Wall clock time and date at job start Tue Mar 31 2020 14:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34723 * 116.99986 * 2 1 4 4 O 1.21487 * 120.00082 * 0.02562 * 3 2 1 5 5 C 1.47610 * 120.00078 * 179.97438 * 3 2 1 6 6 C 1.39719 * 120.09552 * 0.02562 * 5 3 2 7 7 C 1.37881 * 120.00602 * 180.02562 * 6 5 3 8 8 C 1.38522 * 120.20557 * 0.02562 * 7 6 5 9 9 F 1.35092 * 119.90598 * 179.97438 * 8 7 6 10 10 C 1.39236 * 120.18695 * 359.97438 * 8 7 6 11 11 N 1.40068 * 120.00489 * 179.97438 * 10 8 7 12 12 C 1.34775 * 120.00278 * 214.95134 * 11 10 8 13 13 O 1.21290 * 119.99702 * 355.52366 * 12 11 10 14 14 C 1.50697 * 120.00257 * 175.53130 * 12 11 10 15 15 C 1.53007 * 109.47297 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.46929 * 179.97438 * 15 14 12 17 17 C 1.53007 * 109.46935 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.47306 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99545 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99947 * 180.02562 * 18 17 16 21 21 N 1.31513 * 119.99910 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 119.99989 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47383 * 90.00323 * 22 20 18 24 24 H 1.48500 * 109.46972 * 210.00387 * 22 20 18 25 25 H 1.48499 * 109.47380 * 329.99923 * 22 20 18 26 26 C 1.38451 * 119.99135 * 0.25832 * 10 8 7 27 27 H 1.09003 * 109.47154 * 59.99887 * 1 2 3 28 28 H 1.09001 * 109.47064 * 179.97438 * 1 2 3 29 29 H 1.08990 * 109.47114 * 299.99593 * 1 2 3 30 30 H 1.07994 * 119.99461 * 359.97438 * 6 5 3 31 31 H 1.07998 * 119.89649 * 179.97438 * 7 6 5 32 32 H 0.97000 * 120.00165 * 34.94358 * 11 10 8 33 33 H 1.09006 * 109.46771 * 299.99467 * 14 12 11 34 34 H 1.09002 * 109.47391 * 59.99334 * 14 12 11 35 35 H 1.08993 * 109.46686 * 299.99705 * 15 14 12 36 36 H 1.08998 * 109.46815 * 59.99654 * 15 14 12 37 37 H 1.08993 * 109.47559 * 299.99616 * 16 15 14 38 38 H 1.08998 * 109.47291 * 60.00391 * 16 15 14 39 39 H 1.08998 * 109.47441 * 300.00515 * 17 16 15 40 40 H 1.09002 * 109.46924 * 60.00127 * 17 16 15 41 41 H 0.97000 * 120.00003 * 180.02562 * 21 20 18 42 42 H 1.08000 * 120.10491 * 179.72423 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4020 2.2193 0.0005 5 6 3.5377 1.2777 0.0006 6 6 4.3006 0.1072 0.0006 7 6 5.6774 0.1815 0.0016 8 6 6.3088 1.4145 0.0033 9 9 7.6581 1.4803 0.0048 10 6 5.5566 2.5862 0.0033 11 7 6.1990 3.8309 0.0054 12 6 5.6569 4.8678 0.6743 13 8 4.5736 4.7466 1.2062 14 6 6.3967 6.1779 0.7611 15 6 5.5679 7.1790 1.5686 16 6 6.3193 8.5088 1.6573 17 6 5.4903 9.5102 2.4642 18 6 6.2300 10.8202 2.5511 19 1 7.1951 10.9277 2.0784 20 6 5.6752 11.8812 3.2349 21 7 6.3206 13.0246 3.3103 22 14 4.0063 11.6949 4.0530 23 1 4.1888 11.2142 5.4462 24 1 3.3137 13.0084 4.0693 25 1 3.1896 10.7141 3.2939 26 6 4.1737 2.5208 0.0071 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8899 30 1 3.8119 -0.8558 0.0006 31 1 6.2654 -0.7244 0.0021 32 1 7.0340 3.9466 -0.4743 33 1 7.3571 6.0209 1.2523 34 1 6.5616 6.5693 -0.2427 35 1 4.6078 7.3358 1.0771 36 1 5.4027 6.7878 2.5724 37 1 7.2793 8.3517 2.1490 38 1 6.4849 8.9003 0.6536 39 1 4.5304 9.6672 1.9723 40 1 5.3243 9.1190 3.4680 41 1 5.9304 13.7709 3.7917 42 1 3.5884 3.4285 0.0116 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588840134.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:02 Heat of formation + Delta-G solvation = -153.687447 kcal Electronic energy + Delta-G solvation = -25850.381591 eV Core-core repulsion = 21709.736553 eV Total energy + Delta-G solvation = -4140.645038 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.48003 -41.13124 -40.44041 -38.68490 -36.77146 -35.42075 -34.96815 -32.65203 -31.54673 -30.96807 -29.68077 -28.06899 -26.10015 -24.54408 -23.77270 -22.14344 -21.35656 -20.47921 -20.06599 -18.85864 -18.16090 -17.63956 -17.12931 -16.80023 -16.73663 -16.51312 -16.39427 -15.94007 -15.72238 -14.65436 -14.42147 -14.33163 -14.23440 -14.03303 -13.81087 -13.66062 -13.27560 -12.82095 -12.67618 -12.54644 -12.44171 -12.21530 -12.00030 -11.77835 -11.19156 -11.15771 -11.00399 -10.87150 -10.77938 -10.57357 -10.11985 -9.85248 -9.66670 -9.50287 -9.42930 -9.12946 -8.69811 -8.49476 -6.00675 -3.98278 0.03593 0.65958 1.95718 2.18706 2.38885 2.65428 3.15899 3.35645 3.42771 3.48799 3.56388 4.13739 4.23808 4.47574 4.50142 4.52810 4.70535 4.72995 4.81682 4.92529 5.09311 5.14295 5.17987 5.27958 5.34112 5.48450 5.54381 5.66110 5.74524 5.81072 5.95858 5.96676 6.07951 6.32397 6.37577 6.63784 6.77280 6.93872 6.98631 7.34815 7.36681 7.49479 7.82909 7.85309 8.57779 9.04126 9.62639 11.12752 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014563 B = 0.002342 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.260000 B =11952.293972 C =13689.487482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.356 6.356 3 C 0.509 3.491 4 O -0.492 6.492 5 C -0.119 4.119 6 C -0.052 4.052 7 C -0.148 4.148 8 C 0.106 3.894 9 F -0.128 7.128 10 C 0.111 3.889 11 N -0.678 5.678 12 C 0.514 3.486 13 O -0.510 6.510 14 C -0.136 4.136 15 C -0.108 4.108 16 C -0.102 4.102 17 C -0.016 4.016 18 C -0.520 4.520 19 H 0.071 0.929 20 C 0.064 3.936 21 N -0.906 5.906 22 Si 0.880 3.120 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.264 1.264 26 C -0.034 4.034 27 H 0.065 0.935 28 H 0.104 0.896 29 H 0.065 0.935 30 H 0.150 0.850 31 H 0.150 0.850 32 H 0.417 0.583 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.016 0.984 40 H 0.011 0.989 41 H 0.262 0.738 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.439 -33.260 -10.666 35.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.353 3.647 4 O -0.380 6.380 5 C -0.121 4.121 6 C -0.071 4.071 7 C -0.167 4.167 8 C 0.084 3.916 9 F -0.107 7.107 10 C 0.015 3.985 11 N -0.324 5.324 12 C 0.303 3.697 13 O -0.383 6.383 14 C -0.176 4.176 15 C -0.146 4.146 16 C -0.140 4.140 17 C -0.053 4.053 18 C -0.558 4.558 19 H 0.089 0.911 20 C -0.136 4.136 21 N -0.545 5.545 22 Si 0.707 3.293 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.189 1.189 26 C -0.054 4.054 27 H 0.083 0.917 28 H 0.122 0.878 29 H 0.084 0.916 30 H 0.168 0.832 31 H 0.167 0.833 32 H 0.254 0.746 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.034 0.966 40 H 0.030 0.970 41 H 0.072 0.928 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.402 -32.762 -10.175 34.587 hybrid contribution -0.267 0.123 0.267 0.397 sum -4.669 -32.640 -9.908 34.428 Atomic orbital electron populations 1.23320 0.75562 1.03877 1.02955 1.86510 1.23866 1.32406 1.84502 1.20976 0.88819 0.81665 0.73237 1.90908 1.66540 1.35895 1.44658 1.18973 0.89635 0.94209 1.09324 1.21285 0.92587 0.98460 0.94751 1.20972 0.95139 0.96303 1.04268 1.17822 0.76999 0.93407 1.03347 1.91525 1.28433 1.97142 1.93587 1.17556 0.91649 0.84800 1.04500 1.43651 1.27506 1.08163 1.53128 1.21461 0.86356 0.85538 0.76347 1.90739 1.20509 1.82598 1.44451 1.21817 1.00599 0.91148 1.03990 1.21527 0.98696 0.94609 0.99764 1.21474 0.98817 0.93017 1.00690 1.19578 0.95948 0.94813 0.94965 1.21171 1.05942 0.94716 1.33934 0.91099 1.25045 0.97470 0.95172 0.95947 1.69919 1.38708 1.02775 1.43074 0.86773 0.84870 0.77428 0.80222 1.20322 1.21454 1.18886 1.21390 0.92222 0.98709 0.93068 0.91657 0.87805 0.91584 0.83223 0.83252 0.74642 0.88311 0.88320 0.91536 0.91608 0.92764 0.92724 0.96578 0.97043 0.92809 0.81561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.07 9.81 -40.55 -0.40 -3.47 16 3 C 0.51 5.70 7.89 34.55 0.27 5.97 16 4 O -0.49 -7.16 16.13 -19.26 -0.31 -7.47 16 5 C -0.12 -1.20 5.87 -105.00 -0.62 -1.82 16 6 C -0.05 -0.36 9.61 -39.16 -0.38 -0.74 16 7 C -0.15 -0.96 10.00 -39.61 -0.40 -1.36 16 8 C 0.11 0.90 7.32 -39.11 -0.29 0.62 16 9 F -0.13 -1.09 16.94 2.25 0.04 -1.05 16 10 C 0.11 1.14 6.31 -83.64 -0.53 0.61 16 11 N -0.68 -6.57 5.22 -9.84 -0.05 -6.62 16 12 C 0.51 6.45 7.67 -10.99 -0.08 6.37 16 13 O -0.51 -8.38 13.40 5.55 0.07 -8.31 16 14 C -0.14 -1.58 5.70 -27.88 -0.16 -1.74 16 15 C -0.11 -1.74 4.50 -26.73 -0.12 -1.86 16 16 C -0.10 -1.97 5.15 -26.73 -0.14 -2.11 16 17 C -0.02 -0.38 4.04 -27.88 -0.11 -0.50 16 18 C -0.52 -15.08 9.66 -34.44 -0.33 -15.41 16 19 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 20 C 0.06 1.92 5.47 -17.82 -0.10 1.83 16 21 N -0.91 -28.40 13.96 55.43 0.77 -27.63 16 22 Si 0.88 22.44 27.47 -169.99 -4.67 17.77 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.26 -6.55 6.54 56.52 0.37 -6.18 16 26 C -0.03 -0.39 8.24 -38.98 -0.32 -0.71 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.15 0.68 7.60 -52.49 -0.40 0.29 16 31 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 32 H 0.42 2.76 8.66 -40.82 -0.35 2.41 16 33 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 36 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 40 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 41 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 42 H 0.17 2.38 5.78 -52.49 -0.30 2.08 16 LS Contribution 366.04 15.07 5.52 5.52 Total: -1.00 -36.01 366.04 -6.89 -42.90 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -5.63 Total: -2.09 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -2.23 Total: -9.55 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.72 Total: -34.24 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.63 Total: -19.25 kcal Atomic # 9 Polarization: -1.09 SS G_CDS: 0.04 Total: -1.05 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.67 Total: 17.77 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.01 -6.89 -42.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588840134.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.788 kcal (2) G-P(sol) polarization free energy of solvation -36.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds