Wall clock time and date at job start Tue Mar 31 2020 14:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34723 * 116.99986 * 2 1 4 4 O 1.21487 * 120.00082 * 0.02562 * 3 2 1 5 5 C 1.47610 * 120.00078 * 179.97438 * 3 2 1 6 6 C 1.39719 * 120.09552 * 0.02562 * 5 3 2 7 7 C 1.37881 * 120.00602 * 180.02562 * 6 5 3 8 8 C 1.38522 * 120.20557 * 0.02562 * 7 6 5 9 9 F 1.35092 * 119.90598 * 179.97438 * 8 7 6 10 10 C 1.39236 * 120.18695 * 359.97438 * 8 7 6 11 11 N 1.40068 * 120.00489 * 179.97438 * 10 8 7 12 12 C 1.34775 * 120.00278 * 214.95134 * 11 10 8 13 13 O 1.21290 * 119.99702 * 355.52366 * 12 11 10 14 14 C 1.50697 * 120.00257 * 175.53130 * 12 11 10 15 15 C 1.53007 * 109.47297 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.46929 * 179.97438 * 15 14 12 17 17 C 1.53007 * 109.46935 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.47306 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99545 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99947 * 180.02562 * 18 17 16 21 21 N 1.31513 * 119.99910 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 119.99989 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47383 * 90.00323 * 22 20 18 24 24 H 1.48500 * 109.46972 * 210.00387 * 22 20 18 25 25 H 1.48499 * 109.47380 * 329.99923 * 22 20 18 26 26 C 1.38451 * 119.99135 * 0.25832 * 10 8 7 27 27 H 1.09003 * 109.47154 * 59.99887 * 1 2 3 28 28 H 1.09001 * 109.47064 * 179.97438 * 1 2 3 29 29 H 1.08990 * 109.47114 * 299.99593 * 1 2 3 30 30 H 1.07994 * 119.99461 * 359.97438 * 6 5 3 31 31 H 1.07998 * 119.89649 * 179.97438 * 7 6 5 32 32 H 0.97000 * 120.00165 * 34.94358 * 11 10 8 33 33 H 1.09006 * 109.46771 * 299.99467 * 14 12 11 34 34 H 1.09002 * 109.47391 * 59.99334 * 14 12 11 35 35 H 1.08993 * 109.46686 * 299.99705 * 15 14 12 36 36 H 1.08998 * 109.46815 * 59.99654 * 15 14 12 37 37 H 1.08993 * 109.47559 * 299.99616 * 16 15 14 38 38 H 1.08998 * 109.47291 * 60.00391 * 16 15 14 39 39 H 1.08998 * 109.47441 * 300.00515 * 17 16 15 40 40 H 1.09002 * 109.46924 * 60.00127 * 17 16 15 41 41 H 0.97000 * 120.00003 * 180.02562 * 21 20 18 42 42 H 1.08000 * 120.10491 * 179.72423 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4020 2.2193 0.0005 5 6 3.5377 1.2777 0.0006 6 6 4.3006 0.1072 0.0006 7 6 5.6774 0.1815 0.0016 8 6 6.3088 1.4145 0.0033 9 9 7.6581 1.4803 0.0048 10 6 5.5566 2.5862 0.0033 11 7 6.1990 3.8309 0.0054 12 6 5.6569 4.8678 0.6743 13 8 4.5736 4.7466 1.2062 14 6 6.3967 6.1779 0.7611 15 6 5.5679 7.1790 1.5686 16 6 6.3193 8.5088 1.6573 17 6 5.4903 9.5102 2.4642 18 6 6.2300 10.8202 2.5511 19 1 7.1951 10.9277 2.0784 20 6 5.6752 11.8812 3.2349 21 7 6.3206 13.0246 3.3103 22 14 4.0063 11.6949 4.0530 23 1 4.1888 11.2142 5.4462 24 1 3.3137 13.0084 4.0693 25 1 3.1896 10.7141 3.2939 26 6 4.1737 2.5208 0.0071 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8899 30 1 3.8119 -0.8558 0.0006 31 1 6.2654 -0.7244 0.0021 32 1 7.0340 3.9466 -0.4743 33 1 7.3571 6.0209 1.2523 34 1 6.5616 6.5693 -0.2427 35 1 4.6078 7.3358 1.0771 36 1 5.4027 6.7878 2.5724 37 1 7.2793 8.3517 2.1490 38 1 6.4849 8.9003 0.6536 39 1 4.5304 9.6672 1.9723 40 1 5.3243 9.1190 3.4680 41 1 5.9304 13.7709 3.7917 42 1 3.5884 3.4285 0.0116 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588840134.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:02 Heat of formation + Delta-G solvation = -176.761221 kcal Electronic energy + Delta-G solvation = -25851.382145 eV Core-core repulsion = 21709.736553 eV Total energy + Delta-G solvation = -4141.645591 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.13775 -41.94281 -41.31679 -39.46827 -37.58504 -36.78293 -36.04461 -34.64317 -32.30387 -32.22909 -30.86742 -28.66656 -27.67284 -25.27256 -24.80515 -23.46990 -22.16324 -21.76941 -21.42420 -19.62768 -18.94159 -18.84439 -18.36039 -17.96999 -17.51562 -17.46377 -17.22072 -16.73271 -16.61802 -16.32446 -15.71298 -15.36212 -15.06640 -14.99252 -14.70136 -14.54755 -14.43463 -14.03128 -13.89241 -13.73363 -13.57647 -13.43696 -13.09251 -12.88244 -12.70602 -12.36930 -12.10942 -11.88134 -11.86513 -11.77360 -11.68936 -11.53199 -11.35546 -11.27599 -10.92537 -10.76960 -10.13059 -9.44496 -8.30680 -6.33468 -0.68054 -0.02776 1.16903 1.33401 1.35111 1.47328 1.47768 1.50152 1.86031 2.34659 2.45226 2.88359 3.04717 3.51418 3.54783 3.62369 3.90496 3.94193 4.01532 4.12151 4.25594 4.30670 4.31270 4.55106 4.61872 4.65947 4.73024 4.73070 4.78004 4.83000 4.92197 5.07180 5.11248 5.12075 5.18512 5.21247 5.27759 5.58916 5.63024 5.64531 5.67864 6.18953 6.28721 6.55611 6.74521 6.96544 7.31294 8.85814 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014563 B = 0.002342 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.260000 B =11952.293972 C =13689.487482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.347 6.347 3 C 0.510 3.490 4 O -0.539 6.539 5 C -0.135 4.135 6 C -0.032 4.032 7 C -0.132 4.132 8 C 0.112 3.888 9 F -0.125 7.125 10 C 0.093 3.907 11 N -0.663 5.663 12 C 0.515 3.485 13 O -0.556 6.556 14 C -0.127 4.127 15 C -0.100 4.100 16 C -0.093 4.093 17 C -0.018 4.018 18 C -0.529 4.529 19 H 0.038 0.962 20 C 0.003 3.997 21 N -0.950 5.950 22 Si 0.946 3.054 23 H -0.267 1.267 24 H -0.282 1.282 25 H -0.254 1.254 26 C -0.055 4.055 27 H 0.062 0.938 28 H 0.142 0.858 29 H 0.058 0.942 30 H 0.182 0.818 31 H 0.189 0.811 32 H 0.432 0.568 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.013 0.987 40 H 0.012 0.988 41 H 0.266 0.734 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.113 -36.919 -11.049 38.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.263 6.263 3 C 0.356 3.644 4 O -0.430 6.430 5 C -0.137 4.137 6 C -0.050 4.050 7 C -0.150 4.150 8 C 0.090 3.910 9 F -0.104 7.104 10 C -0.003 4.003 11 N -0.311 5.311 12 C 0.305 3.695 13 O -0.433 6.433 14 C -0.166 4.166 15 C -0.138 4.138 16 C -0.131 4.131 17 C -0.056 4.056 18 C -0.567 4.567 19 H 0.057 0.943 20 C -0.193 4.193 21 N -0.591 5.591 22 Si 0.770 3.230 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.178 1.178 26 C -0.076 4.076 27 H 0.080 0.920 28 H 0.160 0.840 29 H 0.076 0.924 30 H 0.199 0.801 31 H 0.206 0.794 32 H 0.272 0.728 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.031 0.969 40 H 0.030 0.970 41 H 0.075 0.925 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.034 -36.474 -10.590 38.194 hybrid contribution -0.310 1.179 0.335 1.264 sum -4.344 -35.296 -10.255 37.011 Atomic orbital electron populations 1.23629 0.74137 1.06210 1.02493 1.86503 1.25238 1.30797 1.83777 1.21296 0.89389 0.81698 0.72028 1.90884 1.67573 1.37479 1.47075 1.19039 0.89262 0.94837 1.10545 1.21612 0.92702 0.98372 0.92324 1.21398 0.95029 0.96748 1.01842 1.17910 0.77000 0.93394 1.02692 1.91540 1.28195 1.97150 1.93492 1.17627 0.91352 0.85513 1.05796 1.43421 1.27709 1.07621 1.52366 1.21547 0.85709 0.86285 0.75989 1.90740 1.22500 1.83409 1.46689 1.21716 1.00393 0.89581 1.04924 1.21311 0.98444 0.94107 0.99920 1.21331 0.98465 0.93303 1.00001 1.19585 0.96047 0.93982 0.95938 1.21539 1.05121 0.96908 1.33155 0.94332 1.25984 1.01691 0.94814 0.96831 1.70057 1.40797 1.03791 1.44416 0.85708 0.79922 0.77854 0.79481 1.19223 1.20737 1.17763 1.21151 0.92881 0.98307 0.95218 0.91963 0.83981 0.92353 0.80094 0.79413 0.72825 0.85743 0.85696 0.92919 0.92824 0.92194 0.92246 0.96906 0.96955 0.92523 0.85070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.51 16 2 O -0.35 -5.55 9.81 -56.33 -0.55 -6.10 16 3 C 0.51 11.56 7.89 70.30 0.55 12.12 16 4 O -0.54 -16.71 16.13 19.88 0.32 -16.39 16 5 C -0.13 -2.64 5.87 -20.11 -0.12 -2.76 16 6 C -0.03 -0.34 9.61 22.54 0.22 -0.12 16 7 C -0.13 -1.18 10.00 22.25 0.22 -0.96 16 8 C 0.11 1.61 7.32 22.58 0.17 1.77 16 9 F -0.13 -1.73 16.94 44.97 0.76 -0.97 16 10 C 0.09 1.83 6.31 38.12 0.24 2.07 16 11 N -0.66 -12.19 5.22 -303.43 -1.59 -13.78 16 12 C 0.51 12.76 7.67 87.66 0.67 13.43 16 13 O -0.56 -19.04 13.40 -3.06 -0.04 -19.08 16 14 C -0.13 -2.74 5.70 29.85 0.17 -2.57 16 15 C -0.10 -3.17 4.50 30.60 0.14 -3.03 16 16 C -0.09 -3.54 5.15 30.60 0.16 -3.38 16 17 C -0.02 -0.88 4.04 29.85 0.12 -0.76 16 18 C -0.53 -31.29 9.66 25.60 0.25 -31.05 16 19 H 0.04 2.45 7.99 -2.91 -0.02 2.43 16 20 C 0.00 0.21 5.47 84.65 0.46 0.67 16 21 N -0.95 -60.78 13.96 21.45 0.30 -60.48 16 22 Si 0.95 46.51 27.47 68.60 1.88 48.39 16 23 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 25 H -0.25 -11.93 6.54 99.48 0.65 -11.28 16 26 C -0.05 -1.33 8.24 22.66 0.19 -1.14 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.14 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.18 0.83 7.60 -2.91 -0.02 0.80 16 31 H 0.19 0.32 8.06 -2.91 -0.02 0.30 16 32 H 0.43 4.87 8.66 -92.71 -0.80 4.07 16 33 H 0.12 2.10 8.14 -2.38 -0.02 2.08 16 34 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 36 H 0.05 1.82 8.10 -2.39 -0.02 1.81 16 37 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.01 0.62 7.20 -2.39 -0.02 0.61 16 40 H 0.01 0.59 7.57 -2.39 -0.02 0.57 16 41 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 42 H 0.13 4.14 5.78 -2.91 -0.02 4.13 16 Total: -1.00 -82.49 366.04 5.92 -76.57 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: 0.20 Total: 6.03 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: 4.64 Total: -14.20 kcal Atomic # 7 Polarization: -72.97 SS G_CDS: -1.29 Total: -74.26 kcal Atomic # 8 Polarization: -41.29 SS G_CDS: -0.27 Total: -41.57 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.76 Total: -0.97 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 1.88 Total: 48.39 kcal Total: -82.49 5.92 -76.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588840134.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.188 kcal (2) G-P(sol) polarization free energy of solvation -82.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds