Wall clock time and date at job start Tue Mar 31 2020 14:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34426 * 125.55295 * 2 1 4 4 C 1.46732 * 106.51411 * 179.97438 * 3 2 1 5 5 C 1.47169 * 126.89554 * 180.02562 * 4 3 2 6 6 O 1.21659 * 119.99902 * 130.80680 * 5 4 3 7 7 N 1.34778 * 120.00262 * 310.80936 * 5 4 3 8 8 C 1.46504 * 119.99798 * 4.17085 * 7 5 4 9 9 C 1.36963 * 120.00123 * 184.17264 * 7 5 4 10 10 H 1.07996 * 120.00339 * 8.21992 * 9 7 5 11 11 C 1.38980 * 119.99653 * 188.22162 * 9 7 5 12 12 N 1.31408 * 120.00133 * 8.35313 * 11 9 7 13 13 Si 1.86801 * 119.99632 * 188.35618 * 11 9 7 14 14 H 1.48499 * 109.47155 * 60.00031 * 13 11 9 15 15 H 1.48497 * 109.47270 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47393 * 299.99886 * 13 11 9 17 17 C 1.36834 * 106.20837 * 0.02562 * 4 3 2 18 18 C 1.50706 * 125.86353 * 179.97438 * 17 4 3 19 19 N 1.35503 * 108.27207 * 359.73253 * 17 4 3 20 20 C 1.39867 * 124.94908 * 180.25816 * 19 17 4 21 21 C 1.39041 * 119.91626 * 64.95985 * 20 19 17 22 22 C 1.37736 * 120.08808 * 179.72496 * 21 20 19 23 23 C 1.39749 * 119.90973 * 0.52988 * 22 21 20 24 24 C 1.43201 * 120.08435 * 179.76853 * 23 22 21 25 25 N 7.60385 * 78.95682 * 179.68756 * 2 1 3 26 26 C 1.39747 * 119.83320 * 359.74663 * 23 22 21 27 27 C 1.37729 * 119.91745 * 359.97438 * 26 23 22 28 28 H 1.08997 * 109.46947 * 90.02589 * 1 2 3 29 29 H 1.09004 * 109.46864 * 330.02688 * 1 2 3 30 30 H 1.08994 * 109.47264 * 210.02709 * 1 2 3 31 31 H 1.08001 * 126.74164 * 0.02562 * 3 2 1 32 32 H 1.08997 * 109.47249 * 354.19071 * 8 7 5 33 33 H 1.09004 * 109.46801 * 114.18421 * 8 7 5 34 34 H 1.08991 * 109.47363 * 234.18726 * 8 7 5 35 35 H 0.97009 * 119.99769 * 180.02562 * 12 11 9 36 36 H 1.09002 * 109.47286 * 89.97666 * 18 17 4 37 37 H 1.09000 * 109.46813 * 209.97653 * 18 17 4 38 38 H 1.09002 * 109.47014 * 329.96738 * 18 17 4 39 39 H 1.08002 * 119.95264 * 0.02562 * 21 20 19 40 40 H 1.07993 * 120.04895 * 180.27761 * 22 21 20 41 41 H 1.08001 * 120.04404 * 179.97438 * 26 23 22 42 42 H 1.07997 * 119.96557 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2887 1.0937 0.0000 4 6 3.6757 0.6150 0.0006 5 6 4.8949 1.4394 0.0014 6 8 5.7840 1.2096 0.7993 7 7 5.0263 2.4489 -0.8818 8 6 3.9194 2.7842 -1.7811 9 6 6.1947 3.1613 -0.9387 10 1 7.0549 2.8339 -0.3737 11 6 6.2733 4.3056 -1.7234 12 7 5.1886 4.7971 -2.2791 13 14 7.9210 5.1450 -1.9885 14 1 8.8600 4.1974 -2.6408 15 1 7.7363 6.3349 -2.8574 16 1 8.4767 5.5695 -0.6785 17 6 3.6081 -0.7517 0.0004 18 6 4.7844 -1.6938 0.0003 19 7 2.3020 -1.1124 0.0057 20 6 1.8350 -2.4308 0.0122 21 6 2.0875 -3.2505 1.1066 22 6 1.6244 -4.5476 1.1193 23 6 0.9094 -5.0429 0.0255 24 6 0.4304 -6.3924 0.0326 25 7 0.0505 -7.4629 0.0407 26 6 0.6626 -4.2178 -1.0751 27 6 1.1240 -2.9201 -1.0779 28 1 -0.3633 -0.0005 -1.0276 29 1 -0.3633 0.8903 0.5134 30 1 -0.3633 -0.8897 0.5142 31 1 1.9602 2.1225 0.0004 32 1 3.1210 2.0516 -1.6634 33 1 3.5406 3.7767 -1.5366 34 1 4.2729 2.7740 -2.8120 35 1 5.2436 5.5956 -2.8271 36 1 5.0682 -1.9208 1.0279 37 1 4.5114 -2.6156 -0.5134 38 1 5.6242 -1.2264 -0.5139 39 1 2.6433 -2.8680 1.9499 40 1 1.8170 -5.1822 1.9715 41 1 0.1108 -4.5972 -1.9224 42 1 0.9341 -2.2819 -1.9282 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077325717.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:14 Heat of formation + Delta-G solvation = 72.768589 kcal Electronic energy + Delta-G solvation = -26190.773027 eV Core-core repulsion = 22523.009836 eV Total energy + Delta-G solvation = -3667.763191 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.73471 -40.39143 -39.65804 -37.54168 -36.60985 -34.28578 -33.62795 -33.37273 -32.20783 -30.44227 -30.01361 -28.19964 -26.85417 -25.19114 -24.92120 -23.95182 -22.56263 -21.11467 -20.05579 -19.59421 -18.83575 -17.96933 -17.37880 -16.99740 -16.29649 -15.91747 -15.76391 -15.66725 -15.39437 -15.20237 -15.07582 -14.62395 -14.55672 -14.39055 -14.10213 -13.98503 -13.94494 -13.65084 -13.49240 -13.31174 -13.27073 -13.13171 -12.91957 -12.88184 -12.79883 -12.57597 -12.36630 -12.22301 -12.11443 -12.00592 -11.02264 -10.41382 -10.21744 -10.15673 -9.80217 -9.28343 -8.87226 -8.20006 -5.86867 -0.53360 0.24087 1.00060 1.39479 1.41316 1.52692 1.57276 1.58636 1.76463 1.80600 2.29966 2.39919 2.73362 2.76686 3.18620 3.32523 3.72660 3.80546 3.81756 3.97026 4.11266 4.26147 4.30433 4.38132 4.53587 4.58411 4.67217 4.73226 4.81895 4.86593 4.91653 4.93163 5.05080 5.06496 5.16195 5.19224 5.20276 5.28849 5.34187 5.46676 5.56223 5.57731 5.88665 6.06506 6.18431 6.39217 6.53067 6.58223 7.21057 7.55627 8.13158 8.71022 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.026626 B = 0.002763 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.363136 B =10131.746617 C =10567.482909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.037 3.963 3 C -0.187 4.187 4 C -0.214 4.214 5 C 0.501 3.499 6 O -0.642 6.642 7 N -0.455 5.455 8 C 0.125 3.875 9 C -0.341 4.341 10 H 0.076 0.924 11 C -0.008 4.008 12 N -0.896 5.896 13 Si 0.995 3.005 14 H -0.270 1.270 15 H -0.267 1.267 16 H -0.274 1.274 17 C 0.072 3.928 18 C -0.073 4.073 19 N -0.404 5.404 20 C 0.134 3.866 21 C -0.115 4.115 22 C -0.042 4.042 23 C -0.026 4.026 24 C 0.281 3.719 25 N -0.459 5.459 26 C -0.041 4.041 27 C -0.108 4.108 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.143 0.857 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.033 0.967 35 H 0.272 0.728 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.054 0.946 39 H 0.139 0.861 40 H 0.162 0.838 41 H 0.167 0.833 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.387 -15.655 0.511 21.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.070 4.070 3 C -0.211 4.211 4 C -0.224 4.224 5 C 0.292 3.708 6 O -0.532 6.532 7 N -0.172 5.172 8 C -0.018 4.018 9 C -0.469 4.469 10 H 0.094 0.906 11 C -0.209 4.209 12 N -0.536 5.536 13 Si 0.818 3.182 14 H -0.195 1.195 15 H -0.192 1.192 16 H -0.199 1.199 17 C -0.039 4.039 18 C -0.131 4.131 19 N -0.080 5.080 20 C 0.045 3.955 21 C -0.134 4.134 22 C -0.063 4.063 23 C -0.030 4.030 24 C -0.033 4.033 25 N -0.135 5.135 26 C -0.061 4.061 27 C -0.127 4.127 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.097 0.903 31 H 0.160 0.840 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.052 0.948 35 H 0.082 0.918 36 H 0.098 0.902 37 H 0.109 0.891 38 H 0.073 0.927 39 H 0.157 0.843 40 H 0.180 0.820 41 H 0.184 0.816 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -14.734 -17.495 0.734 22.885 hybrid contribution 1.389 1.525 -0.072 2.064 sum -13.346 -15.970 0.662 20.823 Atomic orbital electron populations 1.20458 0.84490 1.04323 1.04211 1.20690 0.94869 0.83723 1.07669 1.21852 0.90016 0.98524 1.10741 1.20238 0.93377 0.93062 1.15716 1.17810 0.87219 0.83260 0.82547 1.90525 1.45490 1.74221 1.42983 1.43802 1.14179 1.28083 1.31122 1.21754 0.87890 0.99935 0.92224 1.19716 0.90875 1.07514 1.28787 0.90581 1.26121 1.02506 0.96397 0.95831 1.70225 1.28102 1.22497 1.32780 0.84983 0.77237 0.77631 0.78373 1.19535 1.19165 1.19945 1.20360 0.85174 0.93030 1.05371 1.20270 0.92655 0.96868 1.03284 1.41033 1.04086 1.04223 1.58665 1.18217 0.98708 0.82694 0.95923 1.21232 1.00828 0.93870 0.97456 1.21209 0.93383 0.94272 0.97464 1.16115 1.03144 0.86011 0.97706 1.25708 0.92508 0.92523 0.92597 1.81324 1.10370 1.12958 1.08801 1.21263 0.96360 0.91351 0.97163 1.21257 0.98121 0.96167 0.97124 0.89032 0.89255 0.90289 0.83966 0.91060 0.91993 0.94832 0.91824 0.90161 0.89118 0.92658 0.84319 0.82037 0.81586 0.83221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.20 9.82 71.24 0.70 -0.50 16 2 C 0.04 0.95 6.76 40.92 0.28 1.22 16 3 C -0.19 -6.46 8.57 23.62 0.20 -6.26 16 4 C -0.21 -9.06 5.22 -19.04 -0.10 -9.16 16 5 C 0.50 27.16 7.12 86.59 0.62 27.78 16 6 O -0.64 -39.14 16.58 -4.22 -0.07 -39.21 16 7 N -0.46 -25.57 3.02 -662.90 -2.00 -27.58 16 8 C 0.12 6.11 8.40 127.77 1.07 7.18 16 9 C -0.34 -20.42 9.52 84.07 0.80 -19.62 16 10 H 0.08 4.82 7.22 -2.91 -0.02 4.80 16 11 C -0.01 -0.43 5.37 84.93 0.46 0.03 16 12 N -0.90 -48.55 9.69 21.67 0.21 -48.34 16 13 Si 0.99 43.70 29.56 68.60 2.03 45.73 16 14 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 15 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 16 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 17 C 0.07 2.44 6.82 41.66 0.28 2.73 16 18 C -0.07 -2.21 9.51 71.24 0.68 -1.53 16 19 N -0.40 -10.22 2.74 -319.62 -0.88 -11.10 16 20 C 0.13 2.29 4.47 38.25 0.17 2.46 16 21 C -0.11 -1.58 9.59 22.34 0.21 -1.37 16 22 C -0.04 -0.40 9.75 22.52 0.22 -0.18 16 23 C -0.03 -0.26 5.74 -21.30 -0.12 -0.38 16 24 C 0.28 3.94 15.33 88.33 1.35 5.30 16 25 N -0.46 -9.13 18.54 19.00 0.35 -8.78 16 26 C -0.04 -0.33 9.75 22.51 0.22 -0.11 16 27 C -0.11 -1.27 9.60 22.34 0.21 -1.05 16 28 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.08 0.98 7.76 -2.39 -0.02 0.96 16 31 H 0.14 4.86 7.70 -2.91 -0.02 4.84 16 32 H 0.07 3.01 4.36 -2.39 -0.01 3.00 16 33 H 0.06 3.18 6.70 -2.38 -0.02 3.16 16 34 H 0.03 1.70 7.48 -2.39 -0.02 1.68 16 35 H 0.27 13.71 8.31 -92.70 -0.77 12.94 16 36 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.09 2.04 7.78 -2.39 -0.02 2.03 16 38 H 0.05 2.01 7.93 -2.39 -0.02 1.99 16 39 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 40 H 0.16 0.87 8.06 -2.91 -0.02 0.85 16 41 H 0.17 0.56 8.06 -2.91 -0.02 0.54 16 42 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -78.17 364.68 7.95 -70.22 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 1.05 Total: 12.52 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: 7.26 Total: 6.54 kcal Atomic # 7 Polarization: -93.48 SS G_CDS: -2.32 Total: -95.79 kcal Atomic # 8 Polarization: -39.14 SS G_CDS: -0.07 Total: -39.21 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -78.17 7.95 -70.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077325717.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.989 kcal (2) G-P(sol) polarization free energy of solvation -78.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds