Wall clock time and date at job start Tue Mar 31 2020 14:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38366 * 119.85977 * 2 1 4 4 C 1.37939 * 120.15864 * 180.23337 * 3 2 1 5 5 C 1.39586 * 119.88310 * 359.51234 * 4 3 2 6 6 C 1.47853 * 120.14245 * 180.23212 * 5 4 3 7 7 O 1.21555 * 119.99322 * 329.90094 * 6 5 4 8 8 N 1.34773 * 120.00401 * 149.89748 * 6 5 4 9 9 C 1.46501 * 119.99620 * 6.31125 * 8 6 5 10 10 C 1.50704 * 109.46852 * 98.48287 * 9 8 6 11 11 H 1.08000 * 119.99934 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99973 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99948 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00044 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47024 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47202 * 120.00541 * 14 12 10 17 17 H 1.48502 * 109.47106 * 240.00203 * 14 12 10 18 18 C 1.46495 * 120.00167 * 186.31646 * 8 6 5 19 19 C 1.53000 * 109.47259 * 88.95057 * 18 8 6 20 20 C 1.52997 * 109.47333 * 63.54741 * 19 18 8 21 21 C 1.52999 * 109.47177 * 183.54705 * 19 18 8 22 22 C 1.52996 * 109.46972 * 303.54836 * 19 18 8 23 23 C 1.39546 * 119.72327 * 0.25679 * 5 4 3 24 24 C 1.38102 * 119.83646 * 359.97438 * 23 5 4 25 25 Cl 1.73603 * 119.93825 * 180.02562 * 24 23 5 26 26 H 1.08997 * 109.47243 * 270.23038 * 1 2 3 27 27 H 1.09002 * 109.47241 * 30.23660 * 1 2 3 28 28 H 1.09004 * 109.46377 * 150.23104 * 1 2 3 29 29 H 1.08000 * 119.91758 * 0.02562 * 3 2 1 30 30 H 1.08005 * 120.05201 * 179.79078 * 4 3 2 31 31 H 1.09007 * 109.46990 * 218.47989 * 9 8 6 32 32 H 1.08995 * 109.47428 * 338.48302 * 9 8 6 33 33 H 0.96999 * 119.99980 * 179.97438 * 13 12 10 34 34 H 1.08999 * 109.47158 * 208.94917 * 18 8 6 35 35 H 1.09001 * 109.47081 * 328.95014 * 18 8 6 36 36 H 1.09006 * 109.47191 * 59.99681 * 20 19 18 37 37 H 1.08999 * 109.47848 * 180.02562 * 20 19 18 38 38 H 1.09008 * 109.46957 * 300.00394 * 20 19 18 39 39 H 1.08999 * 109.46922 * 59.99763 * 21 19 18 40 40 H 1.09003 * 109.47311 * 179.97438 * 21 19 18 41 41 H 1.08998 * 109.47029 * 300.00246 * 21 19 18 42 42 H 1.08998 * 109.47430 * 65.38372 * 22 19 18 43 43 H 1.09010 * 109.47282 * 185.38105 * 22 19 18 44 44 H 1.09005 * 109.47389 * 305.37235 * 22 19 18 45 45 H 1.07997 * 120.07831 * 179.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2000 0.0000 4 6 3.5753 1.2072 -0.0049 5 6 4.2771 0.0006 0.0005 6 6 5.7556 0.0016 0.0005 7 8 6.3626 0.9105 -0.5315 8 7 6.4303 -1.0050 0.5904 9 6 5.7052 -2.1675 1.1093 10 6 5.7720 -3.2899 0.1059 11 1 6.3018 -3.1514 -0.8249 12 6 5.1575 -4.4941 0.3768 13 7 4.5127 -4.6630 1.5106 14 14 5.2408 -5.8857 -0.8666 15 1 6.0188 -5.4445 -2.0519 16 1 5.9032 -7.0625 -0.2489 17 1 3.8657 -6.2563 -1.2877 18 6 7.8885 -0.9367 0.7128 19 6 8.2582 -0.2335 2.0203 20 6 7.7599 -1.0641 3.2047 21 6 9.7784 -0.0832 2.1065 22 6 7.6060 1.1500 2.0574 23 6 3.5774 -1.2068 0.0054 24 6 2.1964 -1.2006 0.0053 25 17 1.3232 -2.7011 0.0120 26 1 -0.3633 0.0041 1.0276 27 1 -0.3634 0.8879 -0.5175 28 1 -0.3632 -0.8921 -0.5103 29 1 1.6523 2.1332 0.0004 30 1 4.1113 2.1448 -0.0083 31 1 6.1592 -2.4902 2.0463 32 1 4.6637 -1.8978 1.2841 33 1 4.0801 -5.5100 1.7010 34 1 8.3007 -1.9457 0.7138 35 1 8.2979 -0.3778 -0.1287 36 1 8.2245 -2.0498 3.1783 37 1 8.0229 -0.5630 4.1363 38 1 6.6769 -1.1712 3.1433 39 1 10.1333 0.5085 1.2627 40 1 10.0418 0.4181 3.0378 41 1 10.2429 -1.0689 2.0800 42 1 6.5222 1.0400 2.0925 43 1 7.9454 1.6881 2.9426 44 1 7.8860 1.7078 1.1637 45 1 4.1145 -2.1437 0.0091 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104628258.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:00 Heat of formation + Delta-G solvation = -24.643110 kcal Electronic energy + Delta-G solvation = -26577.849076 eV Core-core repulsion = 23006.969291 eV Total energy + Delta-G solvation = -3570.879785 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.64593 -39.82779 -38.08320 -37.21425 -36.43349 -34.32016 -33.65700 -31.73335 -29.58677 -28.84889 -28.12071 -28.08377 -26.72889 -24.91331 -23.65343 -22.85716 -20.91318 -19.63010 -18.66897 -18.17376 -17.55018 -16.66961 -16.60235 -16.37472 -16.13377 -15.81177 -15.23855 -15.09342 -14.75760 -14.68197 -14.56864 -14.38677 -14.00498 -13.53697 -13.30599 -13.20079 -13.06069 -13.02401 -12.84536 -12.76154 -12.57581 -12.46687 -12.45075 -12.33287 -12.13088 -12.03180 -11.80500 -11.70243 -11.55081 -11.48384 -11.42538 -10.74615 -10.52336 -9.64521 -9.63003 -9.33047 -8.20079 -6.34411 -0.11626 0.30295 1.27079 1.36511 1.42053 1.49704 1.85220 2.27876 2.42363 2.77181 3.08676 3.61888 3.87066 3.90851 3.93854 4.02090 4.07362 4.22533 4.38338 4.56510 4.58340 4.60039 4.75505 4.78745 4.81962 4.82400 4.90344 4.93091 4.95975 5.04215 5.06416 5.08144 5.15917 5.21382 5.23821 5.25797 5.34640 5.39144 5.49021 5.52641 5.55059 5.67531 5.84817 5.88357 6.03932 6.56868 6.80795 7.27486 7.39368 8.82504 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009593 B = 0.006615 C = 0.004362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2918.095498 B = 4231.987151 C = 6417.855473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.057 4.057 3 C -0.120 4.120 4 C -0.064 4.064 5 C -0.155 4.155 6 C 0.555 3.445 7 O -0.584 6.584 8 N -0.584 5.584 9 C 0.221 3.779 10 C -0.554 4.554 11 H 0.048 0.952 12 C 0.045 3.955 13 N -0.890 5.890 14 Si 0.934 3.066 15 H -0.274 1.274 16 H -0.275 1.275 17 H -0.278 1.278 18 C 0.127 3.873 19 C -0.080 4.080 20 C -0.135 4.135 21 C -0.129 4.129 22 C -0.123 4.123 23 C -0.108 4.108 24 C -0.068 4.068 25 Cl -0.071 7.071 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.068 0.932 29 H 0.175 0.825 30 H 0.141 0.859 31 H 0.031 0.969 32 H 0.055 0.945 33 H 0.269 0.731 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.051 0.949 37 H 0.067 0.933 38 H 0.039 0.961 39 H 0.057 0.943 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.027 0.973 43 H 0.066 0.934 44 H 0.049 0.951 45 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.165 9.427 1.705 10.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.058 4.058 3 C -0.138 4.138 4 C -0.083 4.083 5 C -0.158 4.158 6 C 0.345 3.655 7 O -0.467 6.467 8 N -0.311 5.311 9 C 0.101 3.899 10 C -0.592 4.592 11 H 0.066 0.934 12 C -0.159 4.159 13 N -0.527 5.527 14 Si 0.760 3.240 15 H -0.199 1.199 16 H -0.201 1.201 17 H -0.204 1.204 18 C 0.004 3.996 19 C -0.082 4.082 20 C -0.192 4.192 21 C -0.187 4.187 22 C -0.181 4.181 23 C -0.126 4.126 24 C -0.094 4.094 25 Cl -0.042 7.042 26 H 0.106 0.894 27 H 0.117 0.883 28 H 0.087 0.913 29 H 0.192 0.808 30 H 0.159 0.841 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.046 0.954 43 H 0.085 0.915 44 H 0.069 0.931 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -3.012 9.576 1.568 10.160 hybrid contribution 0.065 -1.540 -0.636 1.667 sum -2.947 8.036 0.932 8.610 Atomic orbital electron populations 1.20976 0.87902 1.04482 1.03952 1.20379 0.98438 0.90748 0.96247 1.21225 0.92792 0.98222 1.01529 1.21433 0.94926 0.96713 0.95200 1.19970 0.93163 0.94563 1.08114 1.18378 0.87467 0.81644 0.77964 1.90628 1.70353 1.38093 1.47637 1.47990 1.07580 1.19439 1.56124 1.20105 0.93635 0.81802 0.94378 1.21499 1.35370 0.98160 1.04131 0.93403 1.25376 0.94293 0.99659 0.96524 1.69979 1.33316 1.25982 1.23414 0.85857 0.78090 0.80109 0.79900 1.19913 1.20069 1.20357 1.21521 0.79773 1.00711 0.97608 1.20932 0.97230 0.95459 0.94532 1.21893 1.00509 0.99356 0.97459 1.21735 0.92233 1.02223 1.02518 1.21737 0.98976 0.95824 1.01514 1.23152 0.93933 1.02079 0.93429 1.20918 0.92197 0.87575 1.08720 1.98337 1.75916 1.32970 1.96984 0.89392 0.88282 0.91325 0.80793 0.84078 0.95123 0.92760 0.92184 0.90922 0.91615 0.93012 0.91414 0.94230 0.92419 0.90950 0.92080 0.95402 0.91498 0.93148 0.79826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 9.60 71.24 0.68 -1.73 16 2 C -0.06 -1.64 5.89 -19.78 -0.12 -1.76 16 3 C -0.12 -3.13 9.68 22.23 0.22 -2.91 16 4 C -0.06 -2.07 9.60 22.52 0.22 -1.85 16 5 C -0.15 -6.25 5.58 -20.09 -0.11 -6.37 16 6 C 0.56 24.11 5.67 86.79 0.49 24.61 16 7 O -0.58 -26.38 14.66 -3.89 -0.06 -26.44 16 8 N -0.58 -25.03 2.01 -829.56 -1.66 -26.70 16 9 C 0.22 10.44 3.91 85.63 0.33 10.77 16 10 C -0.55 -28.30 7.48 25.60 0.19 -28.11 16 11 H 0.05 2.56 7.81 -2.91 -0.02 2.53 16 12 C 0.05 2.31 5.34 84.65 0.45 2.76 16 13 N -0.89 -46.48 13.29 21.45 0.28 -46.20 16 14 Si 0.93 41.48 29.54 68.60 2.03 43.50 16 15 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 16 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 17 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 18 C 0.13 4.78 4.59 86.38 0.40 5.18 16 19 C -0.08 -2.50 0.85 -52.18 -0.04 -2.55 16 20 C -0.13 -4.27 7.46 71.98 0.54 -3.74 16 21 C -0.13 -3.16 8.47 71.98 0.61 -2.55 16 22 C -0.12 -3.90 7.12 71.98 0.51 -3.38 16 23 C -0.11 -4.59 7.26 22.55 0.16 -4.42 16 24 C -0.07 -2.49 6.31 22.29 0.14 -2.35 16 25 Cl -0.07 -2.60 27.27 -2.72 -0.07 -2.68 16 26 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.10 1.45 8.08 -2.39 -0.02 1.43 16 28 H 0.07 1.51 6.89 -2.38 -0.02 1.49 16 29 H 0.17 2.95 8.06 -2.91 -0.02 2.93 16 30 H 0.14 4.19 7.93 -2.91 -0.02 4.16 16 31 H 0.03 1.52 5.79 -2.38 -0.01 1.50 16 32 H 0.06 2.72 4.05 -2.42 -0.01 2.71 16 33 H 0.27 13.45 8.31 -92.71 -0.77 12.68 16 34 H 0.07 2.79 8.06 -2.39 -0.02 2.77 16 35 H 0.07 2.54 7.37 -2.39 -0.02 2.52 16 36 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.04 1.46 5.84 -2.38 -0.01 1.44 16 39 H 0.06 1.36 8.14 -2.39 -0.02 1.35 16 40 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.03 0.98 6.64 -2.39 -0.02 0.97 16 43 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 44 H 0.05 1.70 7.28 -2.38 -0.02 1.68 16 45 H 0.19 8.95 3.08 -2.91 -0.01 8.94 16 Total: -1.00 -58.59 365.07 6.18 -52.41 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: 0.99 Total: 24.50 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: 4.67 Total: -18.40 kcal Atomic # 7 Polarization: -71.52 SS G_CDS: -1.38 Total: -72.90 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.06 Total: -26.44 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.50 kcal Atomic # 17 Polarization: -2.60 SS G_CDS: -0.07 Total: -2.68 kcal Total: -58.59 6.18 -52.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104628258.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.763 kcal (2) G-P(sol) polarization free energy of solvation -58.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds