Wall clock time and date at job start Tue Mar 31 2020 14:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34812 * 125.90745 * 2 1 4 4 C 1.40985 * 107.48102 * 180.27305 * 3 2 1 5 5 C 1.34813 * 107.48642 * 359.73529 * 4 3 2 6 6 C 1.50695 * 125.90392 * 180.02562 * 5 4 3 7 7 N 1.36641 * 108.19246 * 359.97438 * 5 4 3 8 8 C 1.39799 * 125.67794 * 180.02562 * 7 5 4 9 9 C 1.39079 * 119.91558 * 114.99878 * 8 7 5 10 10 C 1.37687 * 120.08781 * 180.27902 * 9 8 7 11 11 C 1.39793 * 119.91195 * 359.45088 * 10 9 8 12 12 C 1.47527 * 120.08640 * 180.27698 * 11 10 9 13 13 O 1.21610 * 119.99975 * 140.55786 * 12 11 10 14 14 N 1.34783 * 119.99975 * 320.55804 * 12 11 10 15 15 C 1.36884 * 119.99867 * 186.55766 * 14 12 11 16 16 H 1.08003 * 120.00169 * 344.90749 * 15 14 12 17 17 C 1.39031 * 119.99636 * 164.90715 * 15 14 12 18 18 N 1.31375 * 120.00520 * 37.37335 * 17 15 14 19 19 Si 1.86806 * 119.99794 * 217.37820 * 17 15 14 20 20 H 1.48495 * 109.47473 * 59.99521 * 19 17 15 21 21 H 1.48500 * 109.47210 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46996 * 299.99663 * 19 17 15 23 23 C 1.46498 * 119.99807 * 6.56129 * 14 12 11 24 24 C 1.47203 * 109.47000 * 109.54023 * 23 14 12 25 25 N 7.97850 * 71.33804 * 147.95999 * 2 1 3 26 26 C 1.39791 * 119.82915 * 0.56694 * 11 10 9 27 27 C 1.37691 * 119.91125 * 359.70980 * 26 11 10 28 28 H 1.08996 * 109.47272 * 270.17586 * 1 2 3 29 29 H 1.08998 * 109.46856 * 30.17572 * 1 2 3 30 30 H 1.09007 * 109.47611 * 150.17272 * 1 2 3 31 31 H 1.07993 * 126.25799 * 359.97438 * 3 2 1 32 32 H 1.08001 * 126.25838 * 179.71033 * 4 3 2 33 33 H 1.08999 * 109.47525 * 269.97275 * 6 5 4 34 34 H 1.08995 * 109.47324 * 29.97406 * 6 5 4 35 35 H 1.09005 * 109.47249 * 149.97736 * 6 5 4 36 36 H 1.08000 * 119.95610 * 359.97438 * 9 8 7 37 37 H 1.08000 * 120.04945 * 179.72351 * 10 9 8 38 38 H 0.97000 * 120.00220 * 180.02562 * 18 17 15 39 39 H 1.08993 * 109.47322 * 229.54113 * 23 14 12 40 40 H 1.09002 * 109.47251 * 349.53869 * 23 14 12 41 41 H 1.07999 * 120.04232 * 179.68035 * 26 11 10 42 42 H 1.08002 * 119.95094 * 179.97438 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2976 1.0919 0.0000 4 6 3.6352 0.6463 -0.0064 5 6 3.6131 -0.7016 -0.0042 6 6 4.8190 -1.6052 -0.0086 7 7 2.3082 -1.1069 0.0040 8 6 1.8663 -2.4332 0.0092 9 6 1.1699 -2.9281 1.1067 10 6 0.7382 -4.2354 1.1179 11 6 0.9905 -5.0624 0.0195 12 6 0.5243 -6.4621 0.0249 13 8 0.0726 -6.9564 -0.9902 14 7 0.5989 -7.1929 1.1549 15 6 0.2934 -8.5269 1.1287 16 1 -0.2339 -8.9436 0.2833 17 6 0.6620 -9.3454 2.1903 18 7 0.6052 -8.8902 3.4214 19 14 1.2384 -11.0926 1.8663 20 1 2.4442 -11.0635 1.0002 21 1 1.5698 -11.7516 3.1552 22 1 0.1586 -11.8519 1.1860 23 6 1.0070 -6.5594 2.4113 24 6 -0.1511 -6.4728 3.3159 25 7 -1.0460 -6.4076 4.0101 26 6 1.6911 -4.5615 -1.0816 27 6 2.1246 -3.2546 -1.0829 28 1 -0.3633 0.0032 1.0276 29 1 -0.3633 0.8884 -0.5166 30 1 -0.3634 -0.8916 -0.5112 31 1 1.9669 2.1200 -0.0004 32 1 4.5164 1.2706 -0.0125 33 1 5.1045 -1.8252 -1.0373 34 1 5.6461 -1.1099 0.5000 35 1 4.5788 -2.5344 0.5083 36 1 0.9719 -2.2874 1.9533 37 1 0.2013 -4.6203 1.9724 38 1 0.8627 -9.4612 4.1620 39 1 1.7907 -7.1541 2.8803 40 1 1.3843 -5.5573 2.2072 41 1 1.8925 -5.1989 -1.9299 42 1 2.6663 -2.8670 -1.9331 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072059762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:21 Heat of formation + Delta-G solvation = 89.395045 kcal Electronic energy + Delta-G solvation = -26533.187191 eV Core-core repulsion = 22866.144977 eV Total energy + Delta-G solvation = -3667.042214 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.65806 -41.30215 -39.19161 -37.78157 -36.20750 -34.52983 -33.70238 -33.52489 -32.21436 -30.27574 -29.97107 -29.24235 -27.02576 -25.02482 -24.45090 -23.94376 -21.50462 -21.17845 -20.48611 -20.03974 -18.51859 -18.04309 -17.73144 -17.12484 -16.69634 -16.10214 -16.04548 -15.71880 -15.39355 -15.13921 -14.85336 -14.70720 -14.52210 -14.32303 -14.09248 -14.00635 -13.94077 -13.50961 -13.43139 -13.34999 -13.24704 -13.09367 -13.08242 -12.94692 -12.71806 -12.41457 -12.34371 -12.27156 -12.12981 -11.97731 -10.91353 -10.67494 -10.25047 -10.18364 -10.09623 -9.40394 -8.72242 -8.67212 -5.95041 -0.34872 0.18152 1.22870 1.35318 1.45145 1.53146 1.72845 1.90436 1.96571 2.09594 2.15827 2.28656 2.54555 2.73549 3.04746 3.54103 3.67035 3.74282 3.80238 3.85027 4.14362 4.15831 4.28062 4.34570 4.36629 4.52881 4.56558 4.64453 4.75523 4.80508 4.81487 4.86204 4.92660 5.00775 5.12043 5.14269 5.18291 5.28110 5.38180 5.38436 5.49504 5.58741 5.91088 6.17340 6.27838 6.32145 6.59867 6.93652 6.99489 7.20433 7.79746 8.37529 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020024 B = 0.003272 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.984306 B = 8554.595165 C = 8863.682870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.003 3.997 3 C -0.204 4.204 4 C -0.205 4.205 5 C 0.008 3.992 6 C -0.084 4.084 7 N -0.408 5.408 8 C 0.124 3.876 9 C -0.101 4.101 10 C -0.100 4.100 11 C -0.102 4.102 12 C 0.475 3.525 13 O -0.615 6.615 14 N -0.434 5.434 15 C -0.373 4.373 16 H 0.085 0.915 17 C 0.032 3.968 18 N -0.854 5.854 19 Si 0.973 3.027 20 H -0.265 1.265 21 H -0.272 1.272 22 H -0.279 1.279 23 C 0.193 3.807 24 C 0.263 3.737 25 N -0.497 5.497 26 C -0.061 4.061 27 C -0.099 4.099 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.054 0.946 31 H 0.151 0.849 32 H 0.153 0.847 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.059 0.941 36 H 0.147 0.853 37 H 0.135 0.865 38 H 0.284 0.716 39 H 0.119 0.881 40 H 0.144 0.856 41 H 0.140 0.860 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.111 16.945 -3.709 20.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.105 4.105 3 C -0.228 4.228 4 C -0.229 4.229 5 C -0.100 4.100 6 C -0.142 4.142 7 N -0.083 5.083 8 C 0.034 3.966 9 C -0.120 4.120 10 C -0.119 4.119 11 C -0.105 4.105 12 C 0.266 3.734 13 O -0.503 6.503 14 N -0.152 5.152 15 C -0.499 4.499 16 H 0.102 0.898 17 C -0.176 4.176 18 N -0.489 5.489 19 Si 0.797 3.203 20 H -0.190 1.190 21 H -0.197 1.197 22 H -0.204 1.204 23 C 0.067 3.933 24 C -0.054 4.054 25 N -0.178 5.178 26 C -0.080 4.080 27 C -0.118 4.118 28 H 0.095 0.905 29 H 0.113 0.887 30 H 0.073 0.927 31 H 0.169 0.831 32 H 0.170 0.830 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.078 0.922 36 H 0.164 0.836 37 H 0.153 0.847 38 H 0.095 0.905 39 H 0.137 0.863 40 H 0.161 0.839 41 H 0.158 0.842 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 8.491 16.392 -2.916 18.689 hybrid contribution 0.056 -1.376 -0.128 1.383 sum 8.547 15.015 -3.045 17.544 Atomic orbital electron populations 1.20367 0.87212 1.03456 1.03141 1.20849 0.94339 0.85301 1.10013 1.20961 0.92901 0.98007 1.10893 1.20968 0.97967 0.92914 1.11090 1.20920 0.84364 0.95250 1.09482 1.20392 0.92934 0.97481 1.03356 1.41476 1.06090 1.02761 1.57992 1.17785 1.00103 0.83636 0.95097 1.21124 0.98431 0.94686 0.97768 1.21409 0.99778 0.93355 0.97369 1.20064 1.00756 0.93193 0.96491 1.18352 0.84900 0.86576 0.83542 1.90617 1.51722 1.73467 1.34469 1.43708 1.57332 1.08589 1.05523 1.19414 1.40973 0.82451 1.07058 0.89761 1.25869 0.94567 1.03937 0.93202 1.70011 1.39164 1.40725 0.98990 0.85320 0.79370 0.77596 0.78055 1.18983 1.19688 1.20432 1.19871 0.90121 1.01675 0.81588 1.29130 0.94137 0.89200 0.92954 1.80825 1.11734 1.13427 1.11806 1.21089 0.94950 0.95092 0.96914 1.21165 1.00400 0.92650 0.97538 0.90482 0.88662 0.92710 0.83115 0.82971 0.90159 0.88703 0.92227 0.83565 0.84707 0.90483 0.86338 0.83892 0.84249 0.83188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.53 9.94 71.23 0.71 -0.82 16 2 C 0.00 0.07 6.81 41.02 0.28 0.35 16 3 C -0.20 -4.20 10.76 22.16 0.24 -3.96 16 4 C -0.21 -4.15 10.76 22.16 0.24 -3.91 16 5 C 0.01 0.17 6.80 41.02 0.28 0.45 16 6 C -0.08 -1.35 9.93 71.23 0.71 -0.65 16 7 N -0.41 -9.36 2.78 -320.14 -0.89 -10.25 16 8 C 0.12 2.96 4.65 38.27 0.18 3.14 16 9 C -0.10 -2.47 9.71 22.34 0.22 -2.25 16 10 C -0.10 -2.91 7.34 22.52 0.17 -2.74 16 11 C -0.10 -3.47 5.40 -20.08 -0.11 -3.58 16 12 C 0.47 21.50 7.28 86.69 0.63 22.13 16 13 O -0.62 -32.79 16.55 -4.06 -0.07 -32.86 16 14 N -0.43 -20.15 2.68 -649.05 -1.74 -21.89 16 15 C -0.37 -19.45 9.06 84.10 0.76 -18.68 16 16 H 0.08 4.84 7.44 -2.91 -0.02 4.81 16 17 C 0.03 1.52 5.02 84.95 0.43 1.95 16 18 N -0.85 -40.59 9.04 21.68 0.20 -40.40 16 19 Si 0.97 38.88 29.68 68.60 2.04 40.91 16 20 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 21 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 22 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 23 C 0.19 7.47 4.80 84.57 0.41 7.88 16 24 C 0.26 11.43 11.74 89.46 1.05 12.48 16 25 N -0.50 -23.34 18.53 19.99 0.37 -22.97 16 26 C -0.06 -1.75 9.63 22.52 0.22 -1.53 16 27 C -0.10 -2.32 9.69 22.34 0.22 -2.11 16 28 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.05 1.11 7.84 -2.38 -0.02 1.09 16 31 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 32 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 33 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.06 1.04 7.83 -2.38 -0.02 1.02 16 36 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 37 H 0.14 4.13 4.74 -2.91 -0.01 4.12 16 38 H 0.28 12.78 8.31 -92.71 -0.77 12.01 16 39 H 0.12 4.61 6.62 -2.39 -0.02 4.60 16 40 H 0.14 4.43 3.74 -2.39 -0.01 4.42 16 41 H 0.14 4.00 8.06 -2.91 -0.02 3.97 16 42 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -65.19 359.28 7.57 -57.62 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 1.06 Total: 21.70 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: 6.61 Total: 8.14 kcal Atomic # 7 Polarization: -93.45 SS G_CDS: -2.06 Total: -95.52 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -0.07 Total: -32.86 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.04 Total: 40.91 kcal Total: -65.19 7.57 -57.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072059762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.015 kcal (2) G-P(sol) polarization free energy of solvation -65.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds