Wall clock time and date at job start Tue Mar 31 2020 13:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42897 * 109.47277 * 2 1 4 4 C 1.42897 * 114.00250 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.47254 * 180.02562 * 4 3 2 6 6 O 1.21284 * 119.99959 * 359.97438 * 5 4 3 7 7 N 1.34767 * 120.00234 * 179.97438 * 5 4 3 8 8 N 1.40097 * 120.00320 * 179.97438 * 7 5 4 9 9 C 1.34776 * 120.00487 * 180.02562 * 8 7 5 10 10 O 1.21587 * 120.00243 * 180.02562 * 9 8 7 11 11 N 1.34784 * 119.99573 * 0.02562 * 9 8 7 12 12 C 1.39945 * 119.99451 * 174.71201 * 11 9 8 13 13 C 1.38953 * 120.03814 * 326.35111 * 12 11 9 14 14 C 1.38165 * 120.06801 * 180.02562 * 13 12 11 15 15 C 1.38169 * 120.13335 * 359.75043 * 14 13 12 16 16 C 1.38910 * 120.07242 * 0.50364 * 15 14 13 17 17 O 1.35747 * 120.03085 * 179.77096 * 16 15 14 18 18 C 1.34838 * 116.99839 * 173.82685 * 17 16 15 19 19 H 1.07997 * 119.99706 * 354.59457 * 18 17 16 20 20 C 1.38647 * 120.00051 * 174.59218 * 18 17 16 21 21 N 1.31563 * 120.00375 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99800 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47536 * 60.00340 * 22 20 18 24 24 H 1.48500 * 109.47148 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47072 * 300.00017 * 22 20 18 26 26 C 1.38714 * 120.03153 * 146.37865 * 12 11 9 27 27 H 1.08998 * 109.47193 * 60.00057 * 1 2 3 28 28 H 1.09005 * 109.46835 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47079 * 299.99842 * 1 2 3 30 30 H 1.09000 * 109.47079 * 240.00158 * 2 1 3 31 31 H 1.09002 * 109.47441 * 120.00376 * 2 1 3 32 32 H 1.09000 * 109.47399 * 59.99956 * 4 3 2 33 33 H 1.08998 * 109.46918 * 299.99708 * 4 3 2 34 34 H 0.97002 * 120.00032 * 0.02562 * 7 5 4 35 35 H 0.97001 * 120.00223 * 0.02562 * 8 7 5 36 36 H 0.96999 * 120.00121 * 354.71897 * 11 9 8 37 37 H 1.08001 * 119.96944 * 0.02562 * 13 12 11 38 38 H 1.07995 * 119.93625 * 180.02562 * 14 13 12 39 39 H 1.08006 * 119.96495 * 180.27876 * 15 14 13 40 40 H 0.96990 * 119.99890 * 180.02562 * 21 20 18 41 41 H 1.07996 * 120.06726 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8195 2.9161 0.0001 6 8 2.9610 3.7729 0.0005 7 7 5.1209 3.2663 0.0002 8 7 5.4821 4.6199 0.0003 9 6 6.7836 4.9701 0.0000 10 8 7.0971 6.1449 0.0005 11 7 7.7376 4.0180 -0.0011 12 6 9.0853 4.3781 -0.1132 13 6 9.4497 5.4794 -0.8780 14 6 10.7801 5.8352 -0.9895 15 6 11.7515 5.1006 -0.3372 16 6 11.3942 3.9954 0.4247 17 8 12.3498 3.2715 1.0615 18 6 11.9276 2.2912 1.8855 19 1 10.8729 2.1681 2.0822 20 6 12.8476 1.4412 2.4801 21 7 14.1325 1.5914 2.2408 22 14 12.2627 0.0836 3.6221 23 1 11.3565 -0.8304 2.8813 24 1 13.4335 -0.6793 4.1244 25 1 11.5332 0.6817 4.7690 26 6 10.0588 3.6355 0.5387 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8333 0.9767 -0.8908 33 1 3.8340 0.9765 0.8892 34 1 5.8075 2.5811 -0.0005 35 1 4.7956 5.3051 0.0007 36 1 7.4900 3.0833 0.0758 37 1 8.6922 6.0580 -1.3859 38 1 11.0608 6.6918 -1.5842 39 1 12.7903 5.3838 -0.4226 40 1 14.7760 0.9966 2.6565 41 1 9.7781 2.7791 1.1338 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755932286.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:28 Heat of formation + Delta-G solvation = -60.192715 kcal Electronic energy + Delta-G solvation = -26021.652801 eV Core-core repulsion = 21904.981960 eV Total energy + Delta-G solvation = -4116.670840 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.00104 -39.94628 -38.83036 -38.11872 -36.63835 -35.93279 -34.27433 -32.35966 -32.26060 -31.36997 -29.38504 -28.55710 -27.64479 -25.38146 -23.28450 -22.96461 -22.03564 -21.69786 -20.59698 -19.46311 -18.30478 -17.90532 -17.44652 -17.01583 -17.00742 -16.42996 -15.86821 -15.46966 -15.18626 -15.12688 -14.91829 -14.74939 -14.23903 -14.07963 -13.66539 -13.59044 -13.42206 -13.05526 -12.89461 -12.48296 -12.01916 -11.88744 -11.76738 -11.71263 -11.58936 -11.27132 -11.10108 -10.82800 -10.58742 -10.51549 -10.26238 -10.23671 -9.83366 -9.56834 -8.86950 -8.73340 -7.82415 -7.22740 -6.50495 -4.10680 1.31748 1.90396 2.05093 2.32568 2.72773 3.02450 3.06080 3.09538 3.11005 3.20170 3.89943 3.94217 4.48323 4.52212 4.52348 4.61756 4.64699 4.73882 4.87820 5.04572 5.19495 5.21409 5.44550 5.57522 5.68121 5.90784 5.92451 5.99441 6.03890 6.12974 6.32446 6.52657 6.61119 6.87869 6.93560 6.97826 7.07332 7.25919 7.35274 7.45296 7.72812 7.90850 7.93783 8.30795 8.94421 9.64539 10.67350 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010521 B = 0.002807 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.704654 B = 9974.111767 C =12349.356947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.364 6.364 4 C 0.055 3.945 5 C 0.516 3.484 6 O -0.511 6.511 7 N -0.529 5.529 8 N -0.529 5.529 9 C 0.713 3.287 10 O -0.547 6.547 11 N -0.678 5.678 12 C 0.193 3.807 13 C -0.204 4.204 14 C -0.061 4.061 15 C -0.198 4.198 16 C 0.169 3.831 17 O -0.175 6.175 18 C -0.393 4.393 19 H 0.089 0.911 20 C 0.040 3.960 21 N -0.861 5.861 22 Si 0.940 3.060 23 H -0.271 1.271 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.256 4.256 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.422 0.578 35 H 0.444 0.556 36 H 0.397 0.603 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.271 0.729 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.310 -5.811 -5.022 21.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.283 6.283 4 C -0.027 4.027 5 C 0.301 3.699 6 O -0.383 6.383 7 N -0.283 5.283 8 N -0.288 5.288 9 C 0.413 3.587 10 O -0.418 6.418 11 N -0.327 5.327 12 C 0.100 3.900 13 C -0.225 4.225 14 C -0.080 4.080 15 C -0.218 4.218 16 C 0.115 3.885 17 O -0.078 6.078 18 C -0.469 4.469 19 H 0.107 0.893 20 C -0.165 4.165 21 N -0.495 5.495 22 Si 0.765 3.235 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.278 4.278 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.263 0.737 35 H 0.290 0.710 36 H 0.232 0.768 37 H 0.138 0.862 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.081 0.919 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -20.271 -4.338 -4.952 21.313 hybrid contribution -0.239 -1.623 0.700 1.783 sum -20.510 -5.961 -4.253 21.778 Atomic orbital electron populations 1.21741 0.93193 1.02439 1.03550 1.22599 0.96117 0.82781 1.00565 1.88013 1.17749 1.26972 1.95523 1.21987 0.84793 0.92253 1.03624 1.20458 0.80729 0.91575 0.77126 1.90785 1.48533 1.51405 1.47606 1.44735 1.07933 0.97872 1.77758 1.44643 1.06415 0.96099 1.81646 1.15676 0.79230 0.85453 0.78371 1.91075 1.77885 1.15931 1.56935 1.42562 1.05076 1.08572 1.76484 1.17153 0.79993 0.96573 0.96326 1.20568 0.96328 1.00515 1.05129 1.20540 0.91889 0.97968 0.97636 1.20277 0.99794 0.97384 1.04354 1.19058 0.87739 0.91012 0.90728 1.84028 1.30272 1.42057 1.51435 1.21202 0.94067 1.09053 1.22616 0.89338 1.25277 0.94886 0.98166 0.98128 1.70021 1.00651 1.37259 1.41614 0.85801 0.78298 0.79744 0.79668 1.19599 1.20248 1.19542 1.20753 0.92468 1.05988 1.08553 0.91630 0.90773 0.91609 0.92846 0.92820 0.89331 0.89301 0.73703 0.70976 0.76820 0.86150 0.86459 0.86272 0.91906 0.85238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 10.28 37.16 0.38 -0.42 16 2 C 0.06 0.31 6.66 37.16 0.25 0.56 16 3 O -0.36 -3.25 9.88 -55.14 -0.54 -3.80 16 4 C 0.05 0.33 6.42 36.01 0.23 0.56 16 5 C 0.52 4.88 8.02 -10.99 -0.09 4.79 16 6 O -0.51 -7.18 16.34 -14.35 -0.23 -7.41 16 7 N -0.53 -4.37 6.25 31.22 0.20 -4.18 16 8 N -0.53 -6.06 6.26 27.64 0.17 -5.88 16 9 C 0.71 10.35 8.41 -86.91 -0.73 9.62 16 10 O -0.55 -10.06 14.88 5.29 0.08 -9.99 16 11 N -0.68 -9.37 5.30 -14.24 -0.08 -9.44 16 12 C 0.19 3.47 6.27 -83.71 -0.52 2.95 16 13 C -0.20 -3.77 8.65 -39.34 -0.34 -4.11 16 14 C -0.06 -1.12 10.03 -39.63 -0.40 -1.51 16 15 C -0.20 -4.10 9.99 -39.36 -0.39 -4.49 16 16 C 0.17 3.93 6.64 -39.14 -0.26 3.67 16 17 O -0.17 -4.80 9.76 0.03 0.00 -4.79 16 18 C -0.39 -10.47 9.44 30.88 0.29 -10.18 16 19 H 0.09 2.14 5.30 -52.49 -0.28 1.86 16 20 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 21 N -0.86 -24.47 13.67 55.48 0.76 -23.71 16 22 Si 0.94 19.48 29.55 -169.99 -5.02 14.46 16 23 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 24 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 25 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 26 C -0.26 -5.21 9.04 -39.21 -0.35 -5.56 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.42 2.18 6.72 -182.60 -1.23 0.95 16 35 H 0.44 5.24 8.10 -182.60 -1.48 3.76 16 36 H 0.40 3.94 6.76 -40.82 -0.28 3.67 16 37 H 0.12 2.19 6.43 -52.49 -0.34 1.85 16 38 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 39 H 0.12 2.35 8.06 -52.48 -0.42 1.93 16 40 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.13 2.54 5.71 -52.49 -0.30 2.24 16 LS Contribution 359.00 15.07 5.41 5.41 Total: -1.00 -36.16 359.00 -8.13 -44.30 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -6.84 Total: 8.21 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -2.03 Total: -3.17 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 1.05 Total: -43.22 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.70 Total: -25.99 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.46 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.16 -8.13 -44.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755932286.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.896 kcal (2) G-P(sol) polarization free energy of solvation -36.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds