Wall clock time and date at job start Tue Mar 31 2020 13:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42903 * 109.47551 * 2 1 4 4 C 1.34916 * 117.00362 * 180.02562 * 3 2 1 5 5 O 1.21634 * 119.99728 * 359.97438 * 4 3 2 6 6 C 1.46204 * 120.00184 * 179.97438 * 4 3 2 7 7 C 1.35080 * 120.00087 * 179.97438 * 6 4 3 8 8 C 1.46963 * 119.99772 * 180.02562 * 7 6 4 9 9 C 1.40093 * 120.01874 * 180.02562 * 8 7 6 10 10 C 1.36508 * 119.97772 * 179.97438 * 9 8 7 11 11 C 1.39908 * 120.02307 * 359.97438 * 10 9 8 12 12 C 1.47623 * 119.98222 * 180.02562 * 11 10 9 13 13 N 1.32675 * 119.99993 * 316.16892 * 12 11 10 14 14 C 1.31658 * 121.71738 * 180.02562 * 13 12 11 15 15 C 1.38960 * 121.52697 * 359.97438 * 14 13 12 16 16 C 1.36831 * 119.81170 * 359.97438 * 15 14 13 17 17 C 1.41184 * 118.39419 * 0.24940 * 16 15 14 18 18 C 1.40775 * 120.72424 * 179.72901 * 17 16 15 19 19 H 1.07998 * 120.00547 * 150.50176 * 18 17 16 20 20 C 1.40160 * 119.99813 * 330.49847 * 18 17 16 21 21 N 1.30717 * 120.00137 * 163.10625 * 20 18 17 22 22 Si 1.86802 * 120.00029 * 343.10286 * 20 18 17 23 23 H 1.48502 * 109.46898 * 90.33212 * 22 20 18 24 24 H 1.48501 * 109.47273 * 210.32424 * 22 20 18 25 25 H 1.48494 * 109.47357 * 330.33171 * 22 20 18 26 26 C 1.39915 * 120.03933 * 0.28543 * 11 10 9 27 27 C 1.36512 * 120.02196 * 359.44042 * 26 11 10 28 28 H 1.08998 * 109.47410 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47127 * 300.00340 * 1 2 3 30 30 H 1.08994 * 109.47221 * 60.00002 * 1 2 3 31 31 H 1.09002 * 109.47127 * 239.99660 * 2 1 3 32 32 H 1.09003 * 109.47339 * 120.00258 * 2 1 3 33 33 H 1.08000 * 119.99909 * 0.02562 * 6 4 3 34 34 H 1.08000 * 120.00004 * 0.02562 * 7 6 4 35 35 H 1.08001 * 120.01304 * 359.95329 * 9 8 7 36 36 H 1.07999 * 119.98792 * 180.02562 * 10 9 8 37 37 H 1.08005 * 119.23885 * 179.97438 * 14 13 12 38 38 H 1.08002 * 120.09275 * 179.97438 * 15 14 13 39 39 H 1.08001 * 120.79900 * 179.97438 * 16 15 14 40 40 H 0.97001 * 120.00579 * 179.97438 * 21 20 18 41 41 H 1.08002 * 119.98536 * 179.69776 * 26 11 10 42 42 H 1.07994 * 120.00951 * 180.28238 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3439 1.5240 -0.0005 5 8 4.0848 0.5594 -0.0005 6 6 3.9028 2.8750 -0.0011 7 6 5.2420 3.0520 -0.0012 8 6 5.8037 4.4100 -0.0012 9 6 7.1925 4.5941 -0.0017 10 6 7.7133 5.8559 -0.0023 11 6 6.8607 6.9651 -0.0029 12 6 7.4249 8.3293 -0.0040 13 7 8.4446 8.6261 0.7911 14 6 8.9736 9.8314 0.8178 15 6 8.4898 10.8552 0.0124 16 6 7.4401 10.6177 -0.8326 17 6 6.8740 9.3245 -0.8531 18 6 5.7890 9.0276 -1.6995 19 1 5.6593 8.0253 -2.0800 20 6 4.8768 10.0330 -2.0483 21 7 4.0781 9.8653 -3.0694 22 14 4.8024 11.6126 -1.0538 23 1 5.7343 12.6100 -1.6387 24 1 3.4189 12.1513 -1.0831 25 1 5.1949 11.3323 0.3506 26 6 5.4735 6.7823 0.0032 27 6 4.9508 5.5213 -0.0019 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.2449 3.7315 -0.0007 34 1 5.8998 2.1955 -0.0011 35 1 7.8508 3.7379 -0.0014 36 1 8.7839 5.9979 -0.0032 37 1 9.8028 10.0291 1.4810 38 1 8.9410 11.8356 0.0532 39 1 7.0511 11.4018 -1.4653 40 1 3.4466 10.5609 -3.3106 41 1 4.8162 7.6392 0.0077 42 1 3.8801 5.3804 -0.0018 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245127034.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:55 Heat of formation + Delta-G solvation = -39.712999 kcal Electronic energy + Delta-G solvation = -25138.545256 eV Core-core repulsion = 21433.611746 eV Total energy + Delta-G solvation = -3704.933510 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.131 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.51980 -40.89946 -39.63146 -37.89553 -35.99283 -35.34683 -33.30279 -32.97428 -32.43467 -31.87708 -30.00461 -27.56736 -26.13511 -24.51482 -23.73220 -23.26100 -22.92048 -21.97527 -20.43575 -19.46423 -19.06956 -18.28245 -17.63522 -17.59884 -17.24346 -16.57853 -16.40442 -15.80282 -15.58720 -15.31606 -15.10040 -14.78475 -14.58015 -14.51937 -14.16420 -14.05896 -13.83327 -13.71623 -13.56232 -13.29483 -13.09359 -12.97019 -12.69814 -12.57058 -12.47477 -12.02464 -11.81433 -11.77253 -11.62942 -11.49865 -11.38175 -11.31533 -10.34909 -10.02950 -9.90682 -9.77493 -9.00117 -8.90852 -6.54046 -0.67252 0.38986 0.64950 0.72331 1.05815 1.22292 1.36379 1.43882 1.74827 1.98353 2.03607 2.57618 2.98756 3.49417 3.63254 3.73921 3.85939 4.00952 4.05193 4.09606 4.15177 4.22052 4.27947 4.35504 4.39887 4.54667 4.57342 4.62548 4.74937 4.78619 4.92427 4.95333 5.00240 5.05492 5.14118 5.17503 5.23021 5.29214 5.43772 5.52712 5.55286 5.66089 5.70261 5.88408 5.92510 6.08135 6.21933 6.52999 6.63671 6.71819 7.54358 8.04111 Molecular weight = 323.13amu Principal moments of inertia in cm(-1) A = 0.015457 B = 0.002804 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.002959 B = 9982.192956 C =11444.994718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 O -0.355 6.355 4 C 0.503 3.497 5 O -0.545 6.545 6 C -0.219 4.219 7 C 0.026 3.974 8 C -0.107 4.107 9 C -0.083 4.083 10 C -0.123 4.123 11 C 0.012 3.988 12 C 0.009 3.991 13 N -0.456 5.456 14 C -0.036 4.036 15 C -0.117 4.117 16 C -0.225 4.225 17 C 0.043 3.957 18 C -0.439 4.439 19 H 0.076 0.924 20 C 0.055 3.945 21 N -0.819 5.819 22 Si 0.957 3.043 23 H -0.252 1.252 24 H -0.273 1.273 25 H -0.261 1.261 26 C -0.111 4.111 27 C -0.095 4.095 28 H 0.101 0.899 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.153 0.847 34 H 0.145 0.855 35 H 0.156 0.844 36 H 0.124 0.876 37 H 0.163 0.837 38 H 0.145 0.855 39 H 0.116 0.884 40 H 0.299 0.701 41 H 0.117 0.883 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.081 -9.973 5.097 11.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.023 4.023 3 O -0.272 6.272 4 C 0.352 3.648 5 O -0.438 6.438 6 C -0.238 4.238 7 C 0.008 3.992 8 C -0.107 4.107 9 C -0.101 4.101 10 C -0.141 4.141 11 C 0.011 3.989 12 C -0.130 4.130 13 N -0.164 5.164 14 C -0.196 4.196 15 C -0.137 4.137 16 C -0.250 4.250 17 C 0.038 3.962 18 C -0.467 4.467 19 H 0.094 0.906 20 C -0.164 4.164 21 N -0.443 5.443 22 Si 0.781 3.219 23 H -0.177 1.177 24 H -0.199 1.199 25 H -0.185 1.185 26 C -0.130 4.130 27 C -0.112 4.112 28 H 0.119 0.881 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.170 0.830 34 H 0.163 0.837 35 H 0.173 0.827 36 H 0.142 0.858 37 H 0.180 0.820 38 H 0.163 0.837 39 H 0.134 0.866 40 H 0.110 0.890 41 H 0.135 0.865 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.799 -10.868 5.418 12.724 hybrid contribution -0.431 1.421 -0.647 1.619 sum -4.230 -9.447 4.771 11.398 Atomic orbital electron populations 1.21832 0.90420 1.04415 1.03657 1.22924 0.97172 0.79783 1.02457 1.86210 1.23549 1.33535 1.83866 1.21442 0.80666 0.90660 0.72044 1.90840 1.60821 1.43886 1.48284 1.22216 0.96330 0.93634 1.11633 1.22448 0.94748 0.95460 0.86535 1.18993 0.93631 0.92158 1.05949 1.21234 0.94160 0.97304 0.97369 1.21014 0.99780 0.91897 1.01444 1.18791 0.93277 0.91217 0.95623 1.19855 0.99069 0.94688 0.99389 1.67174 1.08082 1.22051 1.19070 1.22437 1.03952 0.88839 1.04331 1.21801 0.95882 1.00683 0.95314 1.21446 1.00869 0.97828 1.04862 1.18639 0.93647 0.92478 0.91435 1.19384 1.06949 0.98093 1.22316 0.90594 1.26785 0.93707 1.01871 0.94018 1.69629 1.17079 1.36363 1.21194 0.85652 0.77757 0.78094 0.80445 1.17731 1.19907 1.18547 1.21057 0.94424 0.97859 0.99701 1.21248 1.00598 0.91232 0.98146 0.88053 0.91301 0.91453 0.91602 0.91426 0.82959 0.83706 0.82653 0.85842 0.81998 0.83698 0.86620 0.88952 0.86489 0.83742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 10.28 71.98 0.74 -1.05 16 2 C 0.05 0.93 6.10 71.98 0.44 1.37 16 3 O -0.35 -8.49 10.12 -58.31 -0.59 -9.08 16 4 C 0.50 13.36 7.87 69.89 0.55 13.91 16 5 O -0.55 -16.72 16.01 19.40 0.31 -16.41 16 6 C -0.22 -5.40 9.53 23.61 0.23 -5.17 16 7 C 0.03 0.66 9.45 23.83 0.23 0.89 16 8 C -0.11 -3.13 5.88 -20.09 -0.12 -3.25 16 9 C -0.08 -2.45 9.73 22.32 0.22 -2.23 16 10 C -0.12 -4.42 9.59 22.27 0.21 -4.21 16 11 C 0.01 0.50 5.26 -19.99 -0.11 0.39 16 12 C 0.01 0.41 6.42 42.41 0.27 0.68 16 13 N -0.46 -20.19 10.15 -182.96 -1.86 -22.05 16 14 C -0.04 -1.41 11.16 84.89 0.95 -0.46 16 15 C -0.12 -4.49 10.03 22.11 0.22 -4.27 16 16 C -0.22 -9.95 7.31 22.66 0.17 -9.79 16 17 C 0.04 2.08 5.12 -21.02 -0.11 1.97 16 18 C -0.44 -22.26 7.21 23.36 0.17 -22.09 16 19 H 0.08 4.16 6.72 -2.91 -0.02 4.14 16 20 C 0.06 2.66 5.44 85.33 0.46 3.12 16 21 N -0.82 -40.40 13.92 21.86 0.30 -40.10 16 22 Si 0.96 38.88 24.53 68.60 1.68 40.56 16 23 H -0.25 -9.59 6.46 99.48 0.64 -8.95 16 24 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 25 H -0.26 -11.17 7.00 99.48 0.70 -10.47 16 26 C -0.11 -4.45 7.80 22.27 0.17 -4.28 16 27 C -0.09 -3.08 9.35 22.31 0.21 -2.88 16 28 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 1.21 8.13 -2.39 -0.02 1.19 16 32 H 0.07 1.21 8.13 -2.39 -0.02 1.19 16 33 H 0.15 3.39 6.06 -2.91 -0.02 3.37 16 34 H 0.15 3.29 7.52 -2.91 -0.02 3.26 16 35 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 36 H 0.12 4.34 8.06 -2.91 -0.02 4.31 16 37 H 0.16 5.08 8.06 -2.91 -0.02 5.05 16 38 H 0.15 4.33 8.06 -2.91 -0.02 4.31 16 39 H 0.12 4.97 4.53 -2.91 -0.01 4.95 16 40 H 0.30 13.22 8.29 -92.71 -0.77 12.45 16 41 H 0.12 5.06 6.75 -2.91 -0.02 5.04 16 42 H 0.15 3.95 6.15 -2.91 -0.02 3.93 16 Total: -1.00 -60.25 357.77 5.73 -54.52 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: 0.98 Total: 29.90 kcal Atomic # 6 Polarization: -42.24 SS G_CDS: 4.90 Total: -37.34 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: -1.55 Total: -62.15 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.28 Total: -25.49 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 1.68 Total: 40.56 kcal Total: -60.25 5.73 -54.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245127034.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.804 kcal (2) G-P(sol) polarization free energy of solvation -60.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds