Wall clock time and date at job start Tue Mar 31 2020 14:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86798 * 120.00240 * 2 1 4 4 H 1.48492 * 109.47329 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47101 * 300.00277 * 3 2 1 6 6 H 1.48500 * 109.47037 * 59.99941 * 3 2 1 7 7 C 1.38656 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99858 * 180.02562 * 7 2 1 9 9 O 1.34830 * 119.99925 * 0.02562 * 7 2 1 10 10 C 1.35749 * 116.99501 * 185.05748 * 9 7 2 11 11 C 1.38897 * 120.07184 * 354.48632 * 10 9 7 12 12 C 1.38079 * 119.93159 * 179.97438 * 11 10 9 13 13 C 1.38328 * 120.07017 * 359.74717 * 12 11 10 14 14 C 1.38277 * 120.13341 * 0.50609 * 13 12 11 15 15 C 1.50701 * 119.96489 * 179.76740 * 14 13 12 16 16 N 1.46904 * 109.47321 * 269.72646 * 15 14 13 17 17 C 1.46900 * 110.99789 * 179.97438 * 16 15 14 18 18 C 1.50707 * 109.46762 * 179.97438 * 17 16 15 19 19 C 1.36626 * 120.07480 * 260.02485 * 18 17 16 20 20 C 1.38919 * 120.81387 * 179.97438 * 19 18 17 21 21 C 1.36508 * 120.63018 * 0.02562 * 20 19 18 22 22 C 1.39903 * 119.63522 * 359.97438 * 21 20 19 23 23 C 1.45929 * 134.03851 * 180.02562 * 22 21 20 24 24 N 1.30240 * 107.78598 * 180.02562 * 23 22 21 25 25 N 1.39866 * 110.09551 * 359.75560 * 24 23 22 26 26 H 0.97004 * 125.45657 * 180.02562 * 25 24 23 27 27 C 1.37049 * 109.08085 * 0.40904 * 25 24 23 28 28 C 1.38129 * 120.07166 * 359.49320 * 14 13 12 29 29 H 0.97004 * 119.99560 * 359.97438 * 1 2 3 30 30 H 1.07992 * 120.03470 * 359.95555 * 11 10 9 31 31 H 1.07994 * 119.97020 * 180.02562 * 12 11 10 32 32 H 1.07998 * 119.93802 * 180.27669 * 13 12 11 33 33 H 1.09004 * 109.47070 * 149.72537 * 15 14 13 34 34 H 1.09001 * 109.47408 * 29.72938 * 15 14 13 35 35 H 1.00900 * 110.99587 * 303.95208 * 16 15 14 36 36 H 1.09000 * 109.47189 * 60.00416 * 17 16 15 37 37 H 1.08992 * 109.47381 * 299.99836 * 17 16 15 38 38 H 1.08003 * 119.59257 * 359.97294 * 19 18 17 39 39 H 1.08000 * 119.68960 * 179.97438 * 20 19 18 40 40 H 1.08000 * 120.18233 * 180.02562 * 21 20 19 41 41 H 1.07998 * 126.10241 * 359.97424 * 23 22 21 42 42 H 1.07998 * 120.03498 * 180.22859 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8909 2.3964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2009 0.0010 9 8 1.3346 -2.3685 0.0005 10 6 2.0699 -3.5045 0.1077 11 6 3.4573 -3.4394 0.0957 12 6 4.2023 -4.5968 0.2055 13 6 3.5684 -5.8197 0.3325 14 6 2.1874 -5.8883 0.3395 15 6 1.5007 -7.2232 0.4728 16 7 1.2716 -7.7915 -0.8623 17 6 0.6029 -9.0963 -0.7713 18 6 0.3845 -9.6466 -2.1572 19 6 -0.8398 -9.5350 -2.7531 20 6 -1.0580 -10.0362 -4.0302 21 6 -0.0518 -10.6521 -4.7170 22 6 1.2110 -10.7787 -4.1282 23 6 2.4777 -11.3607 -4.5598 24 7 3.3391 -11.1977 -3.5966 25 7 2.7397 -10.5299 -2.5238 26 1 3.1789 -10.2936 -1.6918 27 6 1.4300 -10.2703 -2.8330 28 6 1.4365 -4.7341 0.2301 29 1 -0.4850 0.8401 0.0004 30 1 3.9528 -2.4846 0.0004 31 1 5.2810 -4.5468 0.1966 32 1 4.1533 -6.7231 0.4227 33 1 0.5452 -7.0912 0.9804 34 1 2.1296 -7.8990 1.0523 35 1 0.7448 -7.1544 -1.4409 36 1 -0.3589 -8.9777 -0.2722 37 1 1.2259 -9.7849 -0.2006 38 1 -1.6481 -9.0511 -2.2248 39 1 -2.0332 -9.9384 -4.4839 40 1 -0.2293 -11.0388 -5.7096 41 1 2.6669 -11.8414 -5.5082 42 1 0.3579 -4.7881 0.2393 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084024790.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:56 Heat of formation + Delta-G solvation = 83.411816 kcal Electronic energy + Delta-G solvation = -25135.888323 eV Core-core repulsion = 21468.586656 eV Total energy + Delta-G solvation = -3667.301666 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.43562 -39.11583 -37.83131 -36.93265 -35.53954 -32.85990 -32.27259 -30.94899 -29.99841 -29.56212 -28.92316 -26.21125 -25.26111 -23.79516 -22.72007 -22.21025 -21.59351 -21.12915 -20.65526 -18.04997 -17.63517 -17.07114 -16.64960 -15.71550 -15.44057 -15.24774 -15.07980 -14.71757 -14.54426 -14.51938 -14.27792 -14.21413 -13.71718 -13.54946 -13.17845 -12.79337 -12.54536 -12.31177 -12.08762 -11.86827 -11.79598 -11.56804 -11.33299 -11.19078 -11.04007 -10.82337 -10.69639 -10.61758 -10.43708 -10.37210 -9.35368 -8.87584 -8.84906 -8.53327 -8.13167 -8.05750 -7.24107 -6.45663 -4.04832 0.72668 1.36626 2.07618 2.31669 2.38060 2.59739 3.11592 3.13261 3.18722 3.55809 3.95842 4.23163 4.40055 4.40732 4.60312 4.64848 4.77400 4.99912 5.00975 5.06370 5.14359 5.24455 5.27510 5.34684 5.51123 5.56118 5.68075 5.74258 5.75639 5.80249 5.94552 6.17071 6.19328 6.25208 6.30954 6.32822 6.63217 6.65956 6.87932 6.94106 7.06131 7.15413 7.23601 7.36558 7.38542 7.42255 7.43428 7.80895 7.99484 9.00414 9.70402 10.72604 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017682 B = 0.002371 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.117710 B =11806.104034 C =12324.908419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.391 4.391 8 H 0.092 0.908 9 O -0.180 6.180 10 C 0.153 3.847 11 C -0.230 4.230 12 C -0.077 4.077 13 C -0.189 4.189 14 C -0.048 4.048 15 C 0.106 3.894 16 N -0.681 5.681 17 C 0.098 3.902 18 C -0.103 4.103 19 C -0.065 4.065 20 C -0.160 4.160 21 C -0.041 4.041 22 C -0.188 4.188 23 C 0.071 3.929 24 N -0.252 5.252 25 N -0.498 5.498 26 H 0.442 0.558 27 C 0.155 3.845 28 C -0.184 4.184 29 H 0.269 0.731 30 H 0.126 0.874 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.037 0.963 34 H 0.075 0.925 35 H 0.349 0.651 36 H 0.044 0.956 37 H 0.073 0.927 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.195 0.805 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.134 -21.276 -5.500 21.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.084 6.084 10 C 0.100 3.900 11 C -0.249 4.249 12 C -0.096 4.096 13 C -0.209 4.209 14 C -0.049 4.049 15 C -0.022 4.022 16 N -0.313 5.313 17 C -0.031 4.031 18 C -0.107 4.107 19 C -0.086 4.086 20 C -0.179 4.179 21 C -0.061 4.061 22 C -0.196 4.196 23 C -0.127 4.127 24 N -0.065 5.065 25 N -0.212 5.212 26 H 0.287 0.713 27 C 0.038 3.962 28 C -0.204 4.204 29 H 0.079 0.921 30 H 0.144 0.856 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.056 0.944 34 H 0.093 0.907 35 H 0.168 0.832 36 H 0.062 0.938 37 H 0.092 0.908 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.212 0.788 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.575 -21.540 -5.155 22.204 hybrid contribution -0.909 1.493 0.377 1.788 sum 0.665 -20.047 -4.778 20.619 Atomic orbital electron populations 1.70051 1.05942 1.27508 1.46412 1.25281 0.95843 0.98804 0.96603 0.85652 0.79146 0.80415 0.78251 1.19119 1.20135 1.20152 1.21363 0.91802 0.80820 1.52757 0.89075 1.83975 1.34274 1.11409 1.78695 1.19300 0.90251 0.88014 0.92478 1.21199 0.93860 0.99013 1.10876 1.20746 0.98450 0.92420 0.97937 1.20394 0.93452 0.96760 1.10264 1.19123 0.93488 0.92550 0.99692 1.20813 0.98491 0.93225 0.89709 1.60595 1.52817 1.04207 1.13664 1.20808 0.97873 0.91902 0.92474 1.18561 0.91959 1.03033 0.97178 1.20704 0.95739 0.97171 0.95000 1.20632 0.99576 1.02290 0.95415 1.20331 0.90401 0.96358 0.99037 1.19937 0.95806 1.08434 0.95426 1.25049 0.89364 0.99610 0.98680 1.76555 1.22160 1.11988 0.95822 1.45969 1.06989 1.51471 1.16816 0.71283 1.18521 0.86089 0.96993 0.94621 1.20023 0.99060 0.90100 1.11256 0.92110 0.85637 0.87522 0.87758 0.94441 0.90674 0.83169 0.93774 0.90849 0.85428 0.85593 0.85559 0.78838 0.86915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.35 13.67 55.48 0.76 -24.59 16 2 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 20.60 29.55 -169.99 -5.02 15.57 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.39 -10.97 9.49 30.89 0.29 -10.68 16 8 H 0.09 2.38 5.20 -52.49 -0.27 2.11 16 9 O -0.18 -5.13 9.76 0.05 0.00 -5.13 16 10 C 0.15 3.70 6.65 -39.11 -0.26 3.44 16 11 C -0.23 -5.05 9.17 -39.40 -0.36 -5.42 16 12 C -0.08 -1.44 10.04 -39.61 -0.40 -1.84 16 13 C -0.19 -3.30 9.70 -39.53 -0.38 -3.68 16 14 C -0.05 -0.83 5.39 -104.65 -0.56 -1.40 16 15 C 0.11 1.41 5.81 -4.97 -0.03 1.38 16 16 N -0.68 -8.47 6.48 -116.33 -0.75 -9.23 16 17 C 0.10 0.99 5.83 -4.97 -0.03 0.96 16 18 C -0.10 -1.09 5.37 -104.83 -0.56 -1.65 16 19 C -0.06 -0.61 9.58 -39.91 -0.38 -0.99 16 20 C -0.16 -1.38 9.97 -39.95 -0.40 -1.77 16 21 C -0.04 -0.36 10.07 -39.58 -0.40 -0.76 16 22 C -0.19 -2.00 6.37 -105.21 -0.67 -2.67 16 23 C 0.07 0.69 12.28 -15.15 -0.19 0.50 16 24 N -0.25 -2.96 12.55 31.87 0.40 -2.56 16 25 N -0.50 -5.71 7.37 32.36 0.24 -5.47 16 26 H 0.44 4.46 8.96 -182.77 -1.64 2.82 16 27 C 0.16 1.79 7.04 -84.17 -0.59 1.20 16 28 C -0.18 -3.83 9.65 -39.39 -0.38 -4.21 16 29 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 30 H 0.13 2.77 5.64 -52.49 -0.30 2.48 16 31 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.04 0.48 8.08 -51.93 -0.42 0.06 16 34 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 35 H 0.35 4.72 8.72 -39.29 -0.34 4.38 16 36 H 0.04 0.40 7.98 -51.93 -0.41 -0.01 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.13 0.99 8.01 -52.48 -0.42 0.57 16 39 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.19 1.10 8.06 -52.49 -0.42 0.67 16 42 H 0.11 2.27 8.06 -52.49 -0.42 1.84 16 LS Contribution 364.05 15.07 5.49 5.49 Total: -1.00 -32.47 364.05 -10.61 -43.08 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -6.32 Total: 9.46 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: -5.40 Total: -26.62 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: 0.64 Total: -41.84 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: 0.00 Total: -5.13 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.47 -10.61 -43.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084024790.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.489 kcal (2) G-P(sol) polarization free energy of solvation -32.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds