Wall clock time and date at job start Tue Mar 31 2020 14:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31382 * 1 3 3 Si 1.86802 * 119.99996 * 2 1 4 4 H 1.48499 * 109.47099 * 239.99986 * 3 2 1 5 5 H 1.48505 * 109.47085 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47054 * 119.99805 * 3 2 1 7 7 C 1.39019 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99978 * 168.20257 * 7 2 1 9 9 N 1.36895 * 120.00027 * 348.20985 * 7 2 1 10 10 C 1.34777 * 120.00379 * 169.08912 * 9 7 2 11 11 O 1.21639 * 119.99812 * 355.61712 * 10 9 7 12 12 C 1.47424 * 120.00214 * 175.34247 * 10 9 7 13 13 C 1.39847 * 120.07449 * 34.45281 * 12 10 9 14 14 C 1.37605 * 119.92449 * 179.76187 * 13 12 10 15 15 C 1.39230 * 120.07354 * 0.51958 * 14 13 12 16 16 N 1.39141 * 119.92721 * 179.76197 * 15 14 13 17 17 C 1.39259 * 120.00212 * 154.25302 * 16 15 14 18 18 C 1.39473 * 120.86718 * 328.64210 * 17 16 15 19 19 C 1.37905 * 119.06555 * 179.77604 * 18 17 16 20 20 N 1.31991 * 120.84778 * 0.50706 * 19 18 17 21 21 C 1.31995 * 121.90653 * 359.74139 * 20 19 18 22 22 C 1.37907 * 120.84571 * 359.97438 * 21 20 19 23 23 C 1.39239 * 120.14931 * 359.73299 * 15 14 13 24 24 C 1.37599 * 120.07477 * 0.02562 * 23 15 14 25 25 C 1.46500 * 120.00316 * 349.08217 * 9 7 2 26 26 C 1.53009 * 117.49693 * 309.35030 * 25 9 7 27 27 C 1.52998 * 59.99837 * 252.50640 * 26 25 9 28 28 H 0.97002 * 120.00327 * 5.07983 * 1 2 3 29 29 H 1.08003 * 120.03931 * 0.03147 * 13 12 10 30 30 H 1.07993 * 119.96296 * 180.25409 * 14 13 12 31 31 H 0.96997 * 120.00125 * 334.25572 * 16 15 14 32 32 H 1.08000 * 120.46731 * 0.02562 * 18 17 16 33 33 H 1.08004 * 119.57763 * 180.22629 * 19 18 17 34 34 H 1.07996 * 119.57932 * 179.97438 * 21 20 19 35 35 H 1.07994 * 120.46859 * 179.97438 * 22 21 20 36 36 H 1.08001 * 119.96146 * 179.97438 * 23 15 14 37 37 H 1.07994 * 120.04126 * 180.02562 * 24 23 15 38 38 H 1.09000 * 115.54958 * 95.04967 * 25 9 7 39 39 H 1.08994 * 117.49751 * 359.97438 * 26 25 9 40 40 H 1.09001 * 117.49662 * 145.01510 * 26 25 9 41 41 H 1.09006 * 117.49823 * 252.51050 * 27 26 25 42 42 H 1.09004 * 117.52069 * 107.48110 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6178 0.0000 4 1 3.1016 1.6964 -1.2125 5 1 1.2828 2.7465 -0.0006 6 1 3.1015 1.6964 1.2125 7 6 2.0089 -1.2039 0.0005 8 1 3.0718 -1.2139 -0.1907 9 7 1.3461 -2.3769 0.2433 10 6 1.9628 -3.5561 0.0297 11 8 3.0788 -3.5801 -0.4536 12 6 1.2873 -4.8167 0.3876 13 6 -0.1001 -4.9308 0.2539 14 6 -0.7268 -6.1104 0.5842 15 6 0.0174 -7.1861 1.0612 16 7 -0.6201 -8.3759 1.3989 17 6 0.0810 -9.5783 1.3553 18 6 1.1093 -9.7740 0.4337 19 6 1.7822 -10.9777 0.4262 20 7 1.4574 -11.9399 1.2693 21 6 0.4874 -11.7954 2.1527 22 6 -0.2303 -10.6202 2.2289 23 6 1.3982 -7.0742 1.2005 24 6 2.0319 -5.8991 0.8674 25 6 -0.0335 -2.3504 0.7354 26 6 -0.3329 -1.4720 1.9519 27 6 -0.3112 -2.9951 2.0949 28 1 -0.4851 0.8367 -0.0744 29 1 -0.6785 -4.0954 -0.1123 30 1 -1.7977 -6.2006 0.4773 31 1 -1.5530 -8.3678 1.6647 32 1 1.3776 -8.9924 -0.2617 33 1 2.5824 -11.1368 -0.2816 34 1 0.2527 -12.6077 2.8245 35 1 -1.0230 -10.5087 2.9538 36 1 1.9725 -7.9104 1.5712 37 1 3.1030 -5.8130 0.9753 38 1 -0.8067 -2.4334 -0.0284 39 1 0.4967 -0.9141 2.3862 40 1 -1.3033 -0.9768 1.9885 41 1 -1.2673 -3.5020 2.2256 42 1 0.5326 -3.4394 2.6230 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073054886.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:12 Heat of formation + Delta-G solvation = 74.872083 kcal Electronic energy + Delta-G solvation = -26418.501960 eV Core-core repulsion = 22750.829983 eV Total energy + Delta-G solvation = -3667.671977 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.65144 -41.00860 -39.53376 -37.96309 -36.83400 -34.78239 -33.25830 -32.47552 -32.30640 -31.60195 -29.91255 -27.09774 -24.88368 -24.69795 -23.62250 -23.53244 -22.89704 -22.39081 -20.90902 -19.12589 -18.81086 -18.51263 -18.00674 -16.97627 -16.74280 -16.70065 -16.39954 -15.94277 -15.66075 -15.54096 -15.29942 -15.03249 -14.67791 -14.54021 -14.48805 -14.22367 -14.05649 -13.70601 -13.56085 -13.01529 -12.93235 -12.69673 -12.36440 -12.19387 -12.14873 -12.09076 -11.93302 -11.77963 -10.98321 -10.58074 -10.44753 -10.30888 -10.18619 -10.08546 -9.86124 -9.77593 -8.47179 -8.24564 -5.86946 -0.06890 0.24969 0.49636 0.61393 1.38500 1.39998 1.48568 2.06835 2.16182 2.24909 2.82254 2.95966 2.99571 3.23983 3.24810 3.66785 3.85796 3.92206 3.94404 3.99904 4.09075 4.26228 4.33155 4.38067 4.43174 4.50099 4.56593 4.63793 4.76940 4.89774 4.91674 4.94649 5.06899 5.12312 5.21085 5.27722 5.34899 5.38324 5.48583 5.53577 5.63874 5.66308 5.83753 6.04709 6.26908 6.51126 6.62636 7.14035 7.15922 7.45996 8.03824 8.67493 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.030857 B = 0.002844 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.181697 B = 9843.482716 C =10453.447544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.012 3.988 3 Si 0.981 3.019 4 H -0.279 1.279 5 H -0.264 1.264 6 H -0.275 1.275 7 C -0.351 4.351 8 H 0.069 0.931 9 N -0.420 5.420 10 C 0.463 3.537 11 O -0.647 6.647 12 C -0.148 4.148 13 C -0.053 4.053 14 C -0.158 4.158 15 C 0.195 3.805 16 N -0.663 5.663 17 C 0.214 3.786 18 C -0.228 4.228 19 C 0.117 3.883 20 N -0.537 5.537 21 C 0.119 3.881 22 C -0.215 4.215 23 C -0.169 4.169 24 C -0.055 4.055 25 C 0.112 3.888 26 C -0.112 4.112 27 C -0.183 4.183 28 H 0.275 0.725 29 H 0.137 0.863 30 H 0.162 0.838 31 H 0.427 0.573 32 H 0.130 0.870 33 H 0.168 0.832 34 H 0.183 0.817 35 H 0.163 0.837 36 H 0.133 0.867 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.054 0.946 40 H 0.099 0.901 41 H 0.127 0.873 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.956 -17.069 6.719 20.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.193 4.193 3 Si 0.805 3.195 4 H -0.205 1.205 5 H -0.188 1.188 6 H -0.200 1.200 7 C -0.479 4.479 8 H 0.087 0.913 9 N -0.135 5.135 10 C 0.256 3.744 11 O -0.538 6.538 12 C -0.153 4.153 13 C -0.072 4.072 14 C -0.179 4.179 15 C 0.096 3.904 16 N -0.287 5.287 17 C 0.106 3.894 18 C -0.252 4.252 19 C -0.039 4.039 20 N -0.249 5.249 21 C -0.038 4.038 22 C -0.238 4.238 23 C -0.190 4.190 24 C -0.075 4.075 25 C 0.008 3.992 26 C -0.150 4.150 27 C -0.221 4.221 28 H 0.085 0.915 29 H 0.155 0.845 30 H 0.179 0.821 31 H 0.267 0.733 32 H 0.148 0.852 33 H 0.185 0.815 34 H 0.200 0.800 35 H 0.180 0.820 36 H 0.151 0.849 37 H 0.128 0.872 38 H 0.120 0.880 39 H 0.073 0.927 40 H 0.117 0.883 41 H 0.145 0.855 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.089 -17.640 6.497 20.880 hybrid contribution 0.287 2.197 -0.330 2.240 sum -8.802 -15.443 6.168 18.815 Atomic orbital electron populations 1.70096 1.06040 1.28587 1.45293 1.25814 0.96546 1.01297 0.95634 0.85187 0.78184 0.77525 0.78598 1.20506 1.18813 1.20023 1.19565 0.93742 0.84429 1.50131 0.91283 1.43322 1.11948 1.04347 1.53887 1.18653 0.86802 0.84578 0.84411 1.90545 1.23295 1.87841 1.52125 1.19761 0.95008 0.93863 1.06621 1.21553 0.92335 0.97999 0.95327 1.20863 1.01299 0.91988 1.03783 1.17738 0.91532 0.86378 0.94778 1.41762 1.14073 1.01268 1.71592 1.18154 0.92363 0.86367 0.92478 1.22117 1.01248 1.00607 1.01190 1.22820 0.97461 0.87977 0.95606 1.67765 1.17490 1.32867 1.06750 1.23067 0.89541 0.96637 0.94521 1.22114 1.05801 0.94768 1.01113 1.20736 0.93835 0.97891 1.06519 1.20871 0.99286 0.91722 0.95624 1.21079 0.83086 1.05531 0.89539 1.22564 1.01200 0.91432 0.99763 1.23705 1.02928 0.96613 0.98856 0.91482 0.84536 0.82060 0.73286 0.85163 0.81475 0.80050 0.81971 0.84923 0.87211 0.87975 0.92719 0.88263 0.85539 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -42.51 9.23 21.68 0.20 -42.31 16 2 C 0.01 0.60 4.58 84.95 0.39 0.99 16 3 Si 0.98 42.05 29.57 68.60 2.03 44.08 16 4 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 5 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 7 C -0.35 -20.20 9.29 84.09 0.78 -19.42 16 8 H 0.07 4.34 7.27 -2.91 -0.02 4.32 16 9 N -0.42 -22.14 2.93 -616.79 -1.81 -23.95 16 10 C 0.46 24.47 7.29 86.66 0.63 25.10 16 11 O -0.65 -39.71 16.43 -4.15 -0.07 -39.78 16 12 C -0.15 -5.98 4.80 -20.08 -0.10 -6.08 16 13 C -0.05 -1.68 6.72 22.51 0.15 -1.53 16 14 C -0.16 -3.67 9.92 22.36 0.22 -3.44 16 15 C 0.19 4.43 6.09 38.46 0.23 4.66 16 16 N -0.66 -10.78 5.44 -180.00 -0.98 -11.76 16 17 C 0.21 3.79 5.95 38.56 0.23 4.02 16 18 C -0.23 -4.63 7.81 22.49 0.18 -4.45 16 19 C 0.12 2.31 11.17 84.59 0.95 3.26 16 20 N -0.54 -11.04 10.36 -196.15 -2.03 -13.08 16 21 C 0.12 1.83 11.17 84.59 0.95 2.77 16 22 C -0.21 -2.98 10.06 22.49 0.23 -2.75 16 23 C -0.17 -4.65 7.85 22.36 0.18 -4.47 16 24 C -0.05 -1.97 9.60 22.51 0.22 -1.76 16 25 C 0.11 4.79 2.27 44.99 0.10 4.89 16 26 C -0.11 -4.47 7.44 30.60 0.23 -4.24 16 27 C -0.18 -6.28 7.46 30.59 0.23 -6.05 16 28 H 0.27 12.67 8.32 -92.71 -0.77 11.90 16 29 H 0.14 4.47 4.79 -2.91 -0.01 4.46 16 30 H 0.16 2.51 8.06 -2.91 -0.02 2.48 16 31 H 0.43 4.38 8.89 -92.71 -0.82 3.56 16 32 H 0.13 2.89 6.66 -2.91 -0.02 2.87 16 33 H 0.17 2.68 8.06 -2.91 -0.02 2.65 16 34 H 0.18 1.64 8.06 -2.91 -0.02 1.61 16 35 H 0.16 1.28 8.06 -2.91 -0.02 1.25 16 36 H 0.13 3.35 6.31 -2.91 -0.02 3.33 16 37 H 0.11 4.23 7.99 -2.91 -0.02 4.20 16 38 H 0.10 4.33 6.88 -2.39 -0.02 4.32 16 39 H 0.05 2.50 7.67 -2.39 -0.02 2.48 16 40 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 41 H 0.13 3.32 8.07 -2.38 -0.02 3.30 16 42 H 0.07 2.62 7.86 -2.39 -0.02 2.60 16 Total: -1.00 -72.09 345.80 3.37 -68.72 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: 0.24 Total: 26.61 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: 5.78 Total: -8.52 kcal Atomic # 7 Polarization: -86.48 SS G_CDS: -4.62 Total: -91.10 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -0.07 Total: -39.78 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -72.09 3.37 -68.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073054886.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.592 kcal (2) G-P(sol) polarization free energy of solvation -72.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds