Wall clock time and date at job start Tue Mar 31 2020 13:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47171 * 138.86787 * 3 2 1 5 5 N 1.46506 * 109.47320 * 180.02562 * 4 3 2 6 6 C 1.46499 * 119.99537 * 269.99999 * 5 4 3 7 7 C 1.50697 * 109.46949 * 269.99553 * 6 5 4 8 8 H 1.08004 * 120.00186 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00081 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00096 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00103 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47135 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47061 * 119.99902 * 11 9 7 14 14 H 1.48503 * 109.47075 * 240.00004 * 11 9 7 15 15 C 1.34777 * 120.00264 * 89.99349 * 5 4 3 16 16 O 1.21283 * 119.99750 * 180.02562 * 15 5 4 17 17 C 1.50702 * 119.99928 * 0.28128 * 15 5 4 18 18 H 1.09003 * 115.54961 * 34.04814 * 17 15 5 19 19 C 1.53003 * 117.49581 * 248.34706 * 17 15 5 20 20 C 1.52996 * 117.49493 * 179.72213 * 17 15 5 21 21 H 1.08996 * 117.50542 * 359.97438 * 20 17 15 22 22 C 1.50707 * 117.49686 * 214.97547 * 20 17 15 23 23 C 1.38380 * 119.92304 * 300.00596 * 22 20 17 24 24 C 1.38343 * 120.30726 * 179.97438 * 23 22 20 25 25 C 1.37968 * 120.14851 * 359.97438 * 24 23 22 26 26 C 1.39618 * 119.84613 * 0.02562 * 25 24 23 27 27 C 1.43195 * 120.15019 * 180.02562 * 26 25 24 28 28 N 9.36574 * 120.81402 * 109.78385 * 4 1 2 29 29 C 1.37921 * 119.92355 * 119.72287 * 22 20 17 30 30 H 1.08997 * 109.47542 * 18.86519 * 3 2 1 31 31 H 1.09004 * 109.47171 * 258.86569 * 3 2 1 32 32 H 1.08994 * 109.47354 * 59.99917 * 4 3 2 33 33 H 1.09001 * 109.47139 * 299.99492 * 4 3 2 34 34 H 1.09001 * 109.47567 * 29.99407 * 6 5 4 35 35 H 1.09005 * 109.47076 * 149.99913 * 6 5 4 36 36 H 0.96991 * 119.99957 * 180.02562 * 10 9 7 37 37 H 1.08996 * 117.49883 * 359.97438 * 19 17 15 38 38 H 1.08991 * 117.49812 * 145.02342 * 19 17 15 39 39 H 1.08003 * 119.85220 * 359.97438 * 23 22 20 40 40 H 1.07995 * 119.92845 * 180.02562 * 24 23 22 41 41 H 1.08002 * 120.07956 * 179.97438 * 25 24 23 42 42 H 1.08000 * 120.07649 * 0.03332 * 29 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.0874 -0.9489 5 7 4.5826 1.0876 -0.9493 6 6 5.3151 1.9222 0.0062 7 6 5.5658 3.2786 -0.6007 8 1 5.2143 3.4973 -1.5982 9 6 6.2441 4.2405 0.1175 10 7 6.6727 3.9742 1.3320 11 14 6.5543 5.9221 -0.6345 12 1 5.9760 5.9674 -2.0016 13 1 5.9173 6.9661 0.2077 14 1 8.0167 6.1695 -0.7078 15 6 5.2563 0.3200 -1.8287 16 8 6.4692 0.3200 -1.8287 17 6 4.5027 -0.5338 -2.8157 18 1 3.5641 -0.1151 -3.1790 19 6 4.5782 -2.0517 -2.6389 20 6 5.3248 -1.3776 -3.7919 21 1 6.4106 -1.3149 -3.7207 22 6 4.7746 -1.5669 -5.1821 23 6 3.5434 -2.1730 -5.3607 24 6 3.0305 -2.3503 -6.6332 25 6 3.7443 -1.9227 -7.7338 26 6 4.9871 -1.3104 -7.5609 27 6 5.7333 -0.8637 -8.6986 28 7 6.3275 -0.5090 -9.6013 29 6 5.4966 -1.1304 -6.2732 30 1 2.9718 -0.9716 -0.3323 31 1 2.9712 0.1993 1.0084 32 1 2.7538 2.0596 -0.6166 33 1 2.7543 0.8887 -1.9572 34 1 4.7263 2.0348 0.9165 35 1 6.2677 1.4496 0.2457 36 1 7.1494 4.6510 1.8374 37 1 5.1733 -2.4327 -1.8090 38 1 3.6893 -2.6319 -2.8859 39 1 2.9802 -2.5092 -4.5026 40 1 2.0689 -2.8236 -6.7655 41 1 3.3431 -2.0621 -8.7268 42 1 6.4555 -0.6539 -6.1322 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080933082.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:59 Heat of formation + Delta-G solvation = 71.153771 kcal Electronic energy + Delta-G solvation = -25452.635297 eV Core-core repulsion = 21784.802083 eV Total energy + Delta-G solvation = -3667.833215 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.38928 -39.30065 -37.18492 -36.79451 -36.08101 -35.19692 -32.89269 -31.60798 -31.15013 -30.86496 -27.69872 -24.78736 -24.58855 -24.02841 -23.28725 -22.05726 -21.34095 -18.52547 -18.33140 -17.72857 -16.92036 -16.58420 -16.49818 -15.93676 -15.48985 -15.05183 -14.72484 -14.45514 -14.39892 -14.25656 -13.96938 -13.69796 -13.43125 -13.19945 -13.01695 -12.77371 -12.75620 -12.46957 -12.33010 -12.19958 -12.05429 -11.81315 -11.79635 -11.33745 -11.29615 -11.04987 -10.91149 -10.83007 -10.62083 -10.47680 -10.21603 -9.72405 -9.28663 -9.16786 -8.86400 -8.50411 -7.89647 -6.12103 -4.16677 0.46020 0.95162 2.41076 2.60960 2.70176 2.79406 3.01307 3.26420 3.34962 3.37999 3.48576 3.55758 3.62873 3.97988 4.11219 4.35606 4.42193 4.52126 4.69409 4.70739 4.79287 4.81072 4.96425 5.00966 5.16079 5.18354 5.21457 5.26559 5.39921 5.50121 5.53599 5.61045 5.80400 5.87664 5.90924 5.97666 5.99490 6.07755 6.29069 6.47182 6.88932 7.23022 7.30700 7.38533 7.55580 7.84210 8.13424 8.20833 8.79200 8.94003 9.49274 10.96044 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009146 B = 0.003540 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3060.598172 B = 7908.199477 C = 9948.155209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.217 3.783 3 C -0.050 4.050 4 C 0.118 3.882 5 N -0.591 5.591 6 C 0.244 3.756 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.896 3.104 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.536 3.464 16 O -0.532 6.532 17 C -0.173 4.173 18 H 0.124 0.876 19 C -0.147 4.147 20 C -0.093 4.093 21 H 0.131 0.869 22 C -0.045 4.045 23 C -0.091 4.091 24 C -0.117 4.117 25 C -0.077 4.077 26 C -0.027 4.027 27 C 0.256 3.744 28 N -0.419 5.419 29 C -0.059 4.059 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.036 0.964 35 H 0.047 0.953 36 H 0.263 0.737 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.797 -15.476 -9.843 20.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.101 4.101 3 C -0.091 4.091 4 C -0.008 4.008 5 N -0.322 5.322 6 C 0.126 3.874 7 C -0.568 4.568 8 H 0.077 0.923 9 C -0.139 4.139 10 N -0.532 5.532 11 Si 0.724 3.276 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.322 3.678 16 O -0.408 6.408 17 C -0.194 4.194 18 H 0.142 0.858 19 C -0.184 4.184 20 C -0.112 4.112 21 H 0.149 0.851 22 C -0.045 4.045 23 C -0.109 4.109 24 C -0.135 4.135 25 C -0.098 4.098 26 C -0.031 4.031 27 C -0.060 4.060 28 N -0.094 5.094 29 C -0.080 4.080 30 H 0.126 0.874 31 H 0.134 0.866 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.149 0.851 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.798 -14.805 -11.065 20.471 hybrid contribution 0.327 1.024 0.047 1.076 sum -8.471 -13.781 -11.019 19.573 Atomic orbital electron populations 1.81212 1.13061 1.08994 1.09121 1.29124 0.95114 0.92913 0.92900 1.19894 0.81281 1.03050 1.04889 1.21314 0.82163 0.98722 0.98601 1.48122 1.04909 1.43283 1.35863 1.19373 0.92603 0.88884 0.86556 1.21454 1.36663 0.97036 1.01609 0.92287 1.24912 0.95271 0.98917 0.94838 1.69923 1.38256 1.34618 1.10418 0.86475 0.78137 0.83730 0.79291 1.19774 1.20957 1.20870 1.19332 0.87390 0.80001 0.81076 1.90696 1.13658 1.65977 1.70493 1.22570 1.01885 0.93854 1.01109 0.85830 1.23137 1.02691 0.92309 1.00246 1.21063 0.99890 1.03508 0.86711 0.85120 1.19075 0.94298 0.97760 0.93399 1.21365 0.94910 0.96899 0.97771 1.21057 1.00224 1.00362 0.91868 1.21161 0.92490 0.96296 0.99835 1.15954 0.94758 1.04260 0.88099 1.25784 0.93480 0.93599 0.93095 1.81324 1.08679 1.08859 1.10573 1.21075 1.00168 0.96843 0.89875 0.87365 0.86615 0.88896 0.90538 0.94654 0.93532 0.92700 0.87440 0.87650 0.84927 0.84874 0.85128 0.84558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.14 18.54 42.15 0.78 -5.36 16 2 C 0.22 2.41 15.43 -20.76 -0.32 2.09 16 3 C -0.05 -0.47 6.03 -29.52 -0.18 -0.65 16 4 C 0.12 1.46 5.19 -4.04 -0.02 1.44 16 5 N -0.59 -10.17 2.46 -175.06 -0.43 -10.60 16 6 C 0.24 5.58 5.16 -5.20 -0.03 5.56 16 7 C -0.53 -13.82 9.39 -34.44 -0.32 -14.15 16 8 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -25.09 13.29 55.43 0.74 -24.35 16 11 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 12 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 C 0.54 9.11 7.46 -10.98 -0.08 9.03 16 16 O -0.53 -11.57 15.84 5.55 0.09 -11.49 16 17 C -0.17 -1.95 4.92 -91.77 -0.45 -2.40 16 18 H 0.12 1.18 6.43 -51.93 -0.33 0.84 16 19 C -0.15 -1.21 9.56 -26.72 -0.26 -1.47 16 20 C -0.09 -0.95 5.55 -91.77 -0.51 -1.46 16 21 H 0.13 1.57 7.67 -51.93 -0.40 1.17 16 22 C -0.05 -0.39 5.60 -104.68 -0.59 -0.98 16 23 C -0.09 -0.61 9.29 -39.49 -0.37 -0.97 16 24 C -0.12 -0.68 10.03 -39.64 -0.40 -1.08 16 25 C -0.08 -0.52 9.76 -39.17 -0.38 -0.90 16 26 C -0.03 -0.24 5.73 -106.93 -0.61 -0.85 16 27 C 0.26 2.78 15.34 -22.43 -0.34 2.43 16 28 N -0.42 -5.57 18.55 41.89 0.78 -4.79 16 29 C -0.06 -0.54 9.44 -39.17 -0.37 -0.91 16 30 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.09 1.25 8.07 -51.93 -0.42 0.84 16 33 H 0.08 0.77 5.98 -51.93 -0.31 0.46 16 34 H 0.04 0.80 8.07 -51.93 -0.42 0.38 16 35 H 0.05 1.22 7.42 -51.93 -0.39 0.83 16 36 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.11 0.57 6.17 -51.93 -0.32 0.25 16 39 H 0.13 0.64 6.00 -52.48 -0.32 0.33 16 40 H 0.13 0.47 8.06 -52.49 -0.42 0.04 16 41 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 379.41 15.07 5.72 5.72 Total: -1.00 -33.64 379.41 -7.66 -41.30 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -4.98 Total: -2.76 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -5.33 Total: -3.68 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: 1.86 Total: -45.10 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.09 Total: -11.49 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.64 -7.66 -41.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080933082.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.456 kcal (2) G-P(sol) polarization free energy of solvation -33.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds