Wall clock time and date at job start Tue Mar 31 2020 14:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52991 * 109.47352 * 2.31006 * 3 2 1 5 5 N 1.46509 * 109.47288 * 180.02562 * 4 3 2 6 6 C 1.46500 * 119.99607 * 271.21162 * 5 4 3 7 7 C 1.50706 * 109.47053 * 278.22739 * 6 5 4 8 8 H 1.07999 * 119.99769 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00030 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00202 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00129 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47082 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47169 * 119.99783 * 11 9 7 14 14 H 1.48494 * 109.47329 * 240.00169 * 11 9 7 15 15 C 1.34773 * 120.00066 * 91.20988 * 5 4 3 16 16 O 1.21577 * 120.00069 * 6.16434 * 15 5 4 17 17 C 1.47649 * 119.99769 * 186.16853 * 15 5 4 18 18 C 1.39716 * 120.07639 * 150.14740 * 17 15 5 19 19 C 1.37715 * 119.92112 * 180.02562 * 18 17 15 20 20 C 1.39055 * 120.07348 * 0.02562 * 19 18 17 21 21 N 1.39809 * 119.91603 * 180.02562 * 20 19 18 22 22 C 1.36634 * 125.67902 * 359.95937 * 21 20 19 23 23 C 1.34808 * 108.19448 * 180.02562 * 22 21 20 24 24 C 1.40988 * 107.48632 * 0.02562 * 23 22 21 25 25 C 1.34817 * 107.48008 * 359.97438 * 24 23 22 26 26 C 1.39063 * 120.16383 * 0.27229 * 20 19 18 27 27 C 1.37709 * 120.07516 * 359.44943 * 26 20 19 28 28 H 1.09003 * 109.47324 * 242.30477 * 3 2 1 29 29 H 1.09005 * 109.47260 * 122.30956 * 3 2 1 30 30 H 1.09002 * 109.47620 * 60.00205 * 4 3 2 31 31 H 1.08997 * 109.47296 * 299.99661 * 4 3 2 32 32 H 1.08997 * 109.47429 * 38.23041 * 6 5 4 33 33 H 1.09004 * 109.46914 * 158.23373 * 6 5 4 34 34 H 0.96993 * 120.00521 * 179.97438 * 10 9 7 35 35 H 1.08007 * 120.04089 * 0.02562 * 18 17 15 36 36 H 1.07995 * 119.96168 * 179.97438 * 19 18 17 37 37 H 1.07996 * 125.90515 * 0.03346 * 22 21 20 38 38 H 1.08004 * 126.26022 * 180.26052 * 23 22 21 39 39 H 1.08000 * 126.26418 * 179.97438 * 24 23 22 40 40 H 1.07995 * 125.90513 * 179.97438 * 25 24 23 41 41 H 1.08000 * 119.96236 * 179.70688 * 26 20 19 42 42 H 1.07997 * 120.04109 * 180.27105 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1186 -1.4403 -0.0581 5 7 4.5837 -1.4397 -0.0575 6 6 5.3166 -1.3612 -1.3236 7 6 5.3925 -2.7317 -1.9458 8 1 4.9397 -3.5765 -1.4482 9 6 6.0400 -2.9070 -3.1504 10 7 6.5910 -1.8782 -3.7567 11 14 6.1335 -4.6056 -3.9220 12 1 5.4389 -5.5852 -3.0483 13 1 5.4789 -4.5806 -5.2547 14 1 7.5563 -5.0014 -4.0768 15 6 5.2571 -1.5112 1.1077 16 8 4.6542 -1.6889 2.1484 17 6 6.7271 -1.3737 1.1204 18 6 7.3703 -0.8339 2.2371 19 6 8.7415 -0.7066 2.2453 20 6 9.4857 -1.1140 1.1437 21 7 10.8777 -0.9837 1.1557 22 6 11.6215 -0.4740 2.1823 23 6 12.9197 -0.5126 1.8210 24 6 12.9827 -1.0648 0.5253 25 6 11.7206 -1.3441 0.1424 26 6 8.8485 -1.6459 0.0279 27 6 7.4782 -1.7815 0.0151 28 1 2.9711 0.4785 0.9099 29 1 2.9711 0.5501 -0.8686 30 1 2.7556 -1.9181 -0.9681 31 1 2.7556 -1.9898 0.8104 32 1 4.7992 -0.6825 -2.0016 33 1 6.3246 -0.9904 -1.1375 34 1 7.0468 -2.0016 -4.6039 35 1 6.7927 -0.5169 3.0930 36 1 9.2392 -0.2891 3.1080 37 1 11.2361 -0.1043 3.1210 38 1 13.7586 -0.1844 2.4169 39 1 13.8781 -1.2333 -0.0544 40 1 11.4265 -1.7770 -0.8023 41 1 9.4294 -1.9570 -0.8278 42 1 6.9843 -2.1988 -0.8500 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052818094.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:03 Heat of formation + Delta-G solvation = 96.232283 kcal Electronic energy + Delta-G solvation = -26179.817774 eV Core-core repulsion = 22513.072045 eV Total energy + Delta-G solvation = -3666.745729 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.54837 -39.95798 -37.93398 -36.67031 -35.53240 -33.47877 -32.87124 -31.50817 -30.76555 -28.79730 -28.73083 -27.58538 -24.64086 -23.56743 -22.68127 -22.52395 -20.16865 -19.88691 -19.14099 -18.29906 -17.57003 -16.89311 -16.65312 -15.80915 -14.97328 -14.88631 -14.83952 -14.70706 -14.64153 -14.30296 -13.95324 -13.61278 -13.51702 -13.29546 -13.05232 -12.61575 -12.50193 -12.36129 -12.25466 -12.20457 -12.16374 -11.95974 -11.67844 -11.38463 -11.15101 -11.05220 -10.71819 -10.41918 -10.08990 -9.99358 -9.66477 -9.30697 -8.93036 -8.57754 -8.24053 -8.07481 -7.80413 -6.45859 -4.56374 0.87056 1.59621 2.41527 2.80880 2.91326 2.92304 3.00140 3.07693 3.18503 3.21504 3.32889 3.56421 4.08999 4.17024 4.30725 4.82140 4.86380 4.91201 5.05265 5.12724 5.18328 5.27319 5.30996 5.36841 5.52575 5.60308 5.62474 5.72652 5.91360 5.99982 6.14999 6.20582 6.21375 6.29232 6.40236 6.44157 6.60096 6.74808 6.92289 6.94486 7.09209 7.23828 7.26920 7.49619 7.51543 7.67177 7.72603 8.03972 8.52530 8.72714 9.13284 10.58330 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010238 B = 0.004128 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2734.127175 B = 6780.906951 C = 8984.215350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.221 3.779 3 C -0.045 4.045 4 C 0.125 3.875 5 N -0.588 5.588 6 C 0.205 3.795 7 C -0.550 4.550 8 H 0.069 0.931 9 C 0.071 3.929 10 N -0.878 5.878 11 Si 0.895 3.105 12 H -0.269 1.269 13 H -0.280 1.280 14 H -0.279 1.279 15 C 0.562 3.438 16 O -0.564 6.564 17 C -0.147 4.147 18 C -0.041 4.041 19 C -0.166 4.166 20 C 0.151 3.849 21 N -0.393 5.393 22 C -0.017 4.017 23 C -0.196 4.196 24 C -0.198 4.198 25 C -0.008 4.008 26 C -0.151 4.151 27 C -0.065 4.065 28 H 0.108 0.892 29 H 0.113 0.887 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.039 0.961 33 H 0.069 0.931 34 H 0.270 0.730 35 H 0.134 0.866 36 H 0.128 0.872 37 H 0.163 0.837 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.167 0.833 41 H 0.132 0.868 42 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.294 3.687 6.550 11.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.097 4.097 3 C -0.087 4.087 4 C 0.000 4.000 5 N -0.318 5.318 6 C 0.086 3.914 7 C -0.588 4.588 8 H 0.087 0.913 9 C -0.135 4.135 10 N -0.514 5.514 11 Si 0.722 3.278 12 H -0.194 1.194 13 H -0.206 1.206 14 H -0.205 1.205 15 C 0.351 3.649 16 O -0.445 6.445 17 C -0.150 4.150 18 C -0.060 4.060 19 C -0.185 4.185 20 C 0.058 3.942 21 N -0.064 5.064 22 C -0.143 4.143 23 C -0.220 4.220 24 C -0.222 4.222 25 C -0.135 4.135 26 C -0.171 4.171 27 C -0.082 4.082 28 H 0.126 0.874 29 H 0.131 0.869 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.057 0.943 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.152 0.848 36 H 0.146 0.854 37 H 0.180 0.820 38 H 0.155 0.845 39 H 0.156 0.844 40 H 0.184 0.816 41 H 0.150 0.850 42 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 6.090 3.633 6.884 9.883 hybrid contribution 0.746 -0.782 -0.671 1.273 sum 6.836 2.851 6.213 9.667 Atomic orbital electron populations 1.81180 1.13062 1.08798 1.09620 1.29073 0.95091 0.92951 0.92560 1.19766 0.81396 1.01553 1.05966 1.21138 0.81166 0.93267 1.04454 1.48020 1.05445 1.70284 1.08002 1.20403 0.94001 0.97814 0.79205 1.21503 1.37091 0.94363 1.05832 0.91310 1.24988 0.94633 0.97491 0.96349 1.69922 1.34577 1.29936 1.17009 0.86462 0.78256 0.83680 0.79426 1.19360 1.20580 1.20504 1.18202 0.86916 0.76363 0.83408 1.90704 1.70024 1.51306 1.32480 1.19968 0.93665 1.05420 0.95995 1.20965 0.93031 0.95129 0.96888 1.20549 0.93905 1.06206 0.97859 1.18201 0.80570 0.99163 0.96254 1.41695 1.03888 1.46497 1.14323 1.21889 0.91206 1.06787 0.94465 1.20950 0.95526 1.07900 0.97598 1.20965 0.96264 1.07466 0.97476 1.22023 0.89484 1.07270 0.94749 1.20912 0.95507 1.03549 0.97133 1.23460 0.92945 0.92421 0.99374 0.87438 0.86907 0.88969 0.89691 0.94333 0.91362 0.92023 0.84767 0.85442 0.81966 0.84463 0.84372 0.81605 0.85025 0.77255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.33 18.54 42.15 0.78 -6.55 16 2 C 0.22 3.08 15.43 -20.76 -0.32 2.76 16 3 C -0.05 -0.56 6.03 -29.52 -0.18 -0.74 16 4 C 0.13 1.90 5.43 -4.04 -0.02 1.88 16 5 N -0.59 -10.41 2.47 -176.24 -0.43 -10.84 16 6 C 0.20 4.05 4.65 -5.19 -0.02 4.03 16 7 C -0.55 -12.18 7.47 -34.44 -0.26 -12.44 16 8 H 0.07 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.07 1.62 5.33 -17.82 -0.09 1.53 16 10 N -0.88 -20.87 13.29 55.43 0.74 -20.13 16 11 Si 0.89 18.38 29.54 -169.99 -5.02 13.36 16 12 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 13 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 14 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 15 C 0.56 10.39 7.45 -12.42 -0.09 10.30 16 16 O -0.56 -11.34 16.24 5.30 0.09 -11.25 16 17 C -0.15 -2.55 5.58 -104.95 -0.59 -3.14 16 18 C -0.04 -0.61 9.59 -39.22 -0.38 -0.98 16 19 C -0.17 -2.28 9.43 -39.47 -0.37 -2.65 16 20 C 0.15 2.25 6.62 -83.61 -0.55 1.70 16 21 N -0.39 -5.51 2.97 -60.89 -0.18 -5.69 16 22 C -0.02 -0.20 10.73 -16.63 -0.18 -0.38 16 23 C -0.20 -2.29 10.86 -39.76 -0.43 -2.72 16 24 C -0.20 -2.41 10.86 -39.75 -0.43 -2.84 16 25 C -0.01 -0.11 10.73 -16.62 -0.18 -0.29 16 26 C -0.15 -2.46 9.43 -39.47 -0.37 -2.83 16 27 C -0.06 -1.15 7.47 -39.22 -0.29 -1.45 16 28 H 0.11 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.11 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.09 1.41 8.08 -51.93 -0.42 0.99 16 31 H 0.08 1.33 7.31 -51.93 -0.38 0.95 16 32 H 0.04 0.79 8.13 -51.93 -0.42 0.37 16 33 H 0.07 1.39 4.07 -51.98 -0.21 1.18 16 34 H 0.27 6.17 8.31 -40.82 -0.34 5.83 16 35 H 0.13 1.83 7.92 -52.48 -0.42 1.41 16 36 H 0.13 1.40 6.68 -52.49 -0.35 1.05 16 37 H 0.16 1.56 6.99 -52.49 -0.37 1.19 16 38 H 0.14 1.28 8.06 -52.48 -0.42 0.86 16 39 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 40 H 0.17 1.96 6.99 -52.49 -0.37 1.60 16 41 H 0.13 2.02 6.68 -52.49 -0.35 1.67 16 42 H 0.21 4.23 3.01 -52.49 -0.16 4.07 16 LS Contribution 361.79 15.07 5.45 5.45 Total: -1.00 -26.91 361.79 -8.02 -34.93 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -4.68 Total: 8.99 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -4.76 Total: -8.27 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: 0.90 Total: -43.21 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.02 Total: 13.36 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -26.91 -8.02 -34.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052818094.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.159 kcal (2) G-P(sol) polarization free energy of solvation -26.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds