Wall clock time and date at job start Tue Mar 31 2020 13:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 S 1.81399 * 109.47145 * 2 1 4 4 C 1.76211 * 102.99861 * 180.02562 * 3 2 1 5 5 C 1.38971 * 120.07804 * 359.72594 * 4 3 2 6 6 C 1.38085 * 119.91157 * 179.72415 * 5 4 3 7 7 C 1.38302 * 120.08496 * 0.52718 * 6 5 4 8 8 C 1.50702 * 119.92128 * 179.74428 * 7 6 5 9 9 C 1.50699 * 109.47072 * 270.02124 * 8 7 6 10 10 O 1.21291 * 120.00519 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99914 * 179.97438 * 9 8 7 12 12 C 1.37104 * 119.99555 * 0.02562 * 11 9 8 13 13 H 1.07993 * 120.00133 * 325.64451 * 12 11 9 14 14 C 1.38955 * 119.99559 * 145.65018 * 12 11 9 15 15 N 1.31411 * 119.99919 * 338.15562 * 14 12 11 16 16 Si 1.86796 * 120.00125 * 158.15764 * 14 12 11 17 17 H 1.48500 * 109.47341 * 89.99421 * 16 14 12 18 18 H 1.48495 * 109.47496 * 209.99749 * 16 14 12 19 19 H 1.48506 * 109.46995 * 330.00095 * 16 14 12 20 20 C 1.46497 * 120.00233 * 179.97438 * 11 9 8 21 21 C 1.53001 * 109.46712 * 84.55439 * 20 11 9 22 22 O 1.42908 * 109.47236 * 65.00401 * 21 20 11 23 23 C 1.42896 * 114.00025 * 179.97438 * 22 21 20 24 24 C 1.38301 * 120.16073 * 359.76781 * 7 6 5 25 25 C 1.38083 * 120.07806 * 359.95484 * 24 7 6 26 26 H 1.08999 * 109.46814 * 60.00313 * 1 2 3 27 27 H 1.08991 * 109.47019 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46943 * 300.00444 * 1 2 3 29 29 H 1.09000 * 109.47684 * 239.99580 * 2 1 3 30 30 H 1.09007 * 109.47090 * 119.99872 * 2 1 3 31 31 H 1.07990 * 120.04232 * 359.97438 * 5 4 3 32 32 H 1.08006 * 119.95299 * 180.27186 * 6 5 4 33 33 H 1.09006 * 109.46757 * 30.02184 * 8 7 6 34 34 H 1.08997 * 109.46907 * 150.01734 * 8 7 6 35 35 H 0.97006 * 119.99775 * 180.02562 * 15 14 12 36 36 H 1.08992 * 109.47277 * 204.55485 * 20 11 9 37 37 H 1.08998 * 109.46897 * 324.55974 * 20 11 9 38 38 H 1.09005 * 109.47060 * 185.00208 * 21 20 11 39 39 H 1.08991 * 109.47492 * 304.99984 * 21 20 11 40 40 H 1.09004 * 109.47029 * 59.99875 * 23 22 21 41 41 H 1.08999 * 109.47042 * 179.97438 * 23 22 21 42 42 H 1.08992 * 109.47284 * 300.00065 * 23 22 21 43 43 H 1.08000 * 119.96202 * 179.97438 * 24 7 6 44 44 H 1.07998 * 120.03746 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.8855 1.5116 -0.0008 5 6 4.4420 0.2382 0.0046 6 6 5.8145 0.0865 -0.0018 7 6 6.6351 1.1998 -0.0025 8 6 8.1325 1.0299 -0.0036 9 6 8.6326 0.9728 1.4168 10 8 7.8502 1.0609 2.3394 11 7 9.9494 0.8228 1.6621 12 6 10.8338 0.7228 0.6192 13 1 10.5390 0.2256 -0.2930 14 6 12.1096 1.2610 0.7362 15 7 12.3448 2.2087 1.6157 16 14 13.4902 0.6375 -0.3567 17 1 13.5351 1.4411 -1.6047 18 1 14.7845 0.7637 0.3601 19 1 13.2485 -0.7883 -0.6947 20 6 10.4358 0.7679 3.0428 21 6 10.3143 -0.6634 3.5697 22 8 11.1853 -1.5197 2.8278 23 6 11.1487 -2.8865 3.2428 24 6 6.0848 2.4686 -0.0016 25 6 4.7132 2.6280 -0.0010 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 3.8019 -0.6315 0.0096 32 1 6.2477 -0.9029 -0.0021 33 1 8.3928 0.1047 -0.5180 34 1 8.5934 1.8734 -0.5176 35 1 13.2353 2.5846 1.6971 36 1 11.4800 1.0787 3.0729 37 1 9.8398 1.4358 3.6648 38 1 10.5921 -0.6875 4.6235 39 1 9.2857 -1.0059 3.4572 40 1 10.1373 -3.2754 3.1238 41 1 11.8364 -3.4705 2.6311 42 1 11.4440 -2.9564 4.2896 43 1 6.7286 3.3357 -0.0017 44 1 4.2842 3.6192 0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457203398.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:07 Heat of formation + Delta-G solvation = -57.040227 kcal Electronic energy + Delta-G solvation = -24872.584791 eV Core-core repulsion = 21302.343867 eV Total energy + Delta-G solvation = -3570.240924 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.28370 -38.21133 -36.89348 -34.68334 -33.20622 -32.35382 -31.56031 -30.67006 -29.46196 -27.03194 -25.76436 -24.62161 -24.05163 -22.35908 -22.06658 -20.98041 -19.01845 -17.42415 -16.91041 -16.19384 -15.86483 -15.44774 -15.33950 -15.08756 -15.07910 -14.75289 -14.39079 -14.32368 -14.02141 -13.63243 -13.32793 -13.22494 -12.94134 -12.50738 -12.37168 -12.03136 -11.93295 -11.77376 -11.66989 -11.34621 -11.18627 -11.04226 -11.00393 -10.82545 -10.64649 -10.58436 -10.36010 -10.14996 -10.01155 -9.36085 -9.11882 -8.96051 -8.67334 -8.39616 -7.51048 -7.21715 -6.33524 -3.97259 1.50524 1.52890 1.68784 2.43990 3.15974 3.26687 3.32693 3.90070 3.96952 4.18971 4.51266 4.64712 4.67796 4.84074 5.02339 5.09216 5.12231 5.17097 5.35037 5.44377 5.48915 5.65846 5.70146 5.71736 5.72090 5.76614 5.96030 5.97563 6.01380 6.05971 6.09735 6.33795 6.36596 6.40406 6.47092 6.50430 6.62227 6.76589 7.04256 7.22358 7.29802 7.49256 7.81379 7.99870 8.39344 9.13619 9.54319 9.96069 10.69204 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.018035 B = 0.002930 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.183646 B = 9555.468818 C =10276.707040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 S -0.137 6.137 4 C -0.095 4.095 5 C -0.131 4.131 6 C -0.091 4.091 7 C -0.041 4.041 8 C -0.087 4.087 9 C 0.469 3.531 10 O -0.604 6.604 11 N -0.429 5.429 12 C -0.325 4.325 13 H 0.088 0.912 14 C 0.048 3.952 15 N -0.863 5.863 16 Si 0.914 3.086 17 H -0.280 1.280 18 H -0.283 1.283 19 H -0.269 1.269 20 C 0.114 3.886 21 C 0.052 3.948 22 O -0.365 6.365 23 C 0.031 3.969 24 C -0.089 4.089 25 C -0.098 4.098 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.268 0.732 36 H 0.117 0.883 37 H 0.068 0.932 38 H 0.038 0.962 39 H 0.040 0.960 40 H 0.031 0.969 41 H 0.077 0.923 42 H 0.030 0.970 43 H 0.126 0.874 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.970 -5.178 -2.951 14.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.258 4.258 3 S 0.104 5.896 4 C -0.207 4.207 5 C -0.155 4.155 6 C -0.111 4.111 7 C -0.043 4.043 8 C -0.127 4.127 9 C 0.258 3.742 10 O -0.490 6.490 11 N -0.146 5.146 12 C -0.453 4.453 13 H 0.105 0.895 14 C -0.157 4.157 15 N -0.500 5.500 16 Si 0.740 3.260 17 H -0.206 1.206 18 H -0.209 1.209 19 H -0.193 1.193 20 C -0.010 4.010 21 C -0.025 4.025 22 O -0.283 6.283 23 C -0.066 4.066 24 C -0.109 4.109 25 C -0.121 4.121 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.106 0.894 34 H 0.116 0.884 35 H 0.079 0.921 36 H 0.134 0.866 37 H 0.086 0.914 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.049 0.951 41 H 0.095 0.905 42 H 0.048 0.952 43 H 0.144 0.856 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.813 -3.989 -2.569 14.605 hybrid contribution 1.600 -1.698 -0.168 2.339 sum -12.213 -5.688 -2.737 13.747 Atomic orbital electron populations 1.21509 0.92040 1.02732 1.03192 1.23545 1.00154 0.96492 1.05563 1.85289 0.99160 1.11575 1.93527 1.21474 0.95665 0.96522 1.07086 1.20979 0.95618 0.95103 1.03763 1.20864 0.92550 0.98557 0.99148 1.19689 0.95344 0.92947 0.96322 1.20475 0.90339 1.04409 0.97438 1.20187 0.83306 0.80870 0.89808 1.90545 1.55983 1.56380 1.46141 1.43344 1.04412 1.61498 1.05372 1.19287 0.94118 1.35797 0.96077 0.89471 1.25222 0.99235 0.93812 0.97432 1.69907 1.22494 1.21753 1.35817 0.86160 0.80543 0.79705 0.79543 1.20596 1.20885 1.19313 1.21467 1.04131 0.91557 0.83812 1.23040 0.92714 0.93180 0.93598 1.88132 1.64093 1.16704 1.59360 1.22639 1.00266 0.85065 0.98668 1.20960 0.94053 0.97230 0.98626 1.20635 0.92984 0.96937 1.01559 0.91638 0.90936 0.91600 0.89553 0.89489 0.86529 0.86149 0.89383 0.88402 0.92131 0.86582 0.91366 0.94382 0.94126 0.95051 0.90452 0.95174 0.85593 0.85973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.92 37.16 0.37 -0.63 16 2 C -0.11 -1.04 5.05 37.16 0.19 -0.85 16 3 S -0.14 -1.72 21.92 -107.50 -2.36 -4.08 16 4 C -0.10 -1.45 6.11 -39.04 -0.24 -1.69 16 5 C -0.13 -1.98 9.36 -39.37 -0.37 -2.35 16 6 C -0.09 -1.52 9.69 -39.61 -0.38 -1.91 16 7 C -0.04 -0.74 4.38 -104.57 -0.46 -1.20 16 8 C -0.09 -1.71 4.49 -29.03 -0.13 -1.84 16 9 C 0.47 11.20 7.59 -10.99 -0.08 11.11 16 10 O -0.60 -15.71 15.71 5.55 0.09 -15.62 16 11 N -0.43 -10.64 2.51 -114.82 -0.29 -10.93 16 12 C -0.33 -8.13 8.48 -14.93 -0.13 -8.26 16 13 H 0.09 2.08 6.98 -52.49 -0.37 1.72 16 14 C 0.05 1.21 4.93 -17.47 -0.09 1.13 16 15 N -0.86 -22.61 11.34 55.50 0.63 -21.98 16 16 Si 0.91 19.77 29.61 -169.99 -5.03 14.73 16 17 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 20 C 0.11 2.73 5.29 -4.04 -0.02 2.71 16 21 C 0.05 1.10 6.24 37.16 0.23 1.33 16 22 O -0.36 -7.78 10.44 -35.23 -0.37 -8.15 16 23 C 0.03 0.49 11.01 101.05 1.11 1.61 16 24 C -0.09 -1.53 9.69 -39.62 -0.38 -1.91 16 25 C -0.10 -1.54 9.79 -39.36 -0.39 -1.93 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.77 7.76 -51.92 -0.40 0.36 16 30 H 0.09 0.83 7.74 -51.92 -0.40 0.42 16 31 H 0.12 1.46 5.88 -52.49 -0.31 1.15 16 32 H 0.12 1.85 8.06 -52.48 -0.42 1.43 16 33 H 0.09 1.61 7.59 -51.93 -0.39 1.22 16 34 H 0.10 1.88 8.04 -51.93 -0.42 1.46 16 35 H 0.27 6.67 8.31 -40.82 -0.34 6.34 16 36 H 0.12 2.98 5.36 -51.93 -0.28 2.70 16 37 H 0.07 1.65 7.59 -51.93 -0.39 1.26 16 38 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.13 2.04 8.06 -52.49 -0.42 1.62 16 44 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 379.43 15.07 5.72 5.72 Total: -1.00 -30.05 379.43 -9.13 -39.17 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -6.75 Total: 5.79 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -0.76 Total: -4.65 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: 0.34 Total: -32.91 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.28 Total: -23.77 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.03 Total: 14.73 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.36 Total: -4.08 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.05 -9.13 -39.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457203398.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.866 kcal (2) G-P(sol) polarization free energy of solvation -30.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds