 2 1 4 4 C 1.52995 * 109.46748 * 90.00431 * 3 2 1 5 5 C 1.53001 * 109.47181 * 180.02562 * 4 3 2 6 6 O 1.42902 * 109.47386 * 180.02562 * 5 4 3 7 7 C 1.35898 * 116.99694 * 180.02562 * 6 5 4 8 8 C 1.38735 * 120.05254 * 179.97438 * 7 6 5 9 9 C 1.38144 * 119.94607 * 179.97438 * 8 7 6 10 10 C 1.38266 * 120.05233 * 0.02562 * 9 8 7 11 11 C 1.38269 * 120.11595 * 359.95530 * 10 9 8 12 12 C 1.38142 * 120.04935 * 0.04230 * 11 10 9 13 13 C 1.34778 * 120.00254 * 180.02562 * 2 1 3 14 14 O 1.21278 * 120.00482 * 179.97438 * 13 2 1 15 15 C 1.50703 * 119.99433 * 359.97438 * 13 2 1 16 16 S 1.81404 * 109.47114 * 180.02562 * 15 13 2 17 17 C 1.81394 * 103.00204 * 179.97438 * 16 15 13 18 18 C 1.50693 * 109.47288 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00156 * 0.02562 * 18 17 16 20 20 C 1.37880 * 120.00210 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00027 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00008 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47047 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47123 * 119.99981 * 22 20 18 25 25 H 1.48506 * 109.46703 * 240.00007 * 22 20 18 26 26 H 1.08994 * 109.47567 * 89.99102 * 1 2 3 27 27 H 1.08996 * 109.47214 * 209.99887 * 1 2 3 28 28 H 1.09006 * 109.46756 * 329.99350 * 1 2 3 29 29 H 1.08999 * 109.46978 * 330.00445 * 3 2 1 30 30 H 1.08993 * 109.47175 * 210.00363 * 3 2 1 31 31 H 1.08999 * 109.47370 * 60.00254 * 4 3 2 32 32 H 1.09006 * 109.47017 * 300.00096 * 4 3 2 33 33 H 1.08999 * 109.46920 * 59.99785 * 5 4 3 34 34 H 1.08998 * 109.47220 * 300.00155 * 5 4 3 35 35 H 1.08002 * 120.02704 * 359.70561 * 8 7 6 36 36 H 1.08001 * 119.97447 * 179.97438 * 9 8 7 37 37 H 1.08000 * 119.94089 * 179.97438 * 10 9 8 38 38 H 1.07992 * 119.97577 * 180.02562 * 11 10 9 39 39 H 1.08005 * 120.02748 * 179.97438 * 12 11 10 40 40 H 1.09008 * 109.47081 * 299.99989 * 15 13 2 41 41 H 1.08994 * 109.47306 * 60.00240 * 15 13 2 42 42 H 1.09002 * 109.47040 * 300.00025 * 17 16 15 43 43 H 1.09002 * 109.47138 * 59.99507 * 17 16 15 44 44 H 0.96996 * 120.00109 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4527 1.7102 1.4425 5 6 3.2172 3.0355 1.4426 6 8 3.4560 3.4477 2.7899 7 6 4.1288 4.6149 2.9679 8 6 4.3947 5.0751 4.2494 9 6 5.0792 6.2617 4.4279 10 6 5.4990 6.9907 3.3305 11 6 5.2356 6.5340 2.0523 12 6 4.5514 5.3480 1.8687 13 6 2.1389 -1.1672 -0.0005 14 8 3.3517 -1.1672 -0.0010 15 6 1.3854 -2.4723 -0.0005 16 16 2.5641 -3.8511 -0.0005 17 6 1.4858 -5.3098 0.0003 18 6 2.3297 -6.5583 -0.0003 19 1 3.4070 -6.4820 -0.0006 20 6 1.7265 -7.7982 -0.0004 21 7 0.4147 -7.8912 -0.0005 22 14 2.7726 -9.3458 -0.0003 23 1 4.2097 -8.9718 -0.0009 24 1 2.4698 -10.1479 1.2120 25 1 2.4699 -10.1478 -1.2130 26 1 -0.3634 0.0002 -1.0276 27 1 -0.3633 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5140 29 1 1.6085 2.0284 -0.5138 30 1 3.1499 1.1384 -0.5139 31 1 3.0418 0.9506 1.9562 32 1 1.5002 1.8406 1.9564 33 1 2.6278 3.7950 0.9290 34 1 4.1696 2.9057 0.9286 35 1 4.0628 4.5084 5.1069 36 1 5.2861 6.6206 5.4253 37 1 6.0337 7.9183 3.4721 38 1 5.5649 7.1050 1.1968 39 1 4.3456 4.9919 0.8700 40 1 0.7590 -2.5302 0.8898 41 1 0.7584 -2.5298 -0.8902 42 1 0.8570 -5.2963 0.8905 43 1 0.8563 -5.2968 -0.8895 44 1 -0.0097 -8.7634 -0.0002 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413016944.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:06 Heat of formation + Delta-G solvation = -73.353499 kcal Electronic energy + Delta-G solvation = -23131.766073 eV Core-core repulsion = 19560.817753 eV Total energy + Delta-G solvation = -3570.948320 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.16594 -40.86219 -38.48010 -36.99383 -35.29134 -34.09067 -31.95150 -31.22468 -30.66325 -30.34856 -28.05715 -26.49380 -25.19920 -23.96659 -23.18097 -22.26870 -20.48963 -19.20625 -18.68761 -18.25092 -17.66235 -17.19134 -17.11404 -16.94868 -16.67291 -16.54861 -16.04915 -15.36745 -15.09582 -14.86554 -14.63749 -14.48953 -14.35676 -14.27894 -14.17030 -14.04265 -13.55977 -13.47352 -13.29011 -13.07688 -12.74868 -12.63225 -12.56454 -12.46268 -12.28682 -12.02489 -11.71483 -11.62052 -11.58279 -11.03158 -10.74928 -10.63264 -9.95885 -9.80596 -9.18413 -8.50281 -8.34122 -6.46188 0.38719 0.48522 0.74578 1.39674 1.40224 1.44501 1.55056 1.87896 1.99188 2.30759 2.37153 2.84419 3.00707 3.47252 3.81228 3.83239 3.94277 4.01447 4.05217 4.08995 4.20930 4.24821 4.30119 4.31210 4.37538 4.48025 4.52662 4.58221 4.69874 4.77104 4.92489 4.93851 4.94899 4.95542 5.08277 5.08809 5.36303 5.47913 5.48900 5.57372 5.60092 5.86773 5.89466 6.17556 6.44544 6.60546 7.02719 7.21522 8.78103 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.025807 B = 0.001734 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.737473 B =16146.962247 C =16704.909689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.609 5.609 3 C 0.122 3.878 4 C -0.127 4.127 5 C 0.065 3.935 6 O -0.337 6.337 7 C 0.107 3.893 8 C -0.175 4.175 9 C -0.085 4.085 10 C -0.165 4.165 11 C -0.087 4.087 12 C -0.219 4.219 13 C 0.530 3.470 14 O -0.560 6.560 15 C -0.112 4.112 16 S -0.278 6.278 17 C 0.085 3.915 18 C -0.538 4.538 19 H 0.057 0.943 20 C 0.018 3.982 21 N -0.922 5.922 22 Si 0.975 3.025 23 H -0.270 1.270 24 H -0.271 1.271 25 H -0.270 1.270 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.101 0.899 29 H 0.122 0.878 30 H 0.070 0.930 31 H 0.044 0.956 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.129 0.871 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.140 0.860 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.021 0.979 43 H 0.022 0.978 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.249 32.198 3.018 32.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.342 5.342 3 C -0.001 4.001 4 C -0.166 4.166 5 C -0.010 4.010 6 O -0.251 6.251 7 C 0.062 3.938 8 C -0.194 4.194 9 C -0.103 4.103 10 C -0.183 4.183 11 C -0.105 4.105 12 C -0.238 4.238 13 C 0.317 3.683 14 O -0.439 6.439 15 C -0.262 4.262 16 S -0.053 6.053 17 C -0.062 4.062 18 C -0.577 4.577 19 H 0.075 0.925 20 C -0.183 4.183 21 N -0.560 5.560 22 Si 0.798 3.202 23 H -0.194 1.194 24 H -0.196 1.196 25 H -0.196 1.196 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.120 0.880 29 H 0.140 0.860 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.147 0.853 36 H 0.168 0.832 37 H 0.165 0.835 38 H 0.165 0.835 39 H 0.158 0.842 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.039 0.961 43 H 0.040 0.960 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.726 32.006 3.140 32.206 hybrid contribution -1.035 -1.230 -0.053 1.609 sum 0.691 30.776 3.087 30.938 Atomic orbital electron populations 1.22184 0.76484 1.05043 1.03814 1.47810 1.08708 1.04585 1.73118 1.21400 0.98419 0.84781 0.95471 1.21799 1.01245 0.95196 0.98332 1.22761 1.00460 0.96569 0.81194 1.86030 1.71509 1.36914 1.30668 1.19340 0.93437 0.85894 0.95121 1.20728 1.04613 0.99146 0.94911 1.21305 0.95405 0.92950 1.00613 1.21452 1.02782 1.01769 0.92336 1.21333 0.95800 0.94795 0.98534 1.21530 1.05423 0.98421 0.98419 1.19963 0.87262 0.85417 0.75653 1.90709 1.15462 1.87390 1.50292 1.23418 1.01367 0.93434 1.08013 1.87280 1.18581 1.01290 1.98100 1.20836 0.95312 0.91620 0.98466 1.20984 0.93234 0.90495 1.52964 0.92485 1.25844 0.96473 1.02230 0.93756 1.70037 1.09943 1.26016 1.50039 0.85250 0.78608 0.77964 0.78345 1.19410 1.19623 1.19553 0.90456 0.90616 0.88016 0.85952 0.91165 0.93722 0.89579 0.89170 0.91807 0.85331 0.83208 0.83548 0.83509 0.84178 0.86070 0.85880 0.96119 0.96002 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.82 10.24 127.77 1.31 2.13 16 2 N -0.61 -12.78 2.87 -846.76 -2.43 -15.22 16 3 C 0.12 2.06 5.41 86.38 0.47 2.52 16 4 C -0.13 -2.31 5.91 30.59 0.18 -2.13 16 5 C 0.07 1.06 4.74 71.98 0.34 1.40 16 6 O -0.34 -7.40 10.14 -92.40 -0.94 -8.33 16 7 C 0.11 2.15 6.69 22.51 0.15 2.30 16 8 C -0.18 -3.21 9.99 22.37 0.22 -2.99 16 9 C -0.08 -1.17 10.04 22.25 0.22 -0.95 16 10 C -0.17 -2.03 10.04 22.28 0.22 -1.81 16 11 C -0.09 -1.13 10.04 22.25 0.22 -0.91 16 12 C -0.22 -3.53 9.04 22.36 0.20 -3.32 16 13 C 0.53 16.84 7.69 87.66 0.67 17.51 16 14 O -0.56 -22.94 15.44 -3.02 -0.05 -22.98 16 15 C -0.11 -3.68 4.98 71.24 0.35 -3.32 16 16 S -0.28 -13.08 20.79 -56.49 -1.17 -14.26 16 17 C 0.09 4.56 5.70 71.23 0.41 4.97 16 18 C -0.54 -31.50 9.13 25.60 0.23 -31.27 16 19 H 0.06 3.40 7.71 -2.91 -0.02 3.37 16 20 C 0.02 1.02 5.46 84.66 0.46 1.48 16 21 N -0.92 -53.81 13.29 21.45 0.28 -53.52 16 22 Si 0.97 44.37 29.54 68.60 2.03 46.40 16 23 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 26 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.08 0.99 6.44 -2.39 -0.02 0.98 16 28 H 0.10 0.72 8.07 -2.38 -0.02 0.70 16 29 H 0.12 1.06 8.07 -2.39 -0.02 1.04 16 30 H 0.07 1.49 7.42 -2.39 -0.02 1.47 16 31 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.09 0.95 7.66 -2.39 -0.02 0.93 16 34 H 0.06 1.04 7.66 -2.39 -0.02 1.02 16 35 H 0.13 2.22 8.06 -2.91 -0.02 2.20 16 36 H 0.15 1.28 8.06 -2.91 -0.02 1.25 16 37 H 0.15 1.03 8.06 -2.91 -0.02 1.00 16 38 H 0.15 1.15 8.06 -2.91 -0.02 1.12 16 39 H 0.14 1.75 6.30 -2.91 -0.02 1.73 16 40 H 0.12 3.51 7.40 -2.39 -0.02 3.49 16 41 H 0.12 3.51 8.11 -2.39 -0.02 3.49 16 42 H 0.02 1.13 8.14 -2.39 -0.02 1.12 16 43 H 0.02 1.19 8.14 -2.39 -0.02 1.18 16 44 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -77.09 384.58 4.37 -72.72 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 0.97 Total: 9.56 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: 5.67 Total: -14.37 kcal Atomic # 7 Polarization: -66.59 SS G_CDS: -2.15 Total: -68.74 kcal Atomic # 8 Polarization: -30.33 SS G_CDS: -0.98 Total: -31.32 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: -13.08 SS G_CDS: -1.17 Total: -14.26 kcal Total: -77.09 4.37 -72.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413016944.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.634 kcal (2) G-P(sol) polarization free energy of solvation -77.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds