Wall clock time and date at job start Tue Mar 31 2020 14:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35998 * 116.99772 * 2 1 4 4 C 1.38691 * 120.03947 * 359.97438 * 3 2 1 5 5 C 1.38230 * 120.11889 * 180.02562 * 4 3 2 6 6 C 1.38213 * 120.19328 * 359.78756 * 5 4 3 7 7 C 1.38792 * 120.07674 * 0.46702 * 6 5 4 8 8 N 1.40179 * 120.06182 * 179.78893 * 7 6 5 9 9 C 1.34774 * 119.99603 * 24.78344 * 8 7 6 10 10 O 1.21594 * 120.00716 * 5.63526 * 9 8 7 11 11 N 1.34778 * 119.99744 * 185.63292 * 9 8 7 12 12 C 1.46505 * 119.99834 * 180.02562 * 11 9 8 13 13 C 1.50702 * 109.46829 * 179.97438 * 12 11 9 14 14 O 1.21290 * 119.99994 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99945 * 179.97438 * 13 12 11 16 16 C 1.37094 * 120.00076 * 180.02562 * 15 13 12 17 17 H 1.08005 * 120.00002 * 0.02562 * 16 15 13 18 18 C 1.38945 * 120.00224 * 180.02562 * 16 15 13 19 19 N 1.31411 * 120.00218 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99830 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.46943 * 90.00511 * 20 18 16 22 22 H 1.48503 * 109.47437 * 210.00472 * 20 18 16 23 23 H 1.48495 * 109.47504 * 330.00628 * 20 18 16 24 24 C 1.38943 * 120.03426 * 180.02562 * 3 2 1 25 25 O 1.36083 * 120.10026 * 359.97438 * 24 3 2 26 26 C 1.42896 * 116.99799 * 269.97995 * 25 24 3 27 27 H 1.08993 * 109.47124 * 60.00291 * 1 2 3 28 28 H 1.08999 * 109.47246 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46893 * 300.00138 * 1 2 3 30 30 H 1.07994 * 119.94235 * 0.02562 * 4 3 2 31 31 H 1.07993 * 119.90387 * 180.02562 * 5 4 3 32 32 H 1.08001 * 119.96545 * 180.23468 * 6 5 4 33 33 H 0.96996 * 119.99740 * 205.05764 * 8 7 6 34 34 H 0.96997 * 119.99861 * 0.02562 * 11 9 8 35 35 H 1.09001 * 109.47161 * 299.99812 * 12 11 9 36 36 H 1.08997 * 109.47147 * 60.00523 * 12 11 9 37 37 H 0.97003 * 119.99585 * 0.02562 * 15 13 12 38 38 H 0.97005 * 119.99963 * 179.97438 * 19 18 16 39 39 H 1.09004 * 109.47282 * 299.99484 * 26 25 24 40 40 H 1.09003 * 109.47574 * 59.99642 * 26 25 24 41 41 H 1.09003 * 109.47360 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2918 2.3754 -0.0005 5 6 1.9176 3.6080 -0.0011 6 6 3.2974 3.6869 0.0034 7 6 4.0605 2.5276 -0.0014 8 7 5.4600 2.6081 -0.0014 9 6 6.0719 3.7028 0.4921 10 8 5.4173 4.5749 1.0300 11 7 7.4097 3.8308 0.3895 12 6 8.0750 5.0205 0.9265 13 6 9.5591 4.9178 0.6856 14 8 10.0160 3.9467 0.1205 15 7 10.3785 5.9056 1.0971 16 6 11.7285 5.8125 0.8775 17 1 12.1354 4.9477 0.3744 18 6 12.5734 6.8305 1.3023 19 7 13.8674 6.7415 1.0913 20 14 11.8696 8.3265 2.1719 21 1 11.8389 8.0791 3.6358 22 1 12.7202 9.5101 1.8876 23 1 10.4902 8.5795 1.6836 24 6 3.4339 1.2854 -0.0005 25 8 4.1777 0.1459 -0.0005 26 6 4.5332 -0.3968 1.2727 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.2133 2.3185 -0.0005 31 1 1.3266 4.5118 -0.0011 32 1 3.7825 4.6519 0.0068 33 1 5.9877 1.8776 -0.3602 34 1 7.9319 3.1353 -0.0398 35 1 7.6865 5.9095 0.4296 36 1 7.8852 5.0907 1.9975 37 1 10.0130 6.6824 1.5487 38 1 14.4572 7.4524 1.3875 39 1 5.1188 0.3352 1.8290 40 1 3.6282 -0.6377 1.8305 41 1 5.1234 -1.3020 1.1300 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001680410641.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:10 Heat of formation + Delta-G solvation = -120.293725 kcal Electronic energy + Delta-G solvation = -26540.326105 eV Core-core repulsion = 22421.049089 eV Total energy + Delta-G solvation = -4119.277015 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.12064 -41.06609 -40.24463 -39.13568 -37.93422 -36.31324 -35.62793 -35.39825 -33.83446 -31.16269 -30.64812 -29.04351 -28.26786 -27.55522 -26.22855 -23.81699 -23.31190 -21.87800 -21.48496 -20.61469 -19.82796 -19.51088 -18.46778 -17.79975 -17.47226 -17.25798 -16.96979 -16.88829 -16.66204 -16.15167 -16.09599 -15.87988 -15.65887 -15.48779 -15.44653 -14.92414 -14.36039 -14.30757 -14.02820 -13.88757 -13.53668 -13.41869 -13.08421 -12.96290 -12.72937 -12.44269 -12.32884 -12.03481 -11.99820 -11.57926 -11.50483 -11.35078 -10.90097 -10.66841 -10.35630 -10.27040 -9.26774 -9.02237 -8.45291 -6.07561 0.07985 0.34187 1.26630 1.32244 1.34756 1.45111 1.77882 1.90406 2.20993 2.31584 2.46658 2.74663 2.95103 3.10502 3.11285 3.93822 3.97448 4.05637 4.19215 4.27597 4.39450 4.40782 4.42296 4.42696 4.44519 4.46533 4.47568 4.74826 4.78613 5.01109 5.12201 5.20893 5.21572 5.47715 5.51058 5.74046 5.78379 5.88226 6.14572 6.48476 6.59255 6.75710 6.78647 7.24565 7.31316 7.77945 8.71027 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.030637 B = 0.002265 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.712873 B =12361.382114 C =13030.501681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.326 6.326 3 C 0.124 3.876 4 C -0.214 4.214 5 C -0.056 4.056 6 C -0.175 4.175 7 C 0.181 3.819 8 N -0.669 5.669 9 C 0.710 3.290 10 O -0.597 6.597 11 N -0.718 5.718 12 C 0.138 3.862 13 C 0.445 3.555 14 O -0.615 6.615 15 N -0.576 5.576 16 C -0.331 4.331 17 H 0.063 0.937 18 C -0.009 4.009 19 N -0.926 5.926 20 Si 0.960 3.040 21 H -0.257 1.257 22 H -0.274 1.274 23 H -0.231 1.231 24 C 0.005 3.995 25 O -0.335 6.335 26 C 0.031 3.969 27 H 0.069 0.931 28 H 0.117 0.883 29 H 0.068 0.932 30 H 0.163 0.837 31 H 0.159 0.841 32 H 0.140 0.860 33 H 0.420 0.580 34 H 0.411 0.589 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.393 0.607 38 H 0.281 0.719 39 H 0.038 0.962 40 H 0.048 0.952 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.277 -8.228 0.819 31.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.240 6.240 3 C 0.078 3.922 4 C -0.233 4.233 5 C -0.075 4.075 6 C -0.196 4.196 7 C 0.084 3.916 8 N -0.316 5.316 9 C 0.410 3.590 10 O -0.476 6.476 11 N -0.375 5.375 12 C 0.010 3.990 13 C 0.232 3.768 14 O -0.501 6.501 15 N -0.216 5.216 16 C -0.460 4.460 17 H 0.081 0.919 18 C -0.209 4.209 19 N -0.566 5.566 20 Si 0.779 3.221 21 H -0.181 1.181 22 H -0.199 1.199 23 H -0.154 1.154 24 C -0.042 4.042 25 O -0.251 6.251 26 C -0.063 4.063 27 H 0.087 0.913 28 H 0.135 0.865 29 H 0.087 0.913 30 H 0.181 0.819 31 H 0.177 0.823 32 H 0.158 0.842 33 H 0.258 0.742 34 H 0.249 0.751 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.229 0.771 38 H 0.091 0.909 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -30.066 -8.274 0.794 31.194 hybrid contribution 0.930 0.238 0.237 0.989 sum -29.136 -8.036 1.031 30.242 Atomic orbital electron populations 1.23413 0.76133 1.05655 1.02631 1.86121 1.23599 1.25932 1.88322 1.19149 0.90567 0.85934 0.96595 1.21448 1.01499 0.90833 1.09516 1.21196 0.93159 0.98500 0.94616 1.21392 0.94628 0.97927 1.05646 1.17717 0.81920 0.93043 0.98890 1.42382 1.05046 1.20438 1.63704 1.15734 0.81750 0.82330 0.79139 1.90870 1.64407 1.42511 1.49814 1.44729 1.05191 1.24417 1.63193 1.20786 0.87590 0.88946 1.01717 1.20492 0.89017 0.83974 0.83303 1.90537 1.77911 1.34002 1.47662 1.41898 1.06398 1.20010 1.53333 1.19017 0.81646 1.07127 1.38205 0.91898 1.26091 0.95250 1.01777 0.97826 1.69785 1.04437 1.35663 1.46673 0.85435 0.80120 0.77123 0.79381 1.18096 1.19942 1.15376 1.17573 0.87646 0.85142 1.13888 1.86091 1.70369 1.38355 1.30318 1.23132 1.00006 0.99019 0.84122 0.91274 0.86474 0.91309 0.81920 0.82328 0.84205 0.74217 0.75062 0.87356 0.87429 0.77134 0.90935 0.94354 0.93329 0.86932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.33 -6.21 10.28 -79.57 -0.82 -7.03 16 3 C 0.12 2.62 6.69 22.55 0.15 2.77 16 4 C -0.21 -3.48 9.04 22.38 0.20 -3.28 16 5 C -0.06 -1.01 10.03 22.26 0.22 -0.78 16 6 C -0.18 -4.28 8.72 22.40 0.20 -4.09 16 7 C 0.18 4.66 6.44 38.15 0.25 4.91 16 8 N -0.67 -17.01 5.29 -316.84 -1.68 -18.69 16 9 C 0.71 20.87 8.37 179.05 1.50 22.37 16 10 O -0.60 -19.91 13.51 -4.01 -0.05 -19.97 16 11 N -0.72 -21.44 5.53 -482.28 -2.67 -24.11 16 12 C 0.14 4.30 6.15 85.63 0.53 4.82 16 13 C 0.44 18.87 7.85 87.66 0.69 19.56 16 14 O -0.62 -31.18 15.24 -3.06 -0.05 -31.23 16 15 N -0.58 -25.92 5.09 -306.98 -1.56 -27.48 16 16 C -0.33 -18.58 10.16 84.04 0.85 -17.72 16 17 H 0.06 4.19 7.39 -2.91 -0.02 4.16 16 18 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 19 N -0.93 -54.11 13.96 21.66 0.30 -53.81 16 20 Si 0.96 37.55 27.74 68.60 1.90 39.45 16 21 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 22 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 23 H -0.23 -7.61 6.52 99.48 0.65 -6.96 16 24 C 0.00 0.12 5.75 22.65 0.13 0.25 16 25 O -0.33 -8.11 9.62 -80.53 -0.77 -8.88 16 26 C 0.03 0.60 11.13 113.37 1.26 1.86 16 27 H 0.07 0.45 7.66 -2.39 -0.02 0.43 16 28 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.07 0.43 7.66 -2.38 -0.02 0.42 16 30 H 0.16 1.52 6.29 -2.91 -0.02 1.50 16 31 H 0.16 1.88 8.06 -2.91 -0.02 1.85 16 32 H 0.14 3.88 5.78 -2.91 -0.02 3.86 16 33 H 0.42 9.34 8.37 -92.71 -0.78 8.57 16 34 H 0.41 12.41 7.46 -92.71 -0.69 11.72 16 35 H 0.11 3.01 8.14 -2.39 -0.02 3.00 16 36 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 37 H 0.39 14.69 5.76 -92.71 -0.53 14.15 16 38 H 0.28 15.01 8.31 -92.70 -0.77 14.24 16 39 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -76.22 354.24 1.22 -75.00 By element: Atomic # 1 Polarization: 45.82 SS G_CDS: -0.94 Total: 44.87 kcal Atomic # 6 Polarization: 24.32 SS G_CDS: 7.56 Total: 31.88 kcal Atomic # 7 Polarization: -118.49 SS G_CDS: -5.60 Total: -124.09 kcal Atomic # 8 Polarization: -65.42 SS G_CDS: -1.69 Total: -67.11 kcal Atomic # 14 Polarization: 37.55 SS G_CDS: 1.90 Total: 39.45 kcal Total: -76.22 1.22 -75.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680410641.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.297 kcal (2) G-P(sol) polarization free energy of solvation -76.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds