Wall clock time and date at job start Tue Mar 31 2020 13:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42903 * 109.47551 * 2 1 4 4 C 1.34916 * 117.00362 * 180.02562 * 3 2 1 5 5 O 1.21634 * 119.99728 * 359.97438 * 4 3 2 6 6 C 1.46204 * 120.00184 * 179.97438 * 4 3 2 7 7 C 1.35080 * 120.00087 * 179.97438 * 6 4 3 8 8 C 1.46963 * 119.99772 * 180.02562 * 7 6 4 9 9 C 1.40093 * 120.01874 * 180.02562 * 8 7 6 10 10 C 1.36508 * 119.97772 * 179.97438 * 9 8 7 11 11 C 1.39908 * 120.02307 * 359.97438 * 10 9 8 12 12 C 1.47623 * 119.98222 * 180.02562 * 11 10 9 13 13 N 1.32675 * 119.99993 * 316.16892 * 12 11 10 14 14 C 1.31658 * 121.71738 * 180.02562 * 13 12 11 15 15 C 1.38960 * 121.52697 * 359.97438 * 14 13 12 16 16 C 1.36831 * 119.81170 * 359.97438 * 15 14 13 17 17 C 1.41184 * 118.39419 * 0.24940 * 16 15 14 18 18 C 1.40775 * 120.72424 * 179.72901 * 17 16 15 19 19 H 1.07998 * 120.00547 * 150.50176 * 18 17 16 20 20 C 1.40160 * 119.99813 * 330.49847 * 18 17 16 21 21 N 1.30717 * 120.00137 * 163.10625 * 20 18 17 22 22 Si 1.86802 * 120.00029 * 343.10286 * 20 18 17 23 23 H 1.48502 * 109.46898 * 90.33212 * 22 20 18 24 24 H 1.48501 * 109.47273 * 210.32424 * 22 20 18 25 25 H 1.48494 * 109.47357 * 330.33171 * 22 20 18 26 26 C 1.39915 * 120.03933 * 0.28543 * 11 10 9 27 27 C 1.36512 * 120.02196 * 359.44042 * 26 11 10 28 28 H 1.08998 * 109.47410 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47127 * 300.00340 * 1 2 3 30 30 H 1.08994 * 109.47221 * 60.00002 * 1 2 3 31 31 H 1.09002 * 109.47127 * 239.99660 * 2 1 3 32 32 H 1.09003 * 109.47339 * 120.00258 * 2 1 3 33 33 H 1.08000 * 119.99909 * 0.02562 * 6 4 3 34 34 H 1.08000 * 120.00004 * 0.02562 * 7 6 4 35 35 H 1.08001 * 120.01304 * 359.95329 * 9 8 7 36 36 H 1.07999 * 119.98792 * 180.02562 * 10 9 8 37 37 H 1.08005 * 119.23885 * 179.97438 * 14 13 12 38 38 H 1.08002 * 120.09275 * 179.97438 * 15 14 13 39 39 H 1.08001 * 120.79900 * 179.97438 * 16 15 14 40 40 H 0.97001 * 120.00579 * 179.97438 * 21 20 18 41 41 H 1.08002 * 119.98536 * 179.69776 * 26 11 10 42 42 H 1.07994 * 120.00951 * 180.28238 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3439 1.5240 -0.0005 5 8 4.0848 0.5594 -0.0005 6 6 3.9028 2.8750 -0.0011 7 6 5.2420 3.0520 -0.0012 8 6 5.8037 4.4100 -0.0012 9 6 7.1925 4.5941 -0.0017 10 6 7.7133 5.8559 -0.0023 11 6 6.8607 6.9651 -0.0029 12 6 7.4249 8.3293 -0.0040 13 7 8.4446 8.6261 0.7911 14 6 8.9736 9.8314 0.8178 15 6 8.4898 10.8552 0.0124 16 6 7.4401 10.6177 -0.8326 17 6 6.8740 9.3245 -0.8531 18 6 5.7890 9.0276 -1.6995 19 1 5.6593 8.0253 -2.0800 20 6 4.8768 10.0330 -2.0483 21 7 4.0781 9.8653 -3.0694 22 14 4.8024 11.6126 -1.0538 23 1 5.7343 12.6100 -1.6387 24 1 3.4189 12.1513 -1.0831 25 1 5.1949 11.3323 0.3506 26 6 5.4735 6.7823 0.0032 27 6 4.9508 5.5213 -0.0019 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.2449 3.7315 -0.0007 34 1 5.8998 2.1955 -0.0011 35 1 7.8508 3.7379 -0.0014 36 1 8.7839 5.9979 -0.0032 37 1 9.8028 10.0291 1.4810 38 1 8.9410 11.8356 0.0532 39 1 7.0511 11.4018 -1.4653 40 1 3.4466 10.5609 -3.3106 41 1 4.8162 7.6392 0.0077 42 1 3.8801 5.3804 -0.0018 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245127034.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:56 Heat of formation + Delta-G solvation = -27.394785 kcal Electronic energy + Delta-G solvation = -25138.011098 eV Core-core repulsion = 21433.611746 eV Total energy + Delta-G solvation = -3704.399352 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.44534 -39.37320 -38.16753 -36.82638 -34.30773 -34.04244 -31.95318 -31.59950 -31.25541 -30.48747 -28.60307 -25.96039 -24.87236 -23.34295 -22.42449 -21.87898 -21.54158 -20.54714 -19.25241 -17.97867 -17.70344 -16.80015 -16.67459 -16.42393 -15.71370 -15.06643 -14.97002 -14.38676 -14.20965 -14.18233 -13.71236 -13.57601 -13.22558 -13.11698 -12.94039 -12.65969 -12.51288 -12.35128 -12.20941 -12.13571 -11.99799 -11.69573 -11.56138 -11.11003 -11.01915 -10.61508 -10.54817 -10.44348 -10.39355 -10.22409 -9.95344 -9.68109 -8.71454 -8.52453 -8.37364 -8.18792 -7.45638 -7.27238 -4.76872 0.55433 1.85219 2.02113 2.35732 2.56678 2.71909 2.88315 2.99264 3.08701 3.15519 3.69846 4.26705 4.39901 4.67433 4.72129 4.83398 4.98249 5.05799 5.13995 5.21416 5.28155 5.36613 5.46679 5.50231 5.54872 5.74265 5.81384 5.85440 5.97473 5.99349 6.12080 6.18389 6.34247 6.36090 6.40830 6.47229 6.58335 6.66689 6.77565 6.97176 7.04956 7.13138 7.30952 7.36600 7.52233 7.61626 7.79460 7.99726 8.23131 8.40292 9.22511 9.71138 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015457 B = 0.002804 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.002959 B = 9982.192956 C =11444.994718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.351 6.351 4 C 0.502 3.498 5 O -0.524 6.524 6 C -0.231 4.231 7 C 0.028 3.972 8 C -0.121 4.121 9 C -0.088 4.088 10 C -0.118 4.118 11 C 0.049 3.951 12 C 0.017 3.983 13 N -0.437 5.437 14 C -0.040 4.040 15 C -0.117 4.117 16 C -0.209 4.209 17 C 0.063 3.937 18 C -0.418 4.418 19 H 0.105 0.895 20 C 0.082 3.918 21 N -0.781 5.781 22 Si 0.911 3.089 23 H -0.265 1.265 24 H -0.285 1.285 25 H -0.245 1.245 26 C -0.100 4.100 27 C -0.091 4.091 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.142 0.858 34 H 0.131 0.869 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.128 0.872 38 H 0.105 0.895 39 H 0.113 0.887 40 H 0.292 0.708 41 H 0.138 0.862 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.322 -9.254 4.021 10.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.268 6.268 4 C 0.351 3.649 5 O -0.415 6.415 6 C -0.250 4.250 7 C 0.009 3.991 8 C -0.121 4.121 9 C -0.106 4.106 10 C -0.137 4.137 11 C 0.048 3.952 12 C -0.122 4.122 13 N -0.145 5.145 14 C -0.200 4.200 15 C -0.137 4.137 16 C -0.234 4.234 17 C 0.057 3.943 18 C -0.445 4.445 19 H 0.123 0.877 20 C -0.141 4.141 21 N -0.403 5.403 22 Si 0.737 3.263 23 H -0.191 1.191 24 H -0.212 1.212 25 H -0.169 1.169 26 C -0.118 4.118 27 C -0.109 4.109 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.159 0.841 34 H 0.149 0.851 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.145 0.855 38 H 0.123 0.877 39 H 0.131 0.869 40 H 0.103 0.897 41 H 0.156 0.844 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.025 -10.146 4.350 11.750 hybrid contribution -0.409 1.406 -0.424 1.524 sum -4.434 -8.740 3.926 10.558 Atomic orbital electron populations 1.21807 0.92679 1.02816 1.03608 1.22602 0.95376 0.81084 1.02314 1.86207 1.24448 1.31782 1.84389 1.21351 0.80237 0.90780 0.72578 1.90849 1.60234 1.43183 1.47248 1.22059 0.96145 0.93441 1.13312 1.22496 0.94398 0.96260 0.85914 1.18808 0.93639 0.91629 1.08031 1.20901 0.93559 0.97240 0.98920 1.20947 0.99968 0.91486 1.01295 1.18667 0.92444 0.91296 0.92760 1.19447 0.99177 0.93633 0.99946 1.67067 1.07669 1.20943 1.18781 1.21708 1.03993 0.89437 1.04823 1.21402 0.96869 0.98884 0.96560 1.21240 0.99986 0.98222 1.03990 1.18415 0.93413 0.91298 0.91138 1.19587 1.05408 0.98958 1.20554 0.87743 1.26289 0.94230 0.99954 0.93583 1.69615 1.15755 1.35035 1.19890 0.86345 0.76979 0.80370 0.82609 1.19143 1.21211 1.16863 1.21167 0.94916 0.97278 0.98482 1.21026 0.99203 0.91960 0.98744 0.90418 0.91471 0.91414 0.91614 0.91648 0.84050 0.85080 0.86197 0.85909 0.85477 0.87666 0.86910 0.89738 0.84407 0.85877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.28 37.15 0.38 -0.71 16 2 C 0.06 0.61 6.10 37.15 0.23 0.83 16 3 O -0.35 -4.48 10.12 -41.09 -0.42 -4.89 16 4 C 0.50 7.10 7.87 33.93 0.27 7.37 16 5 O -0.52 -8.45 16.01 -19.37 -0.31 -8.76 16 6 C -0.23 -3.07 9.53 -37.51 -0.36 -3.43 16 7 C 0.03 0.38 9.45 -37.17 -0.35 0.03 16 8 C -0.12 -1.86 5.88 -104.98 -0.62 -2.47 16 9 C -0.09 -1.37 9.73 -39.51 -0.38 -1.75 16 10 C -0.12 -2.13 9.59 -39.58 -0.38 -2.51 16 11 C 0.05 1.01 5.26 -104.81 -0.55 0.46 16 12 C 0.02 0.40 6.42 -82.26 -0.53 -0.13 16 13 N -0.44 -9.76 10.15 -9.18 -0.09 -9.85 16 14 C -0.04 -0.82 11.16 -17.36 -0.19 -1.01 16 15 C -0.12 -2.36 10.03 -39.82 -0.40 -2.76 16 16 C -0.21 -4.66 7.31 -38.97 -0.29 -4.95 16 17 C 0.06 1.47 5.12 -106.40 -0.54 0.93 16 18 C -0.42 -10.04 7.21 -37.90 -0.27 -10.31 16 19 H 0.10 2.65 6.72 -52.49 -0.35 2.29 16 20 C 0.08 1.91 5.44 -17.30 -0.09 1.82 16 21 N -0.78 -18.56 13.92 55.56 0.77 -17.79 16 22 Si 0.91 18.71 24.53 -169.99 -4.17 14.54 16 23 H -0.27 -5.29 6.46 56.52 0.37 -4.92 16 24 H -0.29 -5.64 7.11 56.52 0.40 -5.24 16 25 H -0.25 -5.25 7.00 56.52 0.40 -4.85 16 26 C -0.10 -1.91 7.80 -39.58 -0.31 -2.22 16 27 C -0.09 -1.50 9.35 -39.51 -0.37 -1.87 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.65 8.13 -51.93 -0.42 0.22 16 32 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 33 H 0.14 1.72 6.06 -52.49 -0.32 1.40 16 34 H 0.13 1.67 7.52 -52.49 -0.39 1.28 16 35 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 37 H 0.13 2.21 8.06 -52.48 -0.42 1.79 16 38 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 39 H 0.11 2.45 4.53 -52.49 -0.24 2.21 16 40 H 0.29 6.25 8.29 -40.82 -0.34 5.92 16 41 H 0.14 2.76 6.75 -52.49 -0.35 2.41 16 42 H 0.12 1.73 6.15 -52.49 -0.32 1.40 16 LS Contribution 357.77 15.07 5.39 5.39 Total: -1.00 -27.12 357.77 -8.55 -35.66 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -4.96 Total: 8.39 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -4.76 Total: -22.69 kcal Atomic # 7 Polarization: -28.32 SS G_CDS: 0.68 Total: -27.64 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -0.73 Total: -13.65 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -4.17 Total: 14.54 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -27.12 -8.55 -35.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245127034.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.268 kcal (2) G-P(sol) polarization free energy of solvation -27.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds