Wall clock time and date at job start Tue Mar 31 2020 14:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00226 * 2 1 4 4 H 1.48506 * 109.46839 * 275.00225 * 3 2 1 5 5 H 1.48494 * 109.47116 * 34.99906 * 3 2 1 6 6 H 1.48503 * 109.47396 * 155.00082 * 3 2 1 7 7 C 1.38817 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99887 * 174.88487 * 7 2 1 9 9 N 1.36935 * 120.00145 * 354.88619 * 7 2 1 10 10 C 1.47866 * 126.94402 * 5.00091 * 9 7 2 11 11 C 1.58431 * 104.83292 * 182.30281 * 10 9 7 12 12 H 1.09005 * 116.62153 * 159.51460 * 11 10 9 13 13 C 1.57431 * 99.62069 * 32.32722 * 11 10 9 14 14 C 1.49288 * 126.94466 * 185.00026 * 9 7 2 15 15 H 1.08998 * 116.15430 * 15.84625 * 14 9 7 16 16 C 1.56015 * 104.09191 * 246.69604 * 14 9 7 17 17 N 1.47869 * 105.10905 * 287.92148 * 16 14 9 18 18 C 1.34772 * 126.94617 * 181.97793 * 17 16 14 19 19 O 1.21570 * 119.99776 * 184.73308 * 18 17 16 20 20 C 1.47757 * 120.00281 * 4.73447 * 18 17 16 21 21 C 1.40631 * 119.80846 * 172.04181 * 20 18 17 22 22 C 1.35700 * 120.92374 * 180.02562 * 21 20 18 23 23 C 1.40753 * 120.11462 * 359.97438 * 22 21 20 24 24 N 1.33649 * 120.83671 * 179.97438 * 23 22 21 25 25 C 1.31116 * 121.39518 * 179.97438 * 24 23 22 26 26 C 1.39311 * 121.77181 * 359.97438 * 25 24 23 27 27 C 1.36581 * 119.90532 * 0.02562 * 26 25 24 28 28 C 1.40895 * 118.15573 * 359.72846 * 27 26 25 29 29 C 1.38556 * 119.80379 * 352.01727 * 20 18 17 30 30 H 0.96996 * 119.99626 * 359.97438 * 1 2 3 31 31 H 1.09003 * 110.31879 * 300.91071 * 10 9 7 32 32 H 1.08999 * 110.31952 * 62.99230 * 10 9 7 33 33 H 1.09001 * 112.53573 * 192.40542 * 13 11 10 34 34 H 1.08999 * 112.32127 * 64.87040 * 13 11 10 35 35 H 1.09005 * 110.31609 * 169.01511 * 16 14 9 36 36 H 1.09005 * 110.31525 * 46.83021 * 16 14 9 37 37 H 1.07998 * 119.53672 * 359.97438 * 21 20 18 38 38 H 1.08004 * 119.94487 * 179.97438 * 22 21 20 39 39 H 1.08001 * 119.11575 * 179.97438 * 25 24 23 40 40 H 1.08006 * 120.05189 * 179.97438 * 26 25 24 41 41 H 1.07992 * 120.92453 * 180.02562 * 27 26 25 42 42 H 1.07998 * 120.29755 * 359.97438 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3920 2.1074 -1.3948 5 1 1.5046 2.6198 0.8030 6 1 3.5967 1.4119 0.5917 7 6 2.0103 -1.2022 -0.0005 8 1 3.0871 -1.2040 -0.0839 9 7 1.3297 -2.3858 0.1046 10 6 -0.1375 -2.5687 0.1230 11 6 -0.3496 -4.1261 0.3221 12 1 -1.3208 -4.4420 0.7031 13 6 0.9121 -4.4527 1.2052 14 6 1.9191 -3.7522 0.2239 15 1 2.9739 -3.7985 0.4945 16 6 1.5169 -4.4570 -1.1086 17 7 0.0649 -4.7098 -0.9879 18 6 -0.7255 -5.3354 -1.8824 19 8 -1.9247 -5.3996 -1.6936 20 6 -0.1346 -5.9432 -3.0926 21 6 -0.9317 -6.7370 -3.9366 22 6 -0.4123 -7.3066 -5.0535 23 6 0.9415 -7.1075 -5.3835 24 7 1.4681 -7.6619 -6.4796 25 6 2.7275 -7.4834 -6.7977 26 6 3.5795 -6.7090 -6.0133 27 6 3.1068 -6.1130 -4.8789 28 6 1.7517 -6.3029 -4.5433 29 6 1.2014 -5.7274 -3.3895 30 1 -0.4849 0.8400 0.0004 31 1 -0.5770 -2.0197 0.9558 32 1 -0.5722 -2.2365 -0.8197 33 1 1.0951 -5.5237 1.2925 34 1 0.8738 -3.9639 2.1787 35 1 2.0569 -5.3976 -1.2172 36 1 1.7180 -3.8039 -1.9579 37 1 -1.9715 -6.8962 -3.6921 38 1 -1.0387 -7.9136 -5.6903 39 1 3.1148 -7.9491 -7.6918 40 1 4.6125 -6.5808 -6.3013 41 1 3.7527 -5.5089 -4.2590 42 1 1.8120 -5.1169 -2.7408 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032599115.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:07 Heat of formation + Delta-G solvation = 85.235888 kcal Electronic energy + Delta-G solvation = -26946.723313 eV Core-core repulsion = 23279.500745 eV Total energy + Delta-G solvation = -3667.222568 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.16394 -41.33887 -39.52793 -37.66642 -35.62725 -34.58698 -33.44512 -31.75068 -31.44435 -30.30412 -30.11582 -27.16039 -26.30670 -25.09114 -24.71295 -23.21559 -22.48986 -21.42155 -20.54482 -19.52415 -18.87534 -18.16573 -17.90793 -17.25044 -17.14004 -16.47932 -16.24435 -15.72042 -15.46008 -15.35326 -15.31374 -14.93799 -14.65607 -14.33923 -14.10884 -13.80150 -13.67563 -13.45100 -13.17269 -12.97898 -12.82495 -12.71317 -12.67007 -12.48527 -12.21983 -12.12558 -12.01107 -11.77149 -11.59915 -11.53224 -11.13270 -10.72267 -10.44615 -9.90037 -9.57996 -9.35118 -8.91065 -7.84884 -5.20501 -0.80900 -0.33741 0.87816 1.38494 1.48003 1.49091 1.58355 1.85669 2.25640 2.48827 3.07608 3.22224 3.32161 3.34727 3.45658 3.54764 3.73728 3.74732 3.81929 3.92474 4.01344 4.03639 4.07724 4.18046 4.33395 4.44794 4.51470 4.57379 4.72487 4.73293 4.84046 4.87955 4.96048 5.01550 5.04940 5.12577 5.19928 5.24859 5.26450 5.44885 5.48663 5.52740 5.66097 5.77461 6.09476 6.53474 6.89109 7.01999 7.03422 7.71064 8.41593 9.26486 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014385 B = 0.003766 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.963708 B = 7432.596535 C = 8464.240513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.070 4.070 3 Si 0.975 3.025 4 H -0.294 1.294 5 H -0.303 1.303 6 H -0.258 1.258 7 C -0.229 4.229 8 H 0.100 0.900 9 N -0.615 5.615 10 C 0.186 3.814 11 C 0.099 3.901 12 H 0.115 0.885 13 C -0.128 4.128 14 C 0.137 3.863 15 H 0.143 0.857 16 C 0.077 3.923 17 N -0.602 5.602 18 C 0.562 3.438 19 O -0.589 6.589 20 C -0.144 4.144 21 C -0.062 4.062 22 C -0.106 4.106 23 C 0.123 3.877 24 N -0.510 5.510 25 C 0.139 3.861 26 C -0.171 4.171 27 C -0.051 4.051 28 C -0.128 4.128 29 C -0.074 4.074 30 H 0.243 0.757 31 H 0.022 0.978 32 H -0.007 1.007 33 H 0.105 0.895 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.067 0.933 37 H 0.136 0.864 38 H 0.153 0.847 39 H 0.194 0.806 40 H 0.179 0.821 41 H 0.169 0.831 42 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.295 -16.844 -8.461 21.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.263 4.263 3 Si 0.804 3.196 4 H -0.221 1.221 5 H -0.230 1.230 6 H -0.182 1.182 7 C -0.358 4.358 8 H 0.118 0.882 9 N -0.339 5.339 10 C 0.060 3.940 11 C -0.004 4.004 12 H 0.133 0.867 13 C -0.167 4.167 14 C 0.031 3.969 15 H 0.160 0.840 16 C -0.047 4.047 17 N -0.333 5.333 18 C 0.354 3.646 19 O -0.472 6.472 20 C -0.147 4.147 21 C -0.083 4.083 22 C -0.124 4.124 23 C 0.002 3.998 24 N -0.218 5.218 25 C -0.032 4.032 26 C -0.190 4.190 27 C -0.077 4.077 28 C -0.130 4.130 29 C -0.093 4.093 30 H 0.052 0.948 31 H 0.040 0.960 32 H 0.011 0.989 33 H 0.124 0.876 34 H 0.102 0.898 35 H 0.128 0.872 36 H 0.085 0.915 37 H 0.154 0.846 38 H 0.170 0.830 39 H 0.211 0.789 40 H 0.197 0.803 41 H 0.186 0.814 42 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 9.972 -17.155 -8.890 21.743 hybrid contribution -0.238 2.022 0.411 2.077 sum 9.734 -15.133 -8.479 19.891 Atomic orbital electron populations 1.70161 1.06740 1.25140 1.58621 1.25678 0.96298 1.01237 1.03078 0.85107 0.78187 0.79447 0.76861 1.22115 1.23043 1.18215 1.19565 0.91734 0.82949 1.41506 0.88191 1.45461 1.01330 1.01872 1.85282 1.21983 0.85175 0.89885 0.96940 1.24782 0.99580 0.92986 0.83094 0.86710 1.24116 0.93422 1.01469 0.97720 1.23652 0.98621 0.83010 0.91642 0.83957 1.23730 0.79632 1.00427 1.00888 1.49151 1.10612 1.54308 1.19236 1.18323 0.85445 0.78007 0.82853 1.90707 1.15857 1.62854 1.77799 1.19865 0.95400 1.02893 0.96546 1.20880 1.00295 0.94156 0.92969 1.20802 0.93523 1.01006 0.97109 1.19232 0.94706 0.94337 0.91481 1.68101 1.15552 1.22257 1.15925 1.23765 0.87938 0.92553 0.98991 1.22344 1.03460 0.98076 0.95126 1.21977 0.92626 0.96102 0.96970 1.19044 0.96500 1.00733 0.96737 1.23076 0.94372 0.95940 0.95872 0.94767 0.96007 0.98884 0.87649 0.89763 0.87216 0.91464 0.84646 0.82980 0.78883 0.80329 0.81368 0.80416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.74 10.58 21.65 0.23 -57.51 16 2 C -0.07 -3.85 5.49 84.86 0.47 -3.39 16 3 Si 0.97 44.14 29.56 68.60 2.03 46.16 16 4 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 7 C -0.23 -11.62 10.37 84.04 0.87 -10.75 16 8 H 0.10 4.60 7.83 -2.91 -0.02 4.58 16 9 N -0.62 -28.23 3.02 -643.55 -1.95 -30.17 16 10 C 0.19 9.17 4.90 88.06 0.43 9.60 16 11 C 0.10 3.75 5.34 47.96 0.26 4.00 16 12 H 0.12 4.36 8.07 -2.38 -0.02 4.34 16 13 C -0.13 -3.78 6.86 33.59 0.23 -3.55 16 14 C 0.14 4.34 5.47 46.93 0.26 4.60 16 15 H 0.14 3.57 8.14 -2.39 -0.02 3.55 16 16 C 0.08 2.23 4.22 87.16 0.37 2.60 16 17 N -0.60 -21.56 2.95 -770.08 -2.27 -23.83 16 18 C 0.56 21.55 7.84 86.76 0.68 22.23 16 19 O -0.59 -26.64 16.70 -3.93 -0.07 -26.70 16 20 C -0.14 -4.58 5.87 -20.10 -0.12 -4.69 16 21 C -0.06 -1.83 9.49 22.27 0.21 -1.62 16 22 C -0.11 -2.76 9.95 22.30 0.22 -2.54 16 23 C 0.12 3.19 6.61 40.35 0.27 3.45 16 24 N -0.51 -11.73 10.33 -188.46 -1.95 -13.68 16 25 C 0.14 2.10 11.15 85.06 0.95 3.04 16 26 C -0.17 -2.06 10.03 22.14 0.22 -1.84 16 27 C -0.05 -0.83 9.89 22.53 0.22 -0.60 16 28 C -0.13 -3.03 5.74 -21.28 -0.12 -3.15 16 29 C -0.07 -1.95 8.49 22.82 0.19 -1.75 16 30 H 0.24 14.52 8.31 -92.71 -0.77 13.75 16 31 H 0.02 1.21 7.33 -2.39 -0.02 1.20 16 32 H -0.01 -0.42 7.80 -2.39 -0.02 -0.43 16 33 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.11 2.26 6.79 -2.38 -0.02 2.24 16 36 H 0.07 2.18 6.93 -2.38 -0.02 2.17 16 37 H 0.14 3.97 7.63 -2.91 -0.02 3.95 16 38 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 39 H 0.19 1.38 8.06 -2.91 -0.02 1.36 16 40 H 0.18 0.73 8.06 -2.91 -0.02 0.71 16 41 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16 42 H 0.18 4.19 2.82 -4.40 -0.01 4.17 16 Total: -1.00 -77.24 342.34 2.69 -74.56 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: 1.05 Total: 15.53 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: 5.61 Total: 15.64 kcal Atomic # 7 Polarization: -119.26 SS G_CDS: -5.93 Total: -125.19 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.07 Total: -26.70 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -77.24 2.69 -74.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032599115.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.793 kcal (2) G-P(sol) polarization free energy of solvation -77.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds