Wall clock time and date at job start Tue Mar 31 2020 14:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 O 1.42103 * 109.47287 * 2 1 4 4 C 1.76202 * 103.00197 * 250.94447 * 2 1 3 5 5 C 1.38235 * 120.00249 * 89.99703 * 4 2 1 6 6 C 1.38234 * 120.00220 * 179.97438 * 5 4 2 7 7 C 1.38233 * 120.00037 * 0.28719 * 6 5 4 8 8 C 1.50693 * 120.00207 * 179.72405 * 7 6 5 9 9 N 1.46499 * 109.47329 * 89.99403 * 8 7 6 10 10 C 1.34779 * 120.00064 * 180.02562 * 9 8 7 11 11 O 1.21276 * 120.00290 * 0.02562 * 10 9 8 12 12 C 1.50704 * 119.99687 * 180.02562 * 10 9 8 13 13 C 1.53003 * 109.46840 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47117 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47115 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47273 * 180.02562 * 15 14 13 17 17 H 1.08007 * 119.99878 * 359.97438 * 16 15 14 18 18 C 1.37880 * 120.00526 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99542 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00298 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47223 * 89.99352 * 20 18 16 22 22 H 1.48503 * 109.47052 * 209.99637 * 20 18 16 23 23 H 1.48498 * 109.47163 * 329.99477 * 20 18 16 24 24 C 1.38238 * 119.99742 * 359.52139 * 7 6 5 25 25 C 1.38233 * 120.00121 * 0.41161 * 24 7 6 26 26 H 1.08997 * 109.47616 * 169.05251 * 1 2 3 27 27 H 1.09000 * 109.47499 * 289.05607 * 1 2 3 28 28 H 1.09008 * 109.47248 * 49.05865 * 1 2 3 29 29 H 1.07999 * 119.99770 * 359.97438 * 5 4 2 30 30 H 1.08002 * 119.99744 * 180.02562 * 6 5 4 31 31 H 1.09000 * 109.47097 * 209.99342 * 8 7 6 32 32 H 1.09001 * 109.47081 * 329.99847 * 8 7 6 33 33 H 0.97003 * 120.00275 * 0.02562 * 9 8 7 34 34 H 1.09000 * 109.47011 * 299.99724 * 12 10 9 35 35 H 1.08993 * 109.47283 * 60.00134 * 12 10 9 36 36 H 1.09004 * 109.46766 * 300.00012 * 13 12 10 37 37 H 1.08998 * 109.47224 * 59.99378 * 13 12 10 38 38 H 1.08994 * 109.47016 * 300.00074 * 14 13 12 39 39 H 1.09006 * 109.47180 * 59.99691 * 14 13 12 40 40 H 1.09000 * 109.47133 * 299.99871 * 15 14 13 41 41 H 1.08993 * 109.47036 * 60.00204 * 15 14 13 42 42 H 0.96996 * 119.99815 * 180.02562 * 19 18 16 43 43 H 1.08004 * 120.00362 * 180.23482 * 24 7 6 44 44 H 1.08002 * 120.00315 * 179.82598 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2104 -0.5605 -1.6228 5 6 2.3658 0.3511 -2.6502 6 6 2.6773 -0.0886 -3.9232 7 6 2.8276 -1.4404 -4.1701 8 6 3.1611 -1.9202 -5.5591 9 7 4.6161 -1.9788 -5.7194 10 6 5.1495 -2.3830 -6.8893 11 8 4.4250 -2.6977 -7.8095 12 6 6.6463 -2.4438 -7.0538 13 6 6.9848 -2.9297 -8.4646 14 6 8.5044 -2.9908 -8.6320 15 6 8.8429 -3.4772 -10.0425 16 6 10.3396 -3.5381 -10.2072 17 1 10.9849 -3.2574 -9.3878 18 6 10.8854 -3.9510 -11.4042 19 7 10.0996 -4.2923 -12.4021 20 14 12.7406 -4.0258 -11.6085 21 1 13.2291 -5.3694 -11.2072 22 1 13.0927 -3.7750 -13.0292 23 1 13.3750 -2.9922 -10.7515 24 6 2.6760 -2.3518 -3.1418 25 6 2.3659 -1.9120 -1.8685 26 1 -0.3634 -1.0089 -0.1952 27 1 -0.3634 0.3355 0.9713 28 1 -0.3634 0.6735 -0.7763 29 1 2.2439 1.4069 -2.4584 30 1 2.7992 0.6237 -4.7258 31 1 2.7384 -2.9133 -5.7117 32 1 2.7424 -1.2305 -6.2920 33 1 5.1957 -1.7268 -4.9835 34 1 7.0692 -1.4510 -6.9006 35 1 7.0646 -3.1340 -6.3214 36 1 6.5617 -3.9224 -8.6183 37 1 6.5664 -2.2391 -9.1969 38 1 8.9270 -1.9980 -8.4784 39 1 8.9231 -3.6812 -7.8997 40 1 8.4203 -4.4702 -10.1956 41 1 8.4242 -2.7873 -10.7750 42 1 10.4835 -4.5832 -13.2440 43 1 2.7971 -3.4077 -3.3337 44 1 2.2447 -2.6242 -1.0657 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588160895.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:24 Heat of formation + Delta-G solvation = -75.246977 kcal Electronic energy + Delta-G solvation = -22946.292639 eV Core-core repulsion = 19375.262212 eV Total energy + Delta-G solvation = -3571.030427 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.18034 -39.28340 -36.24778 -35.36929 -34.75880 -32.65372 -31.92354 -31.50258 -29.76156 -29.33570 -26.94950 -25.21003 -23.31324 -22.53600 -21.81460 -20.33893 -19.95954 -18.67971 -17.40896 -16.80237 -16.31486 -16.26267 -16.00554 -15.58185 -15.38052 -15.33759 -14.52597 -14.41278 -14.28722 -14.16466 -13.87626 -13.68286 -13.21923 -13.13257 -12.99936 -12.60589 -12.46208 -12.09613 -12.02517 -11.68055 -11.62270 -11.57649 -10.97292 -10.75399 -10.53113 -10.49549 -10.40016 -10.05150 -9.60252 -9.56859 -9.48430 -9.25182 -9.20073 -8.97301 -8.90820 -8.29278 -5.94113 -3.96589 0.27414 0.85597 1.32656 2.13478 2.69262 2.90164 3.32172 3.34860 3.40859 3.44079 3.45751 4.16321 4.27170 4.45818 4.49999 4.62302 4.69051 4.84977 4.86358 4.87299 5.18031 5.21190 5.32429 5.37849 5.41319 5.41416 5.43850 5.51183 5.68641 5.73842 5.86537 6.02391 6.14841 6.20558 6.31524 6.38212 6.55743 6.85095 7.03001 7.21179 7.37874 7.75376 7.91412 8.07331 8.21677 8.49207 9.11112 9.67006 11.17197 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.033812 B = 0.001522 C = 0.001486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.905540 B =18393.365046 C =18832.681870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.498 4.498 2 S 1.333 4.667 3 O -0.856 6.856 4 C -0.458 4.458 5 C -0.055 4.055 6 C -0.116 4.116 7 C -0.069 4.069 8 C 0.155 3.845 9 N -0.735 5.735 10 C 0.513 3.487 11 O -0.534 6.534 12 C -0.138 4.138 13 C -0.103 4.103 14 C -0.111 4.111 15 C 0.019 3.981 16 C -0.521 4.521 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.118 4.118 25 C -0.046 4.046 26 H 0.111 0.889 27 H 0.106 0.894 28 H 0.081 0.919 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.401 0.599 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.260 0.740 43 H 0.133 0.867 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.556 4.950 30.368 37.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 1.529 4.471 3 O -0.852 6.852 4 C -0.554 4.554 5 C -0.074 4.074 6 C -0.135 4.135 7 C -0.069 4.069 8 C 0.031 3.969 9 N -0.389 5.389 10 C 0.300 3.700 11 O -0.410 6.410 12 C -0.178 4.178 13 C -0.141 4.141 14 C -0.148 4.148 15 C -0.018 4.018 16 C -0.559 4.559 17 H 0.072 0.928 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.138 4.138 25 C -0.065 4.065 26 H 0.130 0.870 27 H 0.124 0.876 28 H 0.100 0.900 29 H 0.146 0.854 30 H 0.146 0.854 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.235 0.765 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.150 0.850 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -21.484 4.937 30.211 37.398 hybrid contribution 0.326 1.365 -1.624 2.147 sum -21.158 6.301 28.586 36.118 Atomic orbital electron populations 1.27767 1.22315 1.08028 1.07392 1.69545 0.86031 0.99667 0.91811 1.93127 1.73153 1.37242 1.81653 1.27745 1.11630 0.99737 1.16319 1.21130 0.94417 0.99624 0.92210 1.21240 0.99754 0.95274 0.97281 1.20152 0.97714 0.93742 0.95319 1.20218 0.82153 1.02154 0.92325 1.46141 1.06589 1.70129 1.16072 1.21157 0.91799 0.75650 0.81358 1.90713 1.62863 1.47502 1.39891 1.21799 0.90342 1.03797 1.01847 1.21457 0.98132 1.01757 0.92791 1.21652 0.92015 1.00188 1.00962 1.19098 0.96062 0.96464 0.90144 1.21291 0.92243 1.44215 0.98154 0.92752 1.25041 0.97894 0.95549 0.96071 1.69976 1.34611 1.45326 1.03538 0.86608 0.85926 0.78311 0.77219 1.20710 1.21261 1.19936 1.21268 0.99889 0.99946 0.92659 1.20863 0.95046 0.93560 0.97019 0.86987 0.87553 0.89974 0.85424 0.85434 0.90338 0.90546 0.76458 0.89111 0.89055 0.91778 0.91817 0.93475 0.93456 0.96577 0.96585 0.93063 0.84958 0.84290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -1.63 10.70 101.05 1.08 -0.55 16 2 S 1.33 5.43 14.19 -107.50 -1.53 3.91 16 3 O -0.86 -9.50 16.90 -35.23 -0.60 -10.09 16 4 C -0.46 -2.79 5.61 -39.58 -0.22 -3.01 16 5 C -0.05 -0.46 9.44 -39.58 -0.37 -0.84 16 6 C -0.12 -0.94 9.70 -39.58 -0.38 -1.32 16 7 C -0.07 -0.52 5.25 -104.63 -0.55 -1.07 16 8 C 0.15 1.40 5.80 -5.20 -0.03 1.37 16 9 N -0.74 -7.23 5.55 -61.47 -0.34 -7.57 16 10 C 0.51 7.01 7.83 -10.98 -0.09 6.93 16 11 O -0.53 -9.62 15.98 5.56 0.09 -9.53 16 12 C -0.14 -1.82 5.70 -27.88 -0.16 -1.98 16 13 C -0.10 -1.86 4.50 -26.73 -0.12 -1.98 16 14 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 15 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 16 C -0.52 -15.11 9.11 -34.44 -0.31 -15.43 16 17 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.63 13.29 55.43 0.74 -26.90 16 20 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 24 C -0.12 -0.69 9.70 -39.58 -0.38 -1.08 16 25 C -0.05 -0.20 9.75 -39.58 -0.39 -0.59 16 26 H 0.11 0.13 8.14 -51.93 -0.42 -0.30 16 27 H 0.11 0.25 8.14 -51.92 -0.42 -0.17 16 28 H 0.08 0.45 8.14 -51.92 -0.42 0.02 16 29 H 0.13 1.20 7.45 -52.49 -0.39 0.81 16 30 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 31 H 0.08 0.73 8.09 -51.93 -0.42 0.31 16 32 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 33 H 0.40 3.02 8.46 -40.82 -0.35 2.68 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 37 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 44 H 0.14 0.03 8.06 -52.49 -0.42 -0.40 16 LS Contribution 387.24 15.07 5.84 5.84 Total: -1.00 -40.25 387.24 -10.15 -50.40 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -7.03 Total: -2.99 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -2.30 Total: -20.06 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: 0.40 Total: -34.46 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.51 Total: -19.62 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 5.43 SS G_CDS: -1.53 Total: 3.91 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -40.25 -10.15 -50.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588160895.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.845 kcal (2) G-P(sol) polarization free energy of solvation -40.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds