Wall clock time and date at job start Tue Mar 31 2020 13:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42897 * 109.47277 * 2 1 4 4 C 1.42897 * 114.00250 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.47254 * 180.02562 * 4 3 2 6 6 O 1.21284 * 119.99959 * 359.97438 * 5 4 3 7 7 N 1.34767 * 120.00234 * 179.97438 * 5 4 3 8 8 N 1.40097 * 120.00320 * 179.97438 * 7 5 4 9 9 C 1.34776 * 120.00487 * 180.02562 * 8 7 5 10 10 O 1.21587 * 120.00243 * 180.02562 * 9 8 7 11 11 N 1.34784 * 119.99573 * 0.02562 * 9 8 7 12 12 C 1.39945 * 119.99451 * 174.71201 * 11 9 8 13 13 C 1.38953 * 120.03814 * 326.35111 * 12 11 9 14 14 C 1.38165 * 120.06801 * 180.02562 * 13 12 11 15 15 C 1.38169 * 120.13335 * 359.75043 * 14 13 12 16 16 C 1.38910 * 120.07242 * 0.50364 * 15 14 13 17 17 O 1.35747 * 120.03085 * 179.77096 * 16 15 14 18 18 C 1.34838 * 116.99839 * 173.82685 * 17 16 15 19 19 H 1.07997 * 119.99706 * 354.59457 * 18 17 16 20 20 C 1.38647 * 120.00051 * 174.59218 * 18 17 16 21 21 N 1.31563 * 120.00375 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99800 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47536 * 60.00340 * 22 20 18 24 24 H 1.48500 * 109.47148 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47072 * 300.00017 * 22 20 18 26 26 C 1.38714 * 120.03153 * 146.37865 * 12 11 9 27 27 H 1.08998 * 109.47193 * 60.00057 * 1 2 3 28 28 H 1.09005 * 109.46835 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47079 * 299.99842 * 1 2 3 30 30 H 1.09000 * 109.47079 * 240.00158 * 2 1 3 31 31 H 1.09002 * 109.47441 * 120.00376 * 2 1 3 32 32 H 1.09000 * 109.47399 * 59.99956 * 4 3 2 33 33 H 1.08998 * 109.46918 * 299.99708 * 4 3 2 34 34 H 0.97002 * 120.00032 * 0.02562 * 7 5 4 35 35 H 0.97001 * 120.00223 * 0.02562 * 8 7 5 36 36 H 0.96999 * 120.00121 * 354.71897 * 11 9 8 37 37 H 1.08001 * 119.96944 * 0.02562 * 13 12 11 38 38 H 1.07995 * 119.93625 * 180.02562 * 14 13 12 39 39 H 1.08006 * 119.96495 * 180.27876 * 15 14 13 40 40 H 0.96990 * 119.99890 * 180.02562 * 21 20 18 41 41 H 1.07996 * 120.06726 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8195 2.9161 0.0001 6 8 2.9610 3.7729 0.0005 7 7 5.1209 3.2663 0.0002 8 7 5.4821 4.6199 0.0003 9 6 6.7836 4.9701 0.0000 10 8 7.0971 6.1449 0.0005 11 7 7.7376 4.0180 -0.0011 12 6 9.0853 4.3781 -0.1132 13 6 9.4497 5.4794 -0.8780 14 6 10.7801 5.8352 -0.9895 15 6 11.7515 5.1006 -0.3372 16 6 11.3942 3.9954 0.4247 17 8 12.3498 3.2715 1.0615 18 6 11.9276 2.2912 1.8855 19 1 10.8729 2.1681 2.0822 20 6 12.8476 1.4412 2.4801 21 7 14.1325 1.5914 2.2408 22 14 12.2627 0.0836 3.6221 23 1 11.3565 -0.8304 2.8813 24 1 13.4335 -0.6793 4.1244 25 1 11.5332 0.6817 4.7690 26 6 10.0588 3.6355 0.5387 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8333 0.9767 -0.8908 33 1 3.8340 0.9765 0.8892 34 1 5.8075 2.5811 -0.0005 35 1 4.7956 5.3051 0.0007 36 1 7.4900 3.0833 0.0758 37 1 8.6922 6.0580 -1.3859 38 1 11.0608 6.6918 -1.5842 39 1 12.7903 5.3838 -0.4226 40 1 14.7760 0.9966 2.6565 41 1 9.7781 2.7791 1.1338 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755932286.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:27 Heat of formation + Delta-G solvation = -87.582885 kcal Electronic energy + Delta-G solvation = -26022.840527 eV Core-core repulsion = 21904.981960 eV Total energy + Delta-G solvation = -4117.858567 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.11375 -40.97277 -40.34335 -38.74224 -38.20644 -36.96181 -35.64427 -34.19350 -32.99414 -32.04394 -30.92854 -30.08912 -28.26951 -27.27388 -24.27738 -23.67267 -23.54542 -22.58093 -21.94098 -20.66086 -19.63615 -19.33154 -18.71269 -17.58744 -17.54843 -17.48344 -17.01455 -16.83037 -16.59583 -16.27909 -16.01463 -15.75585 -15.74657 -15.53654 -15.39744 -14.57244 -14.23525 -14.10416 -13.99242 -13.55993 -13.32358 -13.23952 -12.86220 -12.72396 -12.61312 -12.39112 -12.29555 -12.18987 -12.12333 -11.82162 -11.38850 -11.30782 -11.16577 -10.70698 -10.65639 -9.71198 -9.32309 -8.86469 -8.42742 -6.11683 0.38071 0.53260 0.72367 1.25746 1.39350 1.49812 1.55742 1.64021 1.84773 2.21190 2.65359 2.86206 3.19799 3.33799 3.51758 3.78334 4.12474 4.19336 4.19733 4.30686 4.33986 4.37379 4.44167 4.55276 4.60943 4.64983 4.84196 4.99635 5.05955 5.12259 5.13704 5.18708 5.29408 5.40087 5.62716 5.67299 5.69984 6.00295 6.04343 6.17969 6.22137 6.46310 7.00690 7.01798 7.19371 7.81071 8.79945 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010521 B = 0.002807 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.704654 B = 9974.111767 C =12349.356947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.051 3.949 3 O -0.403 6.403 4 C 0.056 3.944 5 C 0.516 3.484 6 O -0.562 6.562 7 N -0.514 5.514 8 N -0.522 5.522 9 C 0.717 3.283 10 O -0.587 6.587 11 N -0.665 5.665 12 C 0.202 3.798 13 C -0.199 4.199 14 C -0.051 4.051 15 C -0.212 4.212 16 C 0.135 3.865 17 O -0.226 6.226 18 C -0.412 4.412 19 H 0.106 0.894 20 C -0.023 4.023 21 N -0.920 5.920 22 Si 1.018 2.982 23 H -0.249 1.249 24 H -0.278 1.278 25 H -0.261 1.261 26 C -0.254 4.254 27 H 0.053 0.947 28 H 0.094 0.906 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.438 0.562 35 H 0.444 0.556 36 H 0.417 0.583 37 H 0.130 0.870 38 H 0.153 0.847 39 H 0.119 0.881 40 H 0.272 0.728 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.553 -7.436 -5.229 24.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.025 4.025 3 O -0.322 6.322 4 C -0.025 4.025 5 C 0.304 3.696 6 O -0.438 6.438 7 N -0.270 5.270 8 N -0.278 5.278 9 C 0.417 3.583 10 O -0.462 6.462 11 N -0.315 5.315 12 C 0.107 3.893 13 C -0.220 4.220 14 C -0.070 4.070 15 C -0.232 4.232 16 C 0.084 3.916 17 O -0.132 6.132 18 C -0.488 4.488 19 H 0.123 0.877 20 C -0.221 4.221 21 N -0.558 5.558 22 Si 0.837 3.163 23 H -0.173 1.173 24 H -0.203 1.203 25 H -0.185 1.185 26 C -0.276 4.276 27 H 0.072 0.928 28 H 0.113 0.887 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.283 0.717 35 H 0.291 0.709 36 H 0.256 0.744 37 H 0.148 0.852 38 H 0.171 0.829 39 H 0.137 0.863 40 H 0.081 0.919 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -22.575 -5.998 -5.190 23.928 hybrid contribution 0.245 -0.945 0.600 1.146 sum -22.330 -6.943 -4.590 23.830 Atomic orbital electron populations 1.21794 0.93641 1.03400 1.02371 1.22784 0.95900 0.81656 1.02140 1.87964 1.19357 1.29005 1.95909 1.22232 0.83984 0.89503 1.06768 1.21287 0.80091 0.92810 0.75436 1.90772 1.49942 1.53063 1.50006 1.44793 1.08465 0.96500 1.77277 1.44389 1.05263 0.97971 1.80165 1.15613 0.79862 0.84797 0.78069 1.91049 1.78905 1.17595 1.58619 1.42287 1.03404 1.09756 1.76084 1.17102 0.81380 0.95764 0.95038 1.20879 0.96657 1.00204 1.04292 1.20902 0.91225 0.98173 0.96657 1.20497 1.00636 0.97336 1.04732 1.19568 0.88609 0.91701 0.91729 1.83999 1.32282 1.43589 1.53329 1.21769 0.95088 1.09017 1.22889 0.87695 1.26597 0.94836 1.00808 0.99826 1.70184 1.02321 1.39221 1.44110 0.84657 0.78026 0.76260 0.77354 1.17266 1.20288 1.18502 1.20787 0.91833 1.06400 1.08573 0.92762 0.88749 0.92840 0.91119 0.91241 0.85882 0.86050 0.71703 0.70949 0.74402 0.85191 0.82941 0.86327 0.91922 0.84658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.28 71.98 0.74 -0.69 16 2 C 0.05 0.44 6.66 71.98 0.48 0.92 16 3 O -0.40 -6.34 9.88 -129.94 -1.28 -7.62 16 4 C 0.06 0.48 6.42 71.24 0.46 0.94 16 5 C 0.52 8.55 8.02 87.66 0.70 9.25 16 6 O -0.56 -15.30 16.34 15.99 0.26 -15.04 16 7 N -0.51 -6.99 6.25 -173.54 -1.09 -8.07 16 8 N -0.52 -10.85 6.26 -184.74 -1.16 -12.01 16 9 C 0.72 19.21 8.41 179.05 1.51 20.72 16 10 O -0.59 -20.65 14.88 -3.99 -0.06 -20.71 16 11 N -0.66 -16.54 5.30 -317.22 -1.68 -18.22 16 12 C 0.20 6.87 6.27 38.13 0.24 7.11 16 13 C -0.20 -6.91 8.65 22.42 0.19 -6.72 16 14 C -0.05 -1.76 10.03 22.24 0.22 -1.54 16 15 C -0.21 -8.79 9.99 22.41 0.22 -8.56 16 16 C 0.14 6.39 6.64 22.56 0.15 6.54 16 17 O -0.23 -12.89 9.76 -22.79 -0.22 -13.12 16 18 C -0.41 -22.39 9.44 67.92 0.64 -21.75 16 19 H 0.11 5.07 5.30 -2.91 -0.02 5.05 16 20 C -0.02 -1.24 5.49 84.83 0.47 -0.77 16 21 N -0.92 -54.41 13.67 21.61 0.30 -54.12 16 22 Si 1.02 39.74 29.55 68.60 2.03 41.77 16 23 H -0.25 -8.71 7.11 99.48 0.71 -8.01 16 24 H -0.28 -10.70 7.11 99.48 0.71 -9.99 16 25 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 26 C -0.25 -10.13 9.04 22.51 0.20 -9.92 16 27 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.09 0.45 8.14 -2.38 -0.02 0.43 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 33 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.44 2.80 6.72 -213.32 -1.43 1.36 16 35 H 0.44 9.92 8.10 -213.32 -1.73 8.19 16 36 H 0.42 6.82 6.76 -92.71 -0.63 6.19 16 37 H 0.13 4.37 6.43 -2.91 -0.02 4.35 16 38 H 0.15 4.13 8.06 -2.91 -0.02 4.11 16 39 H 0.12 4.81 8.06 -2.91 -0.02 4.78 16 40 H 0.27 14.80 8.31 -92.72 -0.77 14.03 16 41 H 0.14 5.13 5.71 -2.91 -0.02 5.12 16 Total: -1.00 -83.25 359.00 0.65 -82.60 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: -2.67 Total: 29.01 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: 6.23 Total: -4.48 kcal Atomic # 7 Polarization: -88.79 SS G_CDS: -3.63 Total: -92.41 kcal Atomic # 8 Polarization: -55.18 SS G_CDS: -1.30 Total: -56.48 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 2.03 Total: 41.77 kcal Total: -83.25 0.65 -82.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755932286.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.984 kcal (2) G-P(sol) polarization free energy of solvation -83.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds