Wall clock time and date at job start Tue Mar 31 2020 14:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47506 * 356.46997 * 3 2 1 5 5 N 1.46495 * 109.47362 * 179.97438 * 4 3 2 6 6 C 1.46504 * 120.00337 * 264.47990 * 5 4 3 7 7 C 1.50695 * 109.47054 * 73.96132 * 6 5 4 8 8 H 1.08004 * 120.00150 * 0.02562 * 7 6 5 9 9 C 1.37882 * 120.00227 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00051 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 119.99545 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47039 * 90.00421 * 11 9 7 13 13 H 1.48496 * 109.47012 * 209.99809 * 11 9 7 14 14 H 1.48498 * 109.47302 * 330.00493 * 11 9 7 15 15 C 1.34773 * 119.99783 * 84.48173 * 5 4 3 16 16 O 1.21545 * 120.00421 * 3.15467 * 15 5 4 17 17 C 1.47867 * 119.99832 * 183.15299 * 15 5 4 18 18 C 1.39611 * 120.11236 * 27.38864 * 17 15 5 19 19 C 1.37980 * 119.98244 * 179.78717 * 18 17 15 20 20 C 1.38259 * 120.21918 * 0.46795 * 19 18 17 21 21 C 1.38915 * 120.22680 * 359.78889 * 20 19 18 22 22 N 1.40226 * 119.99203 * 179.97438 * 21 20 19 23 23 C 1.36566 * 125.66379 * 179.66626 * 22 21 20 24 24 C 1.34846 * 108.19772 * 179.88769 * 23 22 21 25 25 C 1.40944 * 107.47039 * 0.37203 * 24 23 22 26 26 C 1.34853 * 107.46436 * 359.76953 * 25 24 23 27 27 C 1.38588 * 120.00973 * 359.97343 * 21 20 19 28 28 H 1.09004 * 109.47273 * 236.47091 * 3 2 1 29 29 H 1.09004 * 109.47582 * 116.47093 * 3 2 1 30 30 H 1.08997 * 109.47103 * 300.00681 * 4 3 2 31 31 H 1.09010 * 109.46832 * 60.00194 * 4 3 2 32 32 H 1.08999 * 109.47278 * 193.96302 * 6 5 4 33 33 H 1.09003 * 109.46998 * 313.96162 * 6 5 4 34 34 H 0.97003 * 119.99498 * 179.97438 * 10 9 7 35 35 H 1.07999 * 120.01027 * 0.02562 * 18 17 15 36 36 H 1.08002 * 119.88827 * 180.21104 * 19 18 17 37 37 H 1.07995 * 119.88859 * 179.76124 * 20 19 18 38 38 H 1.08003 * 125.90224 * 0.02562 * 23 22 21 39 39 H 1.08005 * 126.26879 * 180.15787 * 24 23 22 40 40 H 1.07993 * 126.26516 * 179.78795 * 25 24 23 41 41 H 1.08002 * 125.89865 * 179.97438 * 26 25 24 42 42 H 1.07998 * 120.10310 * 180.02562 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1187 -1.4389 0.0888 5 7 4.5836 -1.4382 0.0882 6 6 5.3158 -1.6376 -1.1650 7 6 5.2261 -0.3886 -2.0034 8 1 4.6788 0.4682 -1.6390 9 6 5.8427 -0.3397 -3.2357 10 7 5.7640 0.7502 -3.9675 11 14 6.7898 -1.8215 -3.8656 12 1 5.8753 -2.7028 -4.6351 13 1 7.8946 -1.3648 -4.7465 14 1 7.3522 -2.5747 -2.7160 15 6 5.2578 -1.2542 1.2406 16 8 4.6519 -1.1461 2.2887 17 6 6.7348 -1.1838 1.2298 18 6 7.4066 -0.7399 0.0893 19 6 8.7847 -0.6711 0.0837 20 6 9.5048 -1.0498 1.2016 21 6 8.8457 -1.4979 2.3393 22 7 9.5811 -1.8813 3.4701 23 6 9.0547 -2.3311 4.6473 24 6 10.0736 -2.6004 5.4885 25 6 11.2724 -2.2989 4.8113 26 6 10.9422 -1.8612 3.5793 27 6 7.4616 -1.5661 2.3570 28 1 2.9710 0.5685 0.8567 29 1 2.9711 0.4589 -0.9199 30 1 2.7555 -1.8971 1.0087 31 1 2.7556 -2.0067 -0.7680 32 1 6.3613 -1.8531 -0.9447 33 1 4.8798 -2.4741 -1.7114 34 1 6.1981 0.7847 -4.8343 35 1 6.8476 -0.4467 -0.7870 36 1 9.3026 -0.3242 -0.7982 37 1 10.5834 -0.9975 1.1900 38 1 8.0040 -2.4524 4.8658 39 1 9.9869 -2.9750 6.4978 40 1 12.2722 -2.4002 5.2067 41 1 11.6346 -1.5484 2.8117 42 1 6.9477 -1.9139 3.2409 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052818114.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:06 Heat of formation + Delta-G solvation = 99.058401 kcal Electronic energy + Delta-G solvation = -26357.732053 eV Core-core repulsion = 22691.108874 eV Total energy + Delta-G solvation = -3666.623179 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.61193 -40.10781 -38.07259 -36.58777 -35.64251 -33.42475 -32.83972 -31.70113 -30.82154 -28.88845 -28.77382 -28.12327 -24.86834 -23.26549 -22.76168 -22.48620 -20.45681 -19.98036 -19.27490 -18.13625 -17.68146 -16.77841 -16.52522 -15.97882 -15.71710 -15.06854 -14.86493 -14.66860 -14.55817 -14.33687 -13.89754 -13.80782 -13.49929 -13.23610 -13.16463 -12.84892 -12.60974 -12.42205 -12.33489 -12.23347 -12.14914 -12.01809 -11.65505 -11.50915 -11.20019 -11.08634 -10.70374 -10.53342 -10.32963 -9.84496 -9.66270 -9.43608 -9.00393 -8.93839 -8.29230 -8.14772 -7.87467 -6.50114 -4.55726 0.92116 1.17181 2.43728 2.80111 2.92606 2.94922 3.00785 3.06930 3.09002 3.12891 3.19893 3.46676 3.98592 4.02633 4.40663 4.69017 4.76744 4.78470 4.98079 5.05802 5.11580 5.24871 5.35028 5.39848 5.45462 5.54985 5.57584 5.74989 5.83526 5.93636 6.00534 6.07608 6.12832 6.16347 6.28873 6.30792 6.48275 6.58142 6.60760 6.87183 6.90794 6.96532 7.16451 7.18050 7.44064 7.74260 7.81806 8.10571 8.49590 8.57704 9.06121 10.59829 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011331 B = 0.004177 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.607823 B = 6701.909262 C = 8749.119885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.224 3.776 3 C -0.052 4.052 4 C 0.135 3.865 5 N -0.581 5.581 6 C 0.179 3.821 7 C -0.556 4.556 8 H 0.091 0.909 9 C 0.086 3.914 10 N -0.873 5.873 11 Si 0.860 3.140 12 H -0.270 1.270 13 H -0.280 1.280 14 H -0.258 1.258 15 C 0.561 3.439 16 O -0.555 6.555 17 C -0.107 4.107 18 C -0.103 4.103 19 C -0.109 4.109 20 C -0.117 4.117 21 C 0.108 3.892 22 N -0.390 5.390 23 C -0.012 4.012 24 C -0.198 4.198 25 C -0.197 4.197 26 C -0.016 4.016 27 C -0.085 4.085 28 H 0.107 0.893 29 H 0.132 0.868 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.030 0.970 34 H 0.271 0.729 35 H 0.200 0.800 36 H 0.136 0.864 37 H 0.128 0.872 38 H 0.164 0.836 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.163 0.837 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.382 -5.209 8.834 13.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.134 5.134 2 C -0.094 4.094 3 C -0.093 4.093 4 C 0.011 3.989 5 N -0.310 5.310 6 C 0.059 3.941 7 C -0.593 4.593 8 H 0.108 0.892 9 C -0.121 4.121 10 N -0.508 5.508 11 Si 0.686 3.314 12 H -0.195 1.195 13 H -0.205 1.205 14 H -0.183 1.183 15 C 0.350 3.650 16 O -0.436 6.436 17 C -0.110 4.110 18 C -0.120 4.120 19 C -0.127 4.127 20 C -0.137 4.137 21 C 0.016 3.984 22 N -0.061 5.061 23 C -0.140 4.140 24 C -0.222 4.222 25 C -0.221 4.221 26 C -0.144 4.144 27 C -0.105 4.105 28 H 0.125 0.875 29 H 0.150 0.850 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.079 0.921 33 H 0.048 0.952 34 H 0.082 0.918 35 H 0.216 0.784 36 H 0.154 0.846 37 H 0.145 0.855 38 H 0.182 0.818 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.180 0.820 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.249 -4.995 8.925 12.536 hybrid contribution 1.121 -0.622 -0.598 1.415 sum 8.370 -5.617 8.327 13.075 Atomic orbital electron populations 1.81151 1.13136 1.08972 1.10167 1.29204 0.95184 0.92790 0.92172 1.19951 0.81007 1.00946 1.07362 1.21087 0.80163 0.94414 1.03274 1.47736 1.05764 1.69025 1.08502 1.20706 0.93966 0.98041 0.81402 1.21345 1.36193 0.99813 1.01975 0.89159 1.24889 0.95464 0.95693 0.96063 1.69864 1.42067 1.26954 1.11949 0.87071 0.80656 0.83444 0.80234 1.19541 1.20494 1.18262 1.18183 0.86833 0.76551 0.83473 1.90721 1.69886 1.51818 1.31145 1.19743 0.93456 1.03329 0.94520 1.23406 0.95337 0.93384 0.99905 1.21111 0.94343 0.99574 0.97717 1.20989 1.00127 1.00401 0.92189 1.17644 0.90863 1.02894 0.86965 1.41632 1.05980 1.48364 1.10077 1.21956 0.99680 1.06663 0.85696 1.20939 0.92122 1.08876 1.00226 1.20933 0.98634 1.07970 0.94539 1.21865 0.83029 1.09360 1.00122 1.20764 0.90948 1.00061 0.98722 0.87471 0.85016 0.90222 0.89369 0.92102 0.95203 0.91825 0.78410 0.84621 0.85455 0.81829 0.84409 0.84450 0.81977 0.84721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.03 18.54 42.15 0.78 -7.25 16 2 C 0.22 3.48 15.43 -20.76 -0.32 3.16 16 3 C -0.05 -0.75 5.79 -29.52 -0.17 -0.92 16 4 C 0.14 2.02 5.24 -4.04 -0.02 2.00 16 5 N -0.58 -9.89 2.52 -176.17 -0.44 -10.33 16 6 C 0.18 3.28 3.70 -5.19 -0.02 3.26 16 7 C -0.56 -11.80 7.48 -34.44 -0.26 -12.06 16 8 H 0.09 2.06 6.09 -52.48 -0.32 1.74 16 9 C 0.09 1.95 5.43 -17.82 -0.10 1.85 16 10 N -0.87 -21.87 13.96 55.43 0.77 -21.09 16 11 Si 0.86 17.02 27.47 -169.99 -4.67 12.35 16 12 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 13 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 14 H -0.26 -4.77 6.54 56.52 0.37 -4.40 16 15 C 0.56 9.97 7.43 -12.32 -0.09 9.88 16 16 O -0.56 -10.75 16.31 5.33 0.09 -10.66 16 17 C -0.11 -1.78 5.51 -104.99 -0.58 -2.36 16 18 C -0.10 -1.70 7.42 -39.16 -0.29 -1.99 16 19 C -0.11 -1.54 10.02 -39.67 -0.40 -1.94 16 20 C -0.12 -1.53 9.45 -39.32 -0.37 -1.90 16 21 C 0.11 1.53 6.61 -83.64 -0.55 0.98 16 22 N -0.39 -5.20 2.97 -60.96 -0.18 -5.38 16 23 C -0.01 -0.16 10.73 -16.65 -0.18 -0.33 16 24 C -0.20 -2.29 10.86 -39.76 -0.43 -2.72 16 25 C -0.20 -2.21 10.86 -39.76 -0.43 -2.64 16 26 C -0.02 -0.19 10.73 -16.65 -0.18 -0.37 16 27 C -0.08 -1.29 8.99 -39.00 -0.35 -1.64 16 28 H 0.11 1.54 8.14 -51.93 -0.42 1.11 16 29 H 0.13 2.06 6.02 -51.93 -0.31 1.75 16 30 H 0.08 1.16 7.55 -51.93 -0.39 0.77 16 31 H 0.09 1.22 8.02 -51.92 -0.42 0.81 16 32 H 0.06 1.12 3.24 -51.93 -0.17 0.95 16 33 H 0.03 0.54 7.55 -51.93 -0.39 0.15 16 34 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 35 H 0.20 3.66 3.35 -52.49 -0.18 3.48 16 36 H 0.14 1.68 8.06 -52.49 -0.42 1.25 16 37 H 0.13 1.32 6.69 -52.49 -0.35 0.96 16 38 H 0.16 1.80 7.01 -52.48 -0.37 1.44 16 39 H 0.14 1.30 8.06 -52.48 -0.42 0.88 16 40 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 41 H 0.16 1.48 7.00 -52.49 -0.37 1.11 16 42 H 0.14 1.97 6.53 -52.49 -0.34 1.63 16 LS Contribution 353.91 15.07 5.33 5.33 Total: -1.00 -26.98 353.91 -7.52 -34.50 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -4.46 Total: 10.29 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -4.74 Total: -7.76 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: 0.93 Total: -44.06 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 17.02 SS G_CDS: -4.67 Total: 12.35 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -26.98 -7.52 -34.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052818114.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.563 kcal (2) G-P(sol) polarization free energy of solvation -26.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds