Wall clock time and date at job start Tue Mar 31 2020 13:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00169 * 2 1 4 4 H 1.48500 * 109.47317 * 239.99795 * 3 2 1 5 5 H 1.48496 * 109.46902 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47011 * 119.99871 * 3 2 1 7 7 C 1.37879 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99912 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00305 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47155 * 180.02562 * 9 7 2 11 11 C 1.46901 * 110.99720 * 193.95501 * 10 9 7 12 12 C 1.50704 * 109.47259 * 66.04641 * 11 10 9 13 13 N 1.29900 * 124.85820 * 89.69716 * 12 11 10 14 14 C 1.36058 * 108.80026 * 179.89349 * 13 12 11 15 15 C 1.39584 * 133.80445 * 180.09733 * 14 13 12 16 16 C 1.37680 * 119.73284 * 180.26918 * 15 14 13 17 17 C 1.38725 * 120.42083 * 0.03740 * 16 15 14 18 18 C 1.37914 * 120.47399 * 359.96249 * 17 16 15 19 19 C 1.38674 * 119.87236 * 0.02562 * 18 17 16 20 20 O 1.34230 * 124.85180 * 269.99522 * 12 11 10 21 21 C 1.46898 * 111.00465 * 70.00178 * 10 9 7 22 22 C 1.50707 * 109.46592 * 293.95579 * 21 10 9 23 23 C 1.38227 * 119.62024 * 94.97729 * 22 21 10 24 24 C 1.38627 * 119.15702 * 179.78495 * 23 22 21 25 25 C 1.38669 * 118.42389 * 0.47826 * 24 23 22 26 26 C 1.38186 * 119.16143 * 359.49762 * 25 24 23 27 27 N 1.31856 * 119.61172 * 274.99481 * 22 21 10 28 28 H 0.96999 * 120.00005 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47171 * 59.99704 * 9 7 2 30 30 H 1.08997 * 109.46773 * 300.00148 * 9 7 2 31 31 H 1.09005 * 109.47080 * 186.04552 * 11 10 9 32 32 H 1.08999 * 109.47458 * 306.04195 * 11 10 9 33 33 H 1.08000 * 120.13933 * 0.30480 * 15 14 13 34 34 H 1.08000 * 119.79718 * 180.02562 * 16 15 14 35 35 H 1.08000 * 119.76278 * 179.97438 * 17 16 15 36 36 H 1.07995 * 120.06209 * 180.02562 * 18 17 16 37 37 H 1.08993 * 109.47549 * 173.95144 * 21 10 9 38 38 H 1.08997 * 109.47171 * 53.94721 * 21 10 9 39 39 H 1.07998 * 120.41916 * 359.97438 * 23 22 21 40 40 H 1.08008 * 120.78688 * 180.22921 * 24 23 22 41 41 H 1.08002 * 120.42244 * 179.78279 * 25 24 23 42 42 H 1.07996 * 119.61757 * 180.25243 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5361 -4.8807 -0.3313 12 6 1.0427 -4.8309 -1.7544 13 7 1.7294 -5.2044 -2.7918 14 6 0.9722 -5.0228 -3.9075 15 6 1.1873 -5.2472 -5.2683 16 6 0.1958 -4.9464 -6.1750 17 6 -1.0140 -4.4214 -5.7446 18 6 -1.2403 -4.1945 -4.4033 19 6 -0.2529 -4.4920 -3.4762 20 8 -0.1673 -4.3889 -2.1317 21 6 2.9043 -3.7112 1.2881 22 6 3.7743 -2.4955 1.4790 23 6 3.2911 -1.4147 2.1925 24 6 4.1013 -0.3033 2.3660 25 6 5.3690 -0.3164 1.8044 26 6 5.7838 -1.4332 1.1042 27 7 4.9876 -2.4751 0.9630 28 1 -0.4850 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 2.2408 -5.7048 -0.2197 32 1 0.6915 -5.0315 0.3411 33 1 2.1273 -5.6557 -5.6086 34 1 0.3610 -5.1200 -7.2281 35 1 -1.7842 -4.1889 -6.4652 36 1 -2.1848 -3.7860 -4.0755 37 1 3.5245 -4.6073 1.2998 38 1 2.1731 -3.7648 2.0947 39 1 2.2963 -1.4372 2.6121 40 1 3.7518 0.5542 2.9221 41 1 6.0257 0.5336 1.9166 42 1 6.7712 -1.4530 0.6672 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081160084.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:39 Heat of formation + Delta-G solvation = 99.569013 kcal Electronic energy + Delta-G solvation = -26959.442248 eV Core-core repulsion = 23292.841211 eV Total energy + Delta-G solvation = -3666.601038 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.88901 -39.65224 -37.87660 -36.72900 -34.37409 -32.79038 -31.81679 -31.34900 -30.48360 -29.70835 -27.77611 -26.93615 -24.27562 -23.02805 -22.69158 -22.38817 -21.80871 -21.03008 -20.09804 -17.82114 -16.97686 -16.84754 -16.31520 -16.21529 -15.67175 -15.45899 -14.92121 -14.64297 -14.40858 -14.06849 -13.82608 -13.72709 -13.40629 -12.90925 -12.62702 -12.41777 -12.24691 -12.23871 -12.11212 -11.94548 -11.68310 -11.29058 -11.17659 -11.10978 -10.88859 -10.71657 -10.56455 -10.11904 -9.96169 -9.43753 -8.93346 -8.69306 -8.61508 -8.56098 -8.22863 -7.86511 -7.55854 -6.14552 -4.07711 0.90034 1.41235 1.88280 2.14057 2.68024 2.88566 3.24507 3.30804 3.35738 3.82132 4.08072 4.31130 4.48309 4.73919 4.94863 4.99713 5.02578 5.23438 5.24545 5.27736 5.31662 5.47691 5.52889 5.56366 5.63953 5.69619 5.77174 5.87466 5.97190 6.05129 6.13178 6.23696 6.38807 6.42281 6.46424 6.51227 6.52190 6.80282 6.87609 6.93908 7.01677 7.09477 7.47599 7.65164 7.85003 7.94595 8.01307 8.31921 8.82115 8.91867 9.48206 10.95157 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014320 B = 0.004218 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.840595 B = 6637.395457 C = 7521.014635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.258 1.258 7 C -0.496 4.496 8 H 0.075 0.925 9 C 0.182 3.818 10 N -0.524 5.524 11 C 0.143 3.857 12 C 0.284 3.716 13 N -0.473 5.473 14 C 0.026 3.974 15 C -0.066 4.066 16 C -0.126 4.126 17 C -0.104 4.104 18 C -0.089 4.089 19 C 0.009 3.991 20 O -0.206 6.206 21 C 0.121 3.879 22 C 0.158 3.842 23 C -0.083 4.083 24 C -0.103 4.103 25 C -0.178 4.178 26 C 0.068 3.932 27 N -0.474 5.474 28 H 0.262 0.738 29 H 0.035 0.965 30 H 0.000 1.000 31 H 0.112 0.888 32 H 0.061 0.939 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.133 0.867 37 H 0.079 0.921 38 H 0.045 0.955 39 H 0.128 0.872 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.811 -8.076 -2.246 8.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.705 3.295 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.183 1.183 7 C -0.534 4.534 8 H 0.093 0.907 9 C 0.058 3.942 10 N -0.251 5.251 11 C 0.013 3.987 12 C 0.072 3.928 13 N -0.203 5.203 14 C -0.086 4.086 15 C -0.085 4.085 16 C -0.145 4.145 17 C -0.123 4.123 18 C -0.108 4.108 19 C -0.042 4.042 20 O -0.096 6.096 21 C -0.007 4.007 22 C 0.018 3.982 23 C -0.104 4.104 24 C -0.129 4.129 25 C -0.199 4.199 26 C -0.087 4.087 27 N -0.184 5.184 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.017 0.983 31 H 0.130 0.870 32 H 0.079 0.921 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.153 0.847 36 H 0.151 0.849 37 H 0.098 0.902 38 H 0.063 0.937 39 H 0.146 0.854 40 H 0.138 0.862 41 H 0.135 0.865 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 1.903 -8.815 -3.045 9.518 hybrid contribution -1.308 2.326 0.740 2.769 sum 0.595 -6.489 -2.305 6.912 Atomic orbital electron populations 1.69953 1.06012 1.26979 1.49967 1.24891 0.94667 0.99054 0.95451 0.86872 0.79850 0.83058 0.79671 1.20373 1.21611 1.18301 1.21411 0.94098 0.89420 1.48431 0.90692 1.20004 0.89899 0.87470 0.96854 1.62082 1.30777 1.02013 1.30203 1.20523 0.98244 0.96086 0.83800 1.26306 0.78383 0.90267 0.97816 1.70652 1.29917 1.23152 0.96594 1.19983 0.91166 1.02767 0.94656 1.20262 0.99817 0.99595 0.88793 1.20951 0.93368 1.00718 0.99495 1.20915 0.97790 0.99518 0.94036 1.19892 0.97861 1.02314 0.90717 1.20367 0.98482 1.03325 0.81984 1.84604 1.36144 1.67945 1.20929 1.20691 0.94785 0.95175 0.90047 1.20520 0.90636 0.95006 0.92071 1.21672 0.98692 0.93084 0.96954 1.21286 0.93919 0.97830 0.99853 1.21866 0.97403 0.99507 1.01090 1.22322 0.98916 0.89719 0.97769 1.67330 1.04906 1.28329 1.17842 0.92807 0.94699 0.98256 0.87004 0.92125 0.84975 0.84979 0.84658 0.84915 0.90223 0.93691 0.85378 0.86217 0.86456 0.84200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.42 13.29 55.43 0.74 -24.68 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.88 21.08 28.70 -169.99 -4.88 16.20 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.26 -5.66 5.36 56.52 0.30 -5.36 16 7 C -0.50 -13.10 5.77 -34.44 -0.20 -13.30 16 8 H 0.08 2.03 4.93 -52.48 -0.26 1.77 16 9 C 0.18 4.50 4.55 -4.98 -0.02 4.48 16 10 N -0.52 -10.91 4.55 -238.96 -1.09 -12.00 16 11 C 0.14 2.47 5.59 -4.97 -0.03 2.44 16 12 C 0.28 5.62 6.85 -13.09 -0.09 5.53 16 13 N -0.47 -9.56 11.34 -8.71 -0.10 -9.65 16 14 C 0.03 0.49 7.24 -84.71 -0.61 -0.13 16 15 C -0.07 -0.97 10.10 -39.28 -0.40 -1.37 16 16 C -0.13 -1.51 10.02 -39.61 -0.40 -1.90 16 17 C -0.10 -1.26 10.03 -39.52 -0.40 -1.65 16 18 C -0.09 -1.34 10.06 -39.54 -0.40 -1.73 16 19 C 0.01 0.18 7.43 -38.64 -0.29 -0.11 16 20 O -0.21 -4.23 9.77 3.62 0.04 -4.19 16 21 C 0.12 2.19 5.28 -4.97 -0.03 2.17 16 22 C 0.16 3.15 4.01 -82.58 -0.33 2.82 16 23 C -0.08 -1.64 6.30 -39.44 -0.25 -1.89 16 24 C -0.10 -1.91 8.03 -39.28 -0.32 -2.23 16 25 C -0.18 -3.10 10.11 -39.44 -0.40 -3.50 16 26 C 0.07 1.23 11.18 -17.55 -0.20 1.03 16 27 N -0.47 -9.61 10.16 -9.47 -0.10 -9.70 16 28 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.04 0.97 6.17 -51.93 -0.32 0.64 16 30 H 0.00 -0.01 7.98 -51.93 -0.41 -0.42 16 31 H 0.11 1.63 7.93 -51.93 -0.41 1.21 16 32 H 0.06 0.94 8.12 -51.93 -0.42 0.51 16 33 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 35 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.13 1.75 8.06 -52.49 -0.42 1.32 16 37 H 0.08 1.27 7.93 -51.93 -0.41 0.86 16 38 H 0.05 0.74 7.91 -51.93 -0.41 0.33 16 39 H 0.13 2.53 7.98 -52.49 -0.42 2.11 16 40 H 0.12 2.05 7.60 -52.48 -0.40 1.65 16 41 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 42 H 0.14 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 348.59 15.07 5.25 5.25 Total: -1.00 -32.73 348.59 -9.82 -42.54 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -5.24 Total: 4.00 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -4.44 Total: -7.76 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -0.55 Total: -56.04 kcal Atomic # 8 Polarization: -4.23 SS G_CDS: 0.04 Total: -4.19 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.88 Total: 16.20 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.73 -9.82 -42.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081160084.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.110 kcal (2) G-P(sol) polarization free energy of solvation -32.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds