Wall clock time and date at job start Tue Mar 31 2020 14:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47506 * 356.46997 * 3 2 1 5 5 N 1.46495 * 109.47362 * 179.97438 * 4 3 2 6 6 C 1.46504 * 120.00337 * 264.47990 * 5 4 3 7 7 C 1.50695 * 109.47054 * 73.96132 * 6 5 4 8 8 H 1.08004 * 120.00150 * 0.02562 * 7 6 5 9 9 C 1.37882 * 120.00227 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00051 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 119.99545 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47039 * 90.00421 * 11 9 7 13 13 H 1.48496 * 109.47012 * 209.99809 * 11 9 7 14 14 H 1.48498 * 109.47302 * 330.00493 * 11 9 7 15 15 C 1.34773 * 119.99783 * 84.48173 * 5 4 3 16 16 O 1.21545 * 120.00421 * 3.15467 * 15 5 4 17 17 C 1.47867 * 119.99832 * 183.15299 * 15 5 4 18 18 C 1.39611 * 120.11236 * 27.38864 * 17 15 5 19 19 C 1.37980 * 119.98244 * 179.78717 * 18 17 15 20 20 C 1.38259 * 120.21918 * 0.46795 * 19 18 17 21 21 C 1.38915 * 120.22680 * 359.78889 * 20 19 18 22 22 N 1.40226 * 119.99203 * 179.97438 * 21 20 19 23 23 C 1.36566 * 125.66379 * 179.66626 * 22 21 20 24 24 C 1.34846 * 108.19772 * 179.88769 * 23 22 21 25 25 C 1.40944 * 107.47039 * 0.37203 * 24 23 22 26 26 C 1.34853 * 107.46436 * 359.76953 * 25 24 23 27 27 C 1.38588 * 120.00973 * 359.97343 * 21 20 19 28 28 H 1.09004 * 109.47273 * 236.47091 * 3 2 1 29 29 H 1.09004 * 109.47582 * 116.47093 * 3 2 1 30 30 H 1.08997 * 109.47103 * 300.00681 * 4 3 2 31 31 H 1.09010 * 109.46832 * 60.00194 * 4 3 2 32 32 H 1.08999 * 109.47278 * 193.96302 * 6 5 4 33 33 H 1.09003 * 109.46998 * 313.96162 * 6 5 4 34 34 H 0.97003 * 119.99498 * 179.97438 * 10 9 7 35 35 H 1.07999 * 120.01027 * 0.02562 * 18 17 15 36 36 H 1.08002 * 119.88827 * 180.21104 * 19 18 17 37 37 H 1.07995 * 119.88859 * 179.76124 * 20 19 18 38 38 H 1.08003 * 125.90224 * 0.02562 * 23 22 21 39 39 H 1.08005 * 126.26879 * 180.15787 * 24 23 22 40 40 H 1.07993 * 126.26516 * 179.78795 * 25 24 23 41 41 H 1.08002 * 125.89865 * 179.97438 * 26 25 24 42 42 H 1.07998 * 120.10310 * 180.02562 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1187 -1.4389 0.0888 5 7 4.5836 -1.4382 0.0882 6 6 5.3158 -1.6376 -1.1650 7 6 5.2261 -0.3886 -2.0034 8 1 4.6788 0.4682 -1.6390 9 6 5.8427 -0.3397 -3.2357 10 7 5.7640 0.7502 -3.9675 11 14 6.7898 -1.8215 -3.8656 12 1 5.8753 -2.7028 -4.6351 13 1 7.8946 -1.3648 -4.7465 14 1 7.3522 -2.5747 -2.7160 15 6 5.2578 -1.2542 1.2406 16 8 4.6519 -1.1461 2.2887 17 6 6.7348 -1.1838 1.2298 18 6 7.4066 -0.7399 0.0893 19 6 8.7847 -0.6711 0.0837 20 6 9.5048 -1.0498 1.2016 21 6 8.8457 -1.4979 2.3393 22 7 9.5811 -1.8813 3.4701 23 6 9.0547 -2.3311 4.6473 24 6 10.0736 -2.6004 5.4885 25 6 11.2724 -2.2989 4.8113 26 6 10.9422 -1.8612 3.5793 27 6 7.4616 -1.5661 2.3570 28 1 2.9710 0.5685 0.8567 29 1 2.9711 0.4589 -0.9199 30 1 2.7555 -1.8971 1.0087 31 1 2.7556 -2.0067 -0.7680 32 1 6.3613 -1.8531 -0.9447 33 1 4.8798 -2.4741 -1.7114 34 1 6.1981 0.7847 -4.8343 35 1 6.8476 -0.4467 -0.7870 36 1 9.3026 -0.3242 -0.7982 37 1 10.5834 -0.9975 1.1900 38 1 8.0040 -2.4524 4.8658 39 1 9.9869 -2.9750 6.4978 40 1 12.2722 -2.4002 5.2067 41 1 11.6346 -1.5484 2.8117 42 1 6.9477 -1.9139 3.2409 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052818114.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:05 Heat of formation + Delta-G solvation = 87.693637 kcal Electronic energy + Delta-G solvation = -26358.224866 eV Core-core repulsion = 22691.108874 eV Total energy + Delta-G solvation = -3667.115992 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.56320 -41.39798 -39.24578 -37.94972 -37.07111 -34.75401 -34.24403 -32.91715 -32.03224 -30.08770 -29.77879 -29.45963 -26.10647 -24.65637 -23.97375 -23.71313 -21.51766 -20.92823 -20.35828 -19.45365 -19.07522 -18.20342 -17.77852 -17.27235 -16.94720 -16.39380 -16.01486 -15.91975 -15.82528 -15.57020 -15.09897 -14.89699 -14.62640 -14.57907 -14.44903 -14.22823 -13.93477 -13.68555 -13.51978 -13.31252 -13.19940 -13.08197 -12.96447 -12.86412 -12.61851 -12.40608 -12.03288 -11.96378 -11.69599 -11.38043 -10.96259 -10.80944 -10.56950 -10.11005 -9.56982 -9.17820 -8.92779 -8.24150 -6.31051 -0.22379 0.04938 1.40170 1.44822 1.51535 1.55677 1.63868 1.76093 1.80290 1.94351 2.09177 2.16759 2.39017 2.80307 3.09077 3.11594 3.48566 3.73128 3.94677 4.05899 4.14356 4.14868 4.15815 4.31707 4.36776 4.52648 4.56861 4.64138 4.69588 4.75616 4.86147 4.86314 4.93734 5.01814 5.09382 5.33533 5.36163 5.40334 5.42890 5.45969 5.62514 5.78498 6.01515 6.17356 6.27287 6.48761 6.51697 6.54717 6.80516 7.13396 7.34586 8.88767 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011331 B = 0.004177 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.607823 B = 6701.909262 C = 8749.119885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C 0.246 3.754 3 C -0.037 4.037 4 C 0.131 3.869 5 N -0.581 5.581 6 C 0.184 3.816 7 C -0.539 4.539 8 H 0.066 0.934 9 C 0.041 3.959 10 N -0.925 5.925 11 Si 0.911 3.089 12 H -0.274 1.274 13 H -0.286 1.286 14 H -0.234 1.234 15 C 0.559 3.441 16 O -0.576 6.576 17 C -0.121 4.121 18 C -0.121 4.121 19 C -0.106 4.106 20 C -0.107 4.107 21 C 0.111 3.889 22 N -0.402 5.402 23 C -0.038 4.038 24 C -0.200 4.200 25 C -0.202 4.202 26 C -0.025 4.025 27 C -0.092 4.092 28 H 0.111 0.889 29 H 0.122 0.878 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.040 0.960 34 H 0.269 0.731 35 H 0.179 0.821 36 H 0.155 0.845 37 H 0.161 0.839 38 H 0.169 0.831 39 H 0.156 0.844 40 H 0.161 0.839 41 H 0.189 0.811 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.708 -6.588 9.774 16.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.165 5.165 2 C -0.071 4.071 3 C -0.078 4.078 4 C 0.007 3.993 5 N -0.309 5.309 6 C 0.063 3.937 7 C -0.577 4.577 8 H 0.084 0.916 9 C -0.160 4.160 10 N -0.563 5.563 11 Si 0.735 3.265 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.157 1.157 15 C 0.348 3.652 16 O -0.458 6.458 17 C -0.125 4.125 18 C -0.138 4.138 19 C -0.125 4.125 20 C -0.127 4.127 21 C 0.019 3.981 22 N -0.073 5.073 23 C -0.164 4.164 24 C -0.224 4.224 25 C -0.226 4.226 26 C -0.152 4.152 27 C -0.113 4.113 28 H 0.129 0.871 29 H 0.139 0.861 30 H 0.105 0.895 31 H 0.119 0.881 32 H 0.089 0.911 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.196 0.804 36 H 0.173 0.827 37 H 0.179 0.821 38 H 0.186 0.814 39 H 0.174 0.826 40 H 0.178 0.822 41 H 0.206 0.794 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 9.577 -6.397 9.896 15.185 hybrid contribution 0.460 -0.171 -0.733 0.882 sum 10.037 -6.568 9.164 15.095 Atomic orbital electron populations 1.81173 1.14006 1.10073 1.11268 1.29196 0.95004 0.91759 0.91134 1.19812 0.80252 1.00886 1.06894 1.21237 0.79233 0.94606 1.04249 1.47726 1.06446 1.68771 1.07959 1.20597 0.94904 0.96732 0.81459 1.21463 1.34341 1.00070 1.01781 0.91593 1.25495 0.96494 0.97632 0.96417 1.69993 1.44395 1.29298 1.12605 0.86260 0.79325 0.80739 0.80223 1.19906 1.21139 1.15682 1.18438 0.87515 0.75983 0.83230 1.90700 1.70483 1.52901 1.31742 1.19680 0.92764 1.04732 0.95316 1.23155 0.96453 0.95053 0.99170 1.21327 0.93427 0.98855 0.98863 1.21296 1.01717 0.98651 0.90991 1.17772 0.90568 1.02033 0.87720 1.41756 1.06618 1.49058 1.09916 1.22255 1.00461 1.07635 0.86057 1.21305 0.92139 1.07997 1.00933 1.21323 0.99563 1.07309 0.94429 1.22425 0.82630 1.08973 1.01126 1.20780 0.91732 1.00461 0.98306 0.87139 0.86057 0.89530 0.88097 0.91132 0.94162 0.92176 0.80441 0.82712 0.82141 0.81401 0.82647 0.82183 0.79424 0.84804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -17.03 18.54 20.00 0.37 -16.66 16 2 C 0.25 7.59 15.43 89.44 1.38 8.97 16 3 C -0.04 -1.09 5.79 28.79 0.17 -0.92 16 4 C 0.13 3.83 5.24 86.38 0.45 4.28 16 5 N -0.58 -19.45 2.52 -829.55 -2.09 -21.55 16 6 C 0.18 6.56 3.70 85.63 0.32 6.88 16 7 C -0.54 -22.96 7.48 25.60 0.19 -22.77 16 8 H 0.07 3.10 6.09 -2.91 -0.02 3.08 16 9 C 0.04 1.89 5.43 84.66 0.46 2.35 16 10 N -0.92 -47.41 13.96 21.45 0.30 -47.11 16 11 Si 0.91 34.28 27.47 68.60 1.88 36.16 16 12 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 13 H -0.29 -10.99 7.11 99.48 0.71 -10.28 16 14 H -0.23 -7.79 6.54 99.48 0.65 -7.14 16 15 C 0.56 19.72 7.43 86.79 0.65 20.37 16 16 O -0.58 -22.27 16.31 -3.86 -0.06 -22.33 16 17 C -0.12 -3.98 5.51 -20.10 -0.11 -4.09 16 18 C -0.12 -3.85 7.42 22.54 0.17 -3.68 16 19 C -0.11 -2.76 10.02 22.21 0.22 -2.54 16 20 C -0.11 -2.46 9.45 22.44 0.21 -2.24 16 21 C 0.11 2.92 6.61 38.04 0.25 3.17 16 22 N -0.40 -9.80 2.97 -346.78 -1.03 -10.83 16 23 C -0.04 -0.89 10.73 83.18 0.89 0.01 16 24 C -0.20 -4.18 10.86 22.15 0.24 -3.94 16 25 C -0.20 -3.93 10.86 22.15 0.24 -3.69 16 26 C -0.03 -0.51 10.73 83.18 0.89 0.38 16 27 C -0.09 -2.74 8.99 22.65 0.20 -2.54 16 28 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 29 H 0.12 3.88 6.02 -2.38 -0.01 3.87 16 30 H 0.09 2.45 7.55 -2.39 -0.02 2.43 16 31 H 0.10 2.69 8.02 -2.38 -0.02 2.67 16 32 H 0.07 2.48 3.24 -2.39 -0.01 2.47 16 33 H 0.04 1.38 7.55 -2.39 -0.02 1.36 16 34 H 0.27 13.15 8.31 -92.71 -0.77 12.38 16 35 H 0.18 6.48 3.35 -2.91 -0.01 6.47 16 36 H 0.16 3.37 8.06 -2.91 -0.02 3.35 16 37 H 0.16 2.57 6.69 -2.91 -0.02 2.55 16 38 H 0.17 3.60 7.01 -2.91 -0.02 3.58 16 39 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 40 H 0.16 2.28 8.06 -2.91 -0.02 2.25 16 41 H 0.19 2.61 7.00 -2.91 -0.02 2.59 16 42 H 0.13 3.90 6.53 -2.91 -0.02 3.88 16 Total: -1.00 -58.05 353.91 7.21 -50.83 By element: Atomic # 1 Polarization: 30.46 SS G_CDS: 1.02 Total: 31.49 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 6.83 Total: 0.00 kcal Atomic # 7 Polarization: -93.69 SS G_CDS: -2.45 Total: -96.15 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.06 Total: -22.33 kcal Atomic # 14 Polarization: 34.28 SS G_CDS: 1.88 Total: 36.16 kcal Total: -58.05 7.21 -50.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052818114.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.526 kcal (2) G-P(sol) polarization free energy of solvation -58.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds