Wall clock time and date at job start Tue Mar 31 2020 13:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47171 * 138.86787 * 3 2 1 5 5 N 1.46506 * 109.47320 * 180.02562 * 4 3 2 6 6 C 1.46499 * 119.99537 * 269.99999 * 5 4 3 7 7 C 1.50697 * 109.46949 * 269.99553 * 6 5 4 8 8 H 1.08004 * 120.00186 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00081 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00096 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00103 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47135 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47061 * 119.99902 * 11 9 7 14 14 H 1.48503 * 109.47075 * 240.00004 * 11 9 7 15 15 C 1.34777 * 120.00264 * 89.99349 * 5 4 3 16 16 O 1.21283 * 119.99750 * 180.02562 * 15 5 4 17 17 C 1.50702 * 119.99928 * 0.28128 * 15 5 4 18 18 H 1.09003 * 115.54961 * 34.04814 * 17 15 5 19 19 C 1.53003 * 117.49581 * 248.34706 * 17 15 5 20 20 C 1.52996 * 117.49493 * 179.72213 * 17 15 5 21 21 H 1.08996 * 117.50542 * 359.97438 * 20 17 15 22 22 C 1.50707 * 117.49686 * 214.97547 * 20 17 15 23 23 C 1.38380 * 119.92304 * 300.00596 * 22 20 17 24 24 C 1.38343 * 120.30726 * 179.97438 * 23 22 20 25 25 C 1.37968 * 120.14851 * 359.97438 * 24 23 22 26 26 C 1.39618 * 119.84613 * 0.02562 * 25 24 23 27 27 C 1.43195 * 120.15019 * 180.02562 * 26 25 24 28 28 N 9.36574 * 120.81402 * 109.78385 * 4 1 2 29 29 C 1.37921 * 119.92355 * 119.72287 * 22 20 17 30 30 H 1.08997 * 109.47542 * 18.86519 * 3 2 1 31 31 H 1.09004 * 109.47171 * 258.86569 * 3 2 1 32 32 H 1.08994 * 109.47354 * 59.99917 * 4 3 2 33 33 H 1.09001 * 109.47139 * 299.99492 * 4 3 2 34 34 H 1.09001 * 109.47567 * 29.99407 * 6 5 4 35 35 H 1.09005 * 109.47076 * 149.99913 * 6 5 4 36 36 H 0.96991 * 119.99957 * 180.02562 * 10 9 7 37 37 H 1.08996 * 117.49883 * 359.97438 * 19 17 15 38 38 H 1.08991 * 117.49812 * 145.02342 * 19 17 15 39 39 H 1.08003 * 119.85220 * 359.97438 * 23 22 20 40 40 H 1.07995 * 119.92845 * 180.02562 * 24 23 22 41 41 H 1.08002 * 120.07956 * 179.97438 * 25 24 23 42 42 H 1.08000 * 120.07649 * 0.03332 * 29 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.0874 -0.9489 5 7 4.5826 1.0876 -0.9493 6 6 5.3151 1.9222 0.0062 7 6 5.5658 3.2786 -0.6007 8 1 5.2143 3.4973 -1.5982 9 6 6.2441 4.2405 0.1175 10 7 6.6727 3.9742 1.3320 11 14 6.5543 5.9221 -0.6345 12 1 5.9760 5.9674 -2.0016 13 1 5.9173 6.9661 0.2077 14 1 8.0167 6.1695 -0.7078 15 6 5.2563 0.3200 -1.8287 16 8 6.4692 0.3200 -1.8287 17 6 4.5027 -0.5338 -2.8157 18 1 3.5641 -0.1151 -3.1790 19 6 4.5782 -2.0517 -2.6389 20 6 5.3248 -1.3776 -3.7919 21 1 6.4106 -1.3149 -3.7207 22 6 4.7746 -1.5669 -5.1821 23 6 3.5434 -2.1730 -5.3607 24 6 3.0305 -2.3503 -6.6332 25 6 3.7443 -1.9227 -7.7338 26 6 4.9871 -1.3104 -7.5609 27 6 5.7333 -0.8637 -8.6986 28 7 6.3275 -0.5090 -9.6013 29 6 5.4966 -1.1304 -6.2732 30 1 2.9718 -0.9716 -0.3323 31 1 2.9712 0.1993 1.0084 32 1 2.7538 2.0596 -0.6166 33 1 2.7543 0.8887 -1.9572 34 1 4.7263 2.0348 0.9165 35 1 6.2677 1.4496 0.2457 36 1 7.1494 4.6510 1.8374 37 1 5.1733 -2.4327 -1.8090 38 1 3.6893 -2.6319 -2.8859 39 1 2.9802 -2.5092 -4.5026 40 1 2.0689 -2.8236 -6.7655 41 1 3.3431 -2.0621 -8.7268 42 1 6.4555 -0.6539 -6.1322 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080933082.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:58 Heat of formation + Delta-G solvation = 52.773574 kcal Electronic energy + Delta-G solvation = -25453.432323 eV Core-core repulsion = 21784.802083 eV Total energy + Delta-G solvation = -3668.630240 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.28332 -40.27411 -38.12569 -37.78894 -36.99759 -36.49662 -34.80957 -32.18669 -32.11325 -31.78514 -29.40167 -26.08403 -25.30186 -25.22107 -24.04287 -23.30741 -22.06870 -19.68952 -19.10669 -18.81170 -18.32954 -17.90710 -17.24112 -17.16695 -16.47811 -16.13451 -15.94805 -15.58695 -15.44205 -15.09652 -14.85503 -14.71929 -14.44291 -14.18325 -14.14099 -13.91582 -13.67768 -13.47783 -13.45298 -13.34329 -13.19055 -12.89157 -12.80895 -12.64143 -12.53299 -12.43541 -12.17633 -11.94405 -11.82004 -11.64103 -11.51522 -11.28667 -10.58833 -10.51442 -9.86174 -9.54158 -9.42475 -8.18029 -6.29828 -0.15115 0.38393 1.38041 1.41180 1.50973 1.56788 1.70235 1.83269 1.92522 1.96860 2.32103 2.45227 2.81132 2.85761 3.11699 3.15502 3.25133 3.62375 3.85224 3.91961 3.98904 4.12639 4.15721 4.21521 4.23343 4.36955 4.39158 4.61832 4.65215 4.84524 4.91352 4.97668 5.04583 5.09114 5.17442 5.18584 5.26134 5.37321 5.40541 5.48670 5.63221 5.66107 5.90760 5.95580 6.14200 6.41249 6.68778 6.77736 6.85627 7.35726 7.57019 8.88609 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009146 B = 0.003540 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3060.598172 B = 7908.199477 C = 9948.155209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.247 3.753 3 C -0.036 4.036 4 C 0.114 3.886 5 N -0.594 5.594 6 C 0.259 3.741 7 C -0.539 4.539 8 H 0.052 0.948 9 C 0.012 3.988 10 N -0.925 5.925 11 Si 0.954 3.046 12 H -0.270 1.270 13 H -0.272 1.272 14 H -0.286 1.286 15 C 0.528 3.472 16 O -0.593 6.593 17 C -0.179 4.179 18 H 0.152 0.848 19 C -0.113 4.113 20 C -0.100 4.100 21 H 0.098 0.902 22 C -0.054 4.054 23 C -0.078 4.078 24 C -0.108 4.108 25 C -0.069 4.069 26 C -0.044 4.044 27 C 0.277 3.723 28 N -0.473 5.473 29 C -0.075 4.075 30 H 0.142 0.858 31 H 0.116 0.884 32 H 0.078 0.922 33 H 0.109 0.891 34 H 0.035 0.965 35 H 0.004 0.996 36 H 0.265 0.735 37 H 0.101 0.899 38 H 0.152 0.848 39 H 0.164 0.836 40 H 0.169 0.831 41 H 0.150 0.850 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.116 -17.360 -10.693 23.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C -0.070 4.070 3 C -0.077 4.077 4 C -0.010 4.010 5 N -0.323 5.323 6 C 0.138 3.862 7 C -0.578 4.578 8 H 0.070 0.930 9 C -0.187 4.187 10 N -0.565 5.565 11 Si 0.780 3.220 12 H -0.194 1.194 13 H -0.198 1.198 14 H -0.212 1.212 15 C 0.317 3.683 16 O -0.474 6.474 17 C -0.200 4.200 18 H 0.170 0.830 19 C -0.150 4.150 20 C -0.119 4.119 21 H 0.117 0.883 22 C -0.054 4.054 23 C -0.096 4.096 24 C -0.126 4.126 25 C -0.089 4.089 26 C -0.048 4.048 27 C -0.037 4.037 28 N -0.149 5.149 29 C -0.096 4.096 30 H 0.159 0.841 31 H 0.134 0.866 32 H 0.097 0.903 33 H 0.127 0.873 34 H 0.053 0.947 35 H 0.022 0.978 36 H 0.074 0.926 37 H 0.120 0.880 38 H 0.169 0.831 39 H 0.181 0.819 40 H 0.186 0.814 41 H 0.168 0.832 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.170 -16.700 -11.924 23.857 hybrid contribution 1.376 1.564 0.337 2.110 sum -10.794 -15.136 -11.587 21.906 Atomic orbital electron populations 1.81260 1.14368 1.10548 1.10578 1.29117 0.94875 0.91474 0.91516 1.19811 0.80111 1.03533 1.04255 1.21531 0.78924 0.99315 1.01264 1.48001 1.06867 1.42481 1.34944 1.18796 0.91520 0.88082 0.87779 1.21796 1.36169 0.98567 1.01239 0.92994 1.25687 0.95298 1.02394 0.95306 1.70019 1.39169 1.35737 1.11565 0.85563 0.77677 0.80012 0.78742 1.19398 1.19755 1.21193 1.20350 0.87034 0.79740 0.81138 1.90667 1.16670 1.67957 1.72148 1.22444 1.02245 0.94884 1.00417 0.83045 1.23355 1.03403 0.89761 0.98455 1.20953 0.98507 1.04069 0.88392 0.88338 1.18958 0.95482 0.99130 0.91857 1.21691 0.93584 0.95042 0.99331 1.21456 1.01105 0.99151 0.90860 1.21477 0.91210 0.94723 1.01512 1.16024 0.95857 1.06010 0.86877 1.26194 0.92489 0.92250 0.92774 1.81329 1.10289 1.10927 1.12332 1.21039 1.00092 0.97698 0.90722 0.84067 0.86614 0.90333 0.87329 0.94700 0.97828 0.92591 0.88026 0.83062 0.81895 0.81368 0.83208 0.86304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.24 18.54 20.00 0.37 -11.87 16 2 C 0.25 4.70 15.43 89.44 1.38 6.08 16 3 C -0.04 -0.56 6.03 28.79 0.17 -0.39 16 4 C 0.11 2.56 5.19 86.38 0.45 3.01 16 5 N -0.59 -20.31 2.46 -826.15 -2.03 -22.34 16 6 C 0.26 12.27 5.16 85.63 0.44 12.71 16 7 C -0.54 -28.92 9.39 25.60 0.24 -28.68 16 8 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 9 C 0.01 0.68 5.46 84.66 0.46 1.14 16 10 N -0.92 -53.32 13.29 21.45 0.28 -53.03 16 11 Si 0.95 43.74 29.54 68.60 2.03 45.76 16 12 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 13 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 14 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 15 C 0.53 17.96 7.46 87.66 0.65 18.62 16 16 O -0.59 -27.22 15.84 -3.04 -0.05 -27.27 16 17 C -0.18 -3.57 4.92 -11.54 -0.06 -3.63 16 18 H 0.15 2.17 6.43 -2.39 -0.02 2.15 16 19 C -0.11 -1.41 9.56 30.60 0.29 -1.12 16 20 C -0.10 -1.90 5.55 -11.54 -0.06 -1.96 16 21 H 0.10 2.52 7.67 -2.39 -0.02 2.50 16 22 C -0.05 -0.81 5.60 -19.90 -0.11 -0.92 16 23 C -0.08 -0.63 9.29 22.33 0.21 -0.42 16 24 C -0.11 -0.68 10.03 22.23 0.22 -0.45 16 25 C -0.07 -0.69 9.76 22.54 0.22 -0.47 16 26 C -0.04 -0.72 5.73 -21.36 -0.12 -0.84 16 27 C 0.28 6.07 15.34 88.31 1.35 7.43 16 28 N -0.47 -12.97 18.55 19.02 0.35 -12.62 16 29 C -0.07 -1.35 9.44 22.54 0.21 -1.13 16 30 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.12 1.94 8.14 -2.38 -0.02 1.92 16 32 H 0.08 2.02 8.07 -2.39 -0.02 2.00 16 33 H 0.11 1.76 5.98 -2.39 -0.01 1.75 16 34 H 0.04 1.63 8.07 -2.39 -0.02 1.61 16 35 H 0.00 0.20 7.42 -2.38 -0.02 0.18 16 36 H 0.27 14.46 8.31 -92.72 -0.77 13.69 16 37 H 0.10 1.47 8.14 -2.39 -0.02 1.46 16 38 H 0.15 0.54 6.17 -2.39 -0.01 0.53 16 39 H 0.16 0.33 6.00 -2.91 -0.02 0.31 16 40 H 0.17 -0.01 8.06 -2.91 -0.02 -0.04 16 41 H 0.15 0.92 8.06 -2.91 -0.02 0.89 16 42 H 0.12 2.43 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -79.92 379.41 7.98 -71.94 By element: Atomic # 1 Polarization: -0.61 SS G_CDS: 1.06 Total: 0.46 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: 5.96 Total: 8.97 kcal Atomic # 7 Polarization: -98.84 SS G_CDS: -1.02 Total: -99.86 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -0.05 Total: -27.27 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -79.92 7.98 -71.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080933082.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.715 kcal (2) G-P(sol) polarization free energy of solvation -79.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds