Wall clock time and date at job start Tue Mar 31 2020 14:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36000 * 117.00175 * 2 1 4 4 C 1.38491 * 120.08678 * 0.25551 * 3 2 1 5 5 C 1.38298 * 120.02620 * 180.22708 * 4 3 2 6 6 C 1.50696 * 119.90505 * 179.76689 * 5 4 3 7 7 N 1.46900 * 109.47010 * 269.72799 * 6 5 4 8 8 C 1.47906 * 111.00463 * 69.87265 * 7 6 5 9 9 C 1.53996 * 107.06117 * 214.15679 * 8 7 6 10 10 C 1.54591 * 105.13656 * 1.22236 * 9 8 7 11 11 O 1.42897 * 110.72580 * 263.42033 * 10 9 8 12 12 C 1.50705 * 110.72181 * 140.31766 * 10 9 8 13 13 H 1.08006 * 119.99788 * 241.44836 * 12 10 9 14 14 C 1.37876 * 120.00126 * 61.45398 * 12 10 9 15 15 N 1.31516 * 119.99773 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 120.00069 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47288 * 89.99644 * 16 14 12 18 18 H 1.48504 * 109.47070 * 209.99844 * 16 14 12 19 19 H 1.48501 * 109.47173 * 329.99601 * 16 14 12 20 20 C 1.48534 * 111.00336 * 312.47554 * 7 6 5 21 21 C 1.38269 * 120.19208 * 359.49316 * 5 4 3 22 22 C 1.38204 * 120.16309 * 0.27281 * 21 5 4 23 23 C 1.38788 * 119.97532 * 359.97438 * 22 21 5 24 24 S 1.76201 * 120.09779 * 180.02562 * 23 22 21 25 25 C 1.81403 * 102.99967 * 359.97438 * 24 23 22 26 26 H 1.08997 * 109.47572 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46849 * 300.00221 * 1 2 3 28 28 H 1.09006 * 109.46647 * 59.99672 * 1 2 3 29 29 H 1.08000 * 119.98441 * 359.97438 * 4 3 2 30 30 H 1.08993 * 109.47221 * 149.72809 * 6 5 4 31 31 H 1.08998 * 109.46962 * 29.72261 * 6 5 4 32 32 H 1.09003 * 109.91125 * 333.50977 * 8 7 6 33 33 H 1.08999 * 109.91852 * 94.80110 * 8 7 6 34 34 H 1.08993 * 110.30544 * 120.13627 * 9 8 7 35 35 H 1.08995 * 110.30651 * 242.21227 * 9 8 7 36 36 H 0.96704 * 114.00375 * 298.54612 * 11 10 9 37 37 H 0.97002 * 119.99762 * 180.02562 * 15 14 12 38 38 H 1.09004 * 110.66939 * 278.16097 * 20 7 6 39 39 H 1.09002 * 110.66619 * 41.28493 * 20 7 6 40 40 H 1.07992 * 119.91979 * 180.25024 * 21 5 4 41 41 H 1.08001 * 120.01227 * 179.97438 * 22 21 5 42 42 H 1.09002 * 109.47122 * 59.99436 * 25 24 23 43 43 H 1.08997 * 109.47687 * 179.97438 * 25 24 23 44 44 H 1.09000 * 109.46875 * 300.00143 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2940 2.3744 0.0053 5 6 1.9232 3.6060 0.0006 6 6 1.1017 4.8693 0.0011 7 7 0.8352 5.2807 -1.3837 8 6 -0.1036 4.3469 -2.0428 9 6 0.3072 4.2642 -3.5246 10 6 1.5470 5.1788 -3.6515 11 8 1.1726 6.4763 -4.1186 12 6 2.5741 4.5611 -4.5652 13 1 3.5548 4.3139 -4.1864 14 6 2.2617 4.3117 -5.8848 15 7 1.0673 4.6124 -6.3459 16 14 3.5345 3.5454 -7.0171 17 1 3.4144 2.0662 -6.9677 18 1 3.3063 4.0144 -8.4075 19 1 4.8947 3.9467 -6.5764 20 6 2.0774 5.2473 -2.1974 21 6 3.3038 3.6815 0.0011 22 6 4.0625 2.5263 0.0006 23 6 3.4382 1.2867 0.0002 24 16 4.4023 -0.1881 0.0003 25 6 6.1051 0.4374 0.0002 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 0.2154 2.3192 0.0091 30 1 1.6496 5.6587 0.5155 31 1 0.1574 4.6884 0.5145 32 1 -0.0320 3.3617 -1.5820 33 1 -1.1226 4.7251 -1.9605 34 1 0.5649 3.2387 -3.7890 35 1 -0.4993 4.6272 -4.1616 36 1 0.7643 6.4761 -4.9953 37 1 0.8475 4.4366 -7.2742 38 1 2.6625 6.1540 -2.0436 39 1 2.6683 4.3623 -1.9613 40 1 3.7905 4.6455 0.0014 41 1 5.1407 2.5881 0.0006 42 1 6.2689 1.0452 0.8901 43 1 6.8005 -0.4018 0.0007 44 1 6.2688 1.0450 -0.8898 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592150722.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:25 Heat of formation + Delta-G solvation = -46.839385 kcal Electronic energy + Delta-G solvation = -26339.042879 eV Core-core repulsion = 22769.244297 eV Total energy + Delta-G solvation = -3569.798582 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.134 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.33465 -38.65999 -37.09666 -34.82690 -32.08629 -31.89499 -30.44273 -29.32797 -28.96893 -27.98225 -27.17787 -25.67211 -23.99656 -22.14478 -21.69111 -20.02652 -19.43005 -18.02962 -17.07024 -16.95440 -16.14643 -15.77913 -15.21903 -15.02169 -14.93732 -14.62896 -14.40354 -14.05685 -13.86651 -13.80612 -13.48592 -13.18231 -12.80802 -12.59716 -12.29693 -12.13987 -11.94230 -11.70431 -11.57983 -11.28574 -11.08474 -10.99638 -10.92086 -10.75261 -10.62872 -10.43318 -10.31747 -10.16493 -9.77633 -9.46532 -9.11666 -8.56095 -8.38118 -8.07577 -7.72988 -7.14834 -6.17748 -4.25131 1.22965 1.49131 1.56661 2.47822 3.23772 3.26431 3.30771 3.34304 3.71537 4.32177 4.69518 4.76753 4.92231 4.96856 4.99749 5.08099 5.11109 5.14427 5.17355 5.30315 5.45576 5.46047 5.58854 5.59682 5.75240 5.78851 5.92935 6.05268 6.07987 6.17490 6.21922 6.29244 6.51074 6.61157 6.67246 6.75848 6.91923 7.07985 7.34340 7.41950 7.53811 7.56665 7.68597 7.85272 8.22467 8.76927 9.43406 9.58514 10.89360 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.010991 B = 0.005008 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.937172 B = 5589.370892 C = 6627.871317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.309 6.309 3 C 0.145 3.855 4 C -0.178 4.178 5 C -0.073 4.073 6 C 0.080 3.920 7 N -0.501 5.501 8 C 0.027 3.973 9 C -0.126 4.126 10 C 0.257 3.743 11 O -0.581 6.581 12 C -0.533 4.533 13 H 0.058 0.942 14 C 0.072 3.928 15 N -0.895 5.895 16 Si 0.895 3.105 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.273 1.273 20 C 0.042 3.958 21 C -0.120 4.120 22 C -0.095 4.095 23 C -0.121 4.121 24 S -0.102 6.102 25 C -0.151 4.151 26 H 0.099 0.901 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.131 0.869 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.036 0.964 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.376 0.624 37 H 0.266 0.734 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.081 0.919 43 H 0.105 0.895 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.934 -7.277 14.212 16.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.095 3.905 4 C -0.199 4.199 5 C -0.077 4.077 6 C -0.049 4.049 7 N -0.222 5.222 8 C -0.101 4.101 9 C -0.165 4.165 10 C 0.217 3.783 11 O -0.389 6.389 12 C -0.572 4.572 13 H 0.077 0.923 14 C -0.131 4.131 15 N -0.534 5.534 16 Si 0.723 3.277 17 H -0.206 1.206 18 H -0.210 1.210 19 H -0.198 1.198 20 C -0.085 4.085 21 C -0.140 4.140 22 C -0.119 4.119 23 C -0.234 4.234 24 S 0.139 5.861 25 C -0.320 4.320 26 H 0.118 0.882 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.149 0.851 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.226 0.774 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.146 0.854 41 H 0.146 0.854 42 H 0.100 0.900 43 H 0.123 0.877 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.672 -7.961 14.656 16.763 hybrid contribution 0.850 -0.063 -1.378 1.620 sum 2.522 -8.024 13.278 15.718 Atomic orbital electron populations 1.23072 0.78358 1.03887 1.01516 1.86107 1.21272 1.26318 1.88553 1.18287 0.90129 0.84660 0.97419 1.21051 0.99666 0.91375 1.07855 1.20518 0.94616 0.95848 0.96727 1.21454 0.98149 0.91858 0.93419 1.65190 1.11341 1.45642 1.00038 1.23048 0.96355 0.93668 0.97015 1.22887 1.00549 1.01374 0.91729 1.19312 0.89868 0.80643 0.88469 1.86138 1.83151 1.30908 1.38687 1.21582 0.99576 1.40895 0.95132 0.92327 1.24973 0.95385 0.94678 0.98029 1.69734 1.19601 1.48187 1.15926 0.86541 0.81875 0.79427 0.79888 1.20561 1.21022 1.19792 1.23451 0.90976 1.00368 0.93677 1.20873 0.93182 0.98077 1.01901 1.20928 0.99581 0.90703 1.00668 1.20845 0.93405 0.97224 1.11915 1.85507 0.99235 1.08287 1.93049 1.23699 0.96762 1.05933 1.05596 0.88232 0.92746 0.92340 0.85098 0.89949 0.90620 0.94625 0.91986 0.92342 0.91652 0.77447 0.92445 0.91244 0.92023 0.85439 0.85386 0.90000 0.87650 0.89675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.31 -4.58 9.87 -19.74 -0.19 -4.78 16 3 C 0.15 2.29 6.69 -39.07 -0.26 2.03 16 4 C -0.18 -2.69 7.17 -39.47 -0.28 -2.97 16 5 C -0.07 -1.12 3.96 -104.59 -0.41 -1.53 16 6 C 0.08 1.21 5.69 -4.98 -0.03 1.18 16 7 N -0.50 -9.61 5.54 -231.89 -1.28 -10.90 16 8 C 0.03 0.52 6.46 -2.75 -0.02 0.50 16 9 C -0.13 -2.97 5.26 -25.38 -0.13 -3.10 16 10 C 0.26 6.46 0.95 -89.91 -0.09 6.38 16 11 O -0.58 -15.47 13.10 -35.23 -0.46 -15.93 16 12 C -0.53 -14.49 8.14 -34.44 -0.28 -14.77 16 13 H 0.06 1.60 7.78 -52.48 -0.41 1.19 16 14 C 0.07 1.92 5.28 -17.82 -0.09 1.83 16 15 N -0.89 -24.21 11.00 55.43 0.61 -23.60 16 16 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 C 0.04 0.92 5.20 -1.90 -0.01 0.91 16 21 C -0.12 -1.78 7.47 -39.58 -0.30 -2.07 16 22 C -0.10 -1.37 9.36 -39.39 -0.37 -1.74 16 23 C -0.12 -1.87 6.12 -38.96 -0.24 -2.11 16 24 S -0.10 -1.39 22.05 -107.50 -2.37 -3.76 16 25 C -0.15 -1.47 9.15 101.05 0.92 -0.55 16 26 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.50 7.65 -51.93 -0.40 0.10 16 28 H 0.06 0.64 7.67 -51.93 -0.40 0.25 16 29 H 0.13 1.75 5.42 -52.49 -0.28 1.47 16 30 H 0.08 1.14 8.08 -51.93 -0.42 0.72 16 31 H 0.08 1.02 8.02 -51.93 -0.42 0.60 16 32 H 0.04 0.64 4.88 -51.93 -0.25 0.38 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.06 1.46 7.84 -51.93 -0.41 1.05 16 35 H 0.06 1.61 7.99 -51.93 -0.41 1.19 16 36 H 0.38 10.10 7.46 45.56 0.34 10.44 16 37 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 38 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 39 H 0.06 1.32 4.75 -51.93 -0.25 1.07 16 40 H 0.13 1.73 8.05 -52.49 -0.42 1.30 16 41 H 0.13 1.53 5.88 -52.49 -0.31 1.22 16 42 H 0.08 0.70 7.75 -51.92 -0.40 0.29 16 43 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.08 0.84 7.75 -51.92 -0.40 0.44 16 LS Contribution 356.97 15.07 5.38 5.38 Total: -1.00 -30.14 356.97 -9.60 -39.75 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -5.67 Total: 12.53 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: -0.59 Total: -14.74 kcal Atomic # 7 Polarization: -33.82 SS G_CDS: -0.67 Total: -34.49 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.66 Total: -20.71 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -1.39 SS G_CDS: -2.37 Total: -3.76 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.14 -9.60 -39.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150722.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.093 kcal (2) G-P(sol) polarization free energy of solvation -30.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds