Wall clock time and date at job start Tue Mar 31 2020 13:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00169 * 2 1 4 4 H 1.48500 * 109.47317 * 239.99795 * 3 2 1 5 5 H 1.48496 * 109.46902 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47011 * 119.99871 * 3 2 1 7 7 C 1.37879 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99912 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00305 * 359.97438 * 7 2 1 10 10 N 1.46898 * 109.47155 * 180.02562 * 9 7 2 11 11 C 1.46901 * 110.99720 * 193.95501 * 10 9 7 12 12 C 1.50704 * 109.47259 * 66.04641 * 11 10 9 13 13 N 1.29900 * 124.85820 * 89.69716 * 12 11 10 14 14 C 1.36058 * 108.80026 * 179.89349 * 13 12 11 15 15 C 1.39584 * 133.80445 * 180.09733 * 14 13 12 16 16 C 1.37680 * 119.73284 * 180.26918 * 15 14 13 17 17 C 1.38725 * 120.42083 * 0.03740 * 16 15 14 18 18 C 1.37914 * 120.47399 * 359.96249 * 17 16 15 19 19 C 1.38674 * 119.87236 * 0.02562 * 18 17 16 20 20 O 1.34230 * 124.85180 * 269.99522 * 12 11 10 21 21 C 1.46898 * 111.00465 * 70.00178 * 10 9 7 22 22 C 1.50707 * 109.46592 * 293.95579 * 21 10 9 23 23 C 1.38227 * 119.62024 * 94.97729 * 22 21 10 24 24 C 1.38627 * 119.15702 * 179.78495 * 23 22 21 25 25 C 1.38669 * 118.42389 * 0.47826 * 24 23 22 26 26 C 1.38186 * 119.16143 * 359.49762 * 25 24 23 27 27 N 1.31856 * 119.61172 * 274.99481 * 22 21 10 28 28 H 0.96999 * 120.00005 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47171 * 59.99704 * 9 7 2 30 30 H 1.08997 * 109.46773 * 300.00148 * 9 7 2 31 31 H 1.09005 * 109.47080 * 186.04552 * 11 10 9 32 32 H 1.08999 * 109.47458 * 306.04195 * 11 10 9 33 33 H 1.08000 * 120.13933 * 0.30480 * 15 14 13 34 34 H 1.08000 * 119.79718 * 180.02562 * 16 15 14 35 35 H 1.08000 * 119.76278 * 179.97438 * 17 16 15 36 36 H 1.07995 * 120.06209 * 180.02562 * 18 17 16 37 37 H 1.08993 * 109.47549 * 173.95144 * 21 10 9 38 38 H 1.08997 * 109.47171 * 53.94721 * 21 10 9 39 39 H 1.07998 * 120.41916 * 359.97438 * 23 22 21 40 40 H 1.08008 * 120.78688 * 180.22921 * 24 23 22 41 41 H 1.08002 * 120.42244 * 179.78279 * 25 24 23 42 42 H 1.07996 * 119.61757 * 180.25243 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5361 -4.8807 -0.3313 12 6 1.0427 -4.8309 -1.7544 13 7 1.7294 -5.2044 -2.7918 14 6 0.9722 -5.0228 -3.9075 15 6 1.1873 -5.2472 -5.2683 16 6 0.1958 -4.9464 -6.1750 17 6 -1.0140 -4.4214 -5.7446 18 6 -1.2403 -4.1945 -4.4033 19 6 -0.2529 -4.4920 -3.4762 20 8 -0.1673 -4.3889 -2.1317 21 6 2.9043 -3.7112 1.2881 22 6 3.7743 -2.4955 1.4790 23 6 3.2911 -1.4147 2.1925 24 6 4.1013 -0.3033 2.3660 25 6 5.3690 -0.3164 1.8044 26 6 5.7838 -1.4332 1.1042 27 7 4.9876 -2.4751 0.9630 28 1 -0.4850 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 2.2408 -5.7048 -0.2197 32 1 0.6915 -5.0315 0.3411 33 1 2.1273 -5.6557 -5.6086 34 1 0.3610 -5.1200 -7.2281 35 1 -1.7842 -4.1889 -6.4652 36 1 -2.1848 -3.7860 -4.0755 37 1 3.5245 -4.6073 1.2998 38 1 2.1731 -3.7648 2.0947 39 1 2.2963 -1.4372 2.6121 40 1 3.7518 0.5542 2.9221 41 1 6.0257 0.5336 1.9166 42 1 6.7712 -1.4530 0.6672 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081160084.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:38 Heat of formation + Delta-G solvation = 75.877741 kcal Electronic energy + Delta-G solvation = -26960.469579 eV Core-core repulsion = 23292.841211 eV Total energy + Delta-G solvation = -3667.628368 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.23502 -41.12619 -39.06797 -38.25260 -35.76306 -34.76272 -33.24488 -32.81841 -31.62061 -31.07048 -29.60167 -28.29605 -25.93770 -24.45973 -24.14111 -23.84566 -23.07887 -22.43649 -21.67551 -19.08056 -18.69916 -18.23131 -17.86342 -17.64346 -17.16029 -16.74444 -16.52452 -16.10267 -16.05585 -15.43633 -15.25346 -15.00707 -14.71640 -14.42022 -14.14368 -13.98076 -13.89001 -13.57410 -13.46608 -13.30647 -13.08488 -12.91648 -12.66493 -12.49393 -12.45997 -12.41282 -12.18301 -11.79630 -11.48307 -11.38304 -10.64075 -10.40689 -10.12294 -9.79747 -9.49435 -9.38892 -9.18055 -8.20600 -6.19094 -0.31991 0.24232 0.45169 0.67604 1.33740 1.34538 1.37315 1.42568 1.59099 2.36800 2.64956 2.78924 2.98637 3.16293 3.47036 3.53757 3.62718 3.91070 4.01754 4.09615 4.17371 4.18413 4.25713 4.34500 4.37760 4.41441 4.47069 4.53540 4.58323 4.70687 4.91646 4.97232 5.05268 5.07576 5.11905 5.15768 5.23329 5.35230 5.36552 5.45717 5.55191 5.65241 5.75212 5.97960 6.07554 6.17515 6.42889 6.61689 6.85786 7.36165 7.41251 8.89673 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014320 B = 0.004218 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.840595 B = 6637.395457 C = 7521.014635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.016 3.984 3 Si 0.924 3.076 4 H -0.291 1.291 5 H -0.293 1.293 6 H -0.224 1.224 7 C -0.492 4.492 8 H 0.071 0.929 9 C 0.203 3.797 10 N -0.538 5.538 11 C 0.144 3.856 12 C 0.261 3.739 13 N -0.491 5.491 14 C -0.010 4.010 15 C -0.078 4.078 16 C -0.108 4.108 17 C -0.083 4.083 18 C -0.110 4.110 19 C -0.028 4.028 20 O -0.231 6.231 21 C 0.119 3.881 22 C 0.142 3.858 23 C -0.101 4.101 24 C -0.108 4.108 25 C -0.177 4.177 26 C 0.063 3.937 27 N -0.497 5.497 28 H 0.260 0.740 29 H -0.002 1.002 30 H -0.018 1.018 31 H 0.141 0.859 32 H 0.076 0.924 33 H 0.149 0.851 34 H 0.180 0.820 35 H 0.182 0.818 36 H 0.143 0.857 37 H 0.103 0.897 38 H 0.058 0.942 39 H 0.117 0.883 40 H 0.134 0.866 41 H 0.153 0.847 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.182 -7.904 -3.718 9.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.182 4.182 3 Si 0.749 3.251 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.147 1.147 7 C -0.531 4.531 8 H 0.089 0.911 9 C 0.077 3.923 10 N -0.264 5.264 11 C 0.016 3.984 12 C 0.049 3.951 13 N -0.222 5.222 14 C -0.122 4.122 15 C -0.097 4.097 16 C -0.127 4.127 17 C -0.101 4.101 18 C -0.129 4.129 19 C -0.078 4.078 20 O -0.123 6.123 21 C -0.008 4.008 22 C 0.003 3.997 23 C -0.122 4.122 24 C -0.134 4.134 25 C -0.197 4.197 26 C -0.092 4.092 27 N -0.207 5.207 28 H 0.069 0.931 29 H 0.016 0.984 30 H -0.001 1.001 31 H 0.159 0.841 32 H 0.094 0.906 33 H 0.166 0.834 34 H 0.198 0.802 35 H 0.199 0.801 36 H 0.161 0.839 37 H 0.121 0.879 38 H 0.076 0.924 39 H 0.135 0.865 40 H 0.152 0.848 41 H 0.171 0.829 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 3.287 -8.666 -4.500 10.303 hybrid contribution -1.680 2.208 1.052 2.968 sum 1.607 -6.458 -3.448 7.495 Atomic orbital electron populations 1.70076 1.07425 1.27359 1.52087 1.25554 0.95214 1.01953 0.95502 0.86151 0.78984 0.79586 0.80329 1.21769 1.21912 1.14678 1.21560 0.93862 0.90169 1.47476 0.91060 1.19572 0.89768 0.88812 0.94149 1.61929 1.30142 1.02431 1.31908 1.20709 0.99365 0.95222 0.83137 1.26670 0.78547 0.91236 0.98619 1.70559 1.30645 1.23530 0.97454 1.20486 0.91303 1.04546 0.95815 1.20708 1.01574 0.99812 0.87584 1.21548 0.92031 0.97925 1.01222 1.21544 0.98780 0.96520 0.93248 1.20364 0.97803 1.03082 0.91644 1.21028 1.00054 1.05015 0.81658 1.84543 1.36734 1.68612 1.22407 1.20820 0.94989 0.95820 0.89197 1.20733 0.90986 0.95655 0.92373 1.21694 0.98666 0.93968 0.97824 1.21594 0.94398 0.97759 0.99616 1.22251 0.97236 1.00358 0.99839 1.22936 0.99799 0.89337 0.97163 1.67368 1.05264 1.29636 1.18413 0.93116 0.98393 1.00074 0.84105 0.90593 0.83355 0.80227 0.80062 0.83921 0.87855 0.92425 0.86525 0.84787 0.82941 0.81231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.95 13.29 21.45 0.28 -54.67 16 2 C 0.02 0.90 5.46 84.66 0.46 1.36 16 3 Si 0.92 43.14 28.70 68.60 1.97 45.11 16 4 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 5 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 6 H -0.22 -9.06 5.36 99.48 0.53 -8.53 16 7 C -0.49 -26.68 5.77 25.60 0.15 -26.53 16 8 H 0.07 3.88 4.93 -2.91 -0.01 3.87 16 9 C 0.20 10.49 4.55 85.56 0.39 10.88 16 10 N -0.54 -22.96 4.55 -909.94 -4.14 -27.10 16 11 C 0.14 5.16 5.59 85.56 0.48 5.64 16 12 C 0.26 10.90 6.85 88.40 0.61 11.51 16 13 N -0.49 -20.65 11.34 -296.28 -3.36 -24.01 16 14 C -0.01 -0.39 7.24 39.32 0.28 -0.10 16 15 C -0.08 -2.21 10.10 22.46 0.23 -1.98 16 16 C -0.11 -2.21 10.02 22.25 0.22 -1.98 16 17 C -0.08 -1.74 10.03 22.31 0.22 -1.52 16 18 C -0.11 -3.28 10.06 22.30 0.22 -3.05 16 19 C -0.03 -1.08 7.43 22.88 0.17 -0.91 16 20 O -0.23 -10.23 9.77 -9.96 -0.10 -10.32 16 21 C 0.12 4.32 5.28 85.56 0.45 4.77 16 22 C 0.14 5.61 4.01 42.55 0.17 5.78 16 23 C -0.10 -3.95 6.30 22.36 0.14 -3.81 16 24 C -0.11 -3.79 8.03 22.47 0.18 -3.61 16 25 C -0.18 -5.61 10.11 22.36 0.23 -5.38 16 26 C 0.06 2.13 11.18 84.67 0.95 3.08 16 27 N -0.50 -19.53 10.16 -183.88 -1.87 -21.40 16 28 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 29 H 0.00 -0.12 6.17 -2.39 -0.01 -0.13 16 30 H -0.02 -0.99 7.98 -2.39 -0.02 -1.01 16 31 H 0.14 4.09 7.93 -2.38 -0.02 4.07 16 32 H 0.08 2.44 8.12 -2.39 -0.02 2.42 16 33 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 34 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 35 H 0.18 2.13 8.06 -2.91 -0.02 2.10 16 36 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 37 H 0.10 3.20 7.93 -2.39 -0.02 3.18 16 38 H 0.06 1.92 7.91 -2.39 -0.02 1.90 16 39 H 0.12 4.74 7.98 -2.91 -0.02 4.72 16 40 H 0.13 4.24 7.60 -2.91 -0.02 4.22 16 41 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 42 H 0.17 4.54 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -75.67 348.59 -0.79 -76.46 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.87 Total: 21.79 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: 5.55 Total: -5.87 kcal Atomic # 7 Polarization: -118.09 SS G_CDS: -9.08 Total: -127.17 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: -0.10 Total: -10.32 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 1.97 Total: 45.11 kcal Total: -75.67 -0.79 -76.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081160084.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.342 kcal (2) G-P(sol) polarization free energy of solvation -75.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds