Wall clock time and date at job start Tue Mar 31 2020 14:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37993 * 120.06138 * 2 1 4 4 C 1.38315 * 120.16045 * 180.29465 * 3 2 1 5 5 C 1.38494 * 120.27965 * 359.72354 * 4 3 2 6 6 Cl 1.73597 * 119.94193 * 179.97438 * 5 4 3 7 7 C 1.38062 * 120.11647 * 0.02562 * 5 4 3 8 8 C 1.39555 * 120.06378 * 179.76165 * 2 1 3 9 9 C 1.47851 * 120.13361 * 359.97438 * 8 2 1 10 10 O 1.21554 * 120.00123 * 304.61876 * 9 8 2 11 11 N 1.34779 * 119.99921 * 124.62101 * 9 8 2 12 12 C 1.46498 * 120.00017 * 354.03183 * 11 9 8 13 13 C 1.50703 * 109.46823 * 269.99818 * 12 11 9 14 14 H 1.08001 * 119.99887 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99821 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00223 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99795 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47328 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47130 * 119.99707 * 17 15 13 20 20 H 1.48500 * 109.46819 * 239.99490 * 17 15 13 21 21 C 1.46503 * 119.99632 * 174.02578 * 11 9 8 22 22 C 1.52999 * 109.47183 * 274.16175 * 21 11 9 23 23 C 1.53001 * 109.47117 * 55.09393 * 22 21 11 24 24 C 1.53004 * 109.46919 * 175.08648 * 22 21 11 25 25 C 1.52994 * 109.47274 * 295.08797 * 22 21 11 26 26 H 1.09003 * 109.47000 * 275.16503 * 1 2 3 27 27 H 1.09002 * 109.47289 * 35.16622 * 1 2 3 28 28 H 1.09002 * 109.46844 * 155.16678 * 1 2 3 29 29 H 1.08000 * 119.91734 * 359.97438 * 3 2 1 30 30 H 1.07999 * 119.85977 * 179.70008 * 4 3 2 31 31 H 1.07999 * 120.07888 * 179.97438 * 7 5 4 32 32 H 1.08992 * 109.47043 * 29.99362 * 12 11 9 33 33 H 1.08997 * 109.47060 * 150.00221 * 12 11 9 34 34 H 0.96993 * 120.00124 * 180.02562 * 16 15 13 35 35 H 1.09001 * 109.46557 * 154.16307 * 21 11 9 36 36 H 1.08997 * 109.47545 * 34.16736 * 21 11 9 37 37 H 1.08997 * 109.47265 * 64.70049 * 23 22 21 38 38 H 1.08993 * 109.47270 * 184.70782 * 23 22 21 39 39 H 1.09004 * 109.46658 * 304.70386 * 23 22 21 40 40 H 1.09004 * 109.46720 * 60.00252 * 24 22 21 41 41 H 1.08997 * 109.47084 * 179.97438 * 24 22 21 42 42 H 1.08997 * 109.47559 * 300.00389 * 24 22 21 43 43 H 1.09000 * 109.47061 * 60.00527 * 25 22 21 44 44 H 1.09007 * 109.46747 * 179.97438 * 25 22 21 45 45 H 1.09001 * 109.47565 * 299.99883 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1943 0.0000 4 6 3.5814 1.1967 -0.0062 5 6 4.2818 0.0019 -0.0066 6 17 6.0177 0.0152 -0.0150 7 6 3.6018 -1.1996 -0.0014 8 6 2.2061 -1.2078 0.0050 9 6 1.4713 -2.4907 0.0109 10 8 0.6506 -2.7171 0.8786 11 7 1.7114 -3.4093 -0.9457 12 6 2.6017 -3.0871 -2.0636 13 6 1.7975 -2.4921 -3.1907 14 1 0.7300 -2.3669 -3.0850 15 6 2.4244 -2.1085 -4.3573 16 7 3.7242 -2.2613 -4.4862 17 14 1.4277 -1.3703 -5.7541 18 1 -0.0029 -1.3056 -5.3611 19 1 1.9235 -0.0014 -6.0464 20 1 1.5700 -2.2175 -6.9653 21 6 1.0822 -4.7300 -0.8674 22 6 1.9391 -5.6525 0.0019 23 6 2.1620 -5.0029 1.3692 24 6 1.2225 -6.9919 0.1845 25 6 3.2896 -5.8851 -0.6784 26 1 -0.3633 0.0925 1.0235 27 1 -0.3634 0.8401 -0.5919 28 1 -0.3633 -0.9327 -0.4316 29 1 1.6579 2.1294 -0.0004 30 1 4.1174 2.1343 -0.0110 31 1 4.1486 -2.1310 -0.0021 32 1 3.3527 -2.3690 -1.7347 33 1 3.0945 -3.9958 -2.4092 34 1 4.1653 -1.9911 -5.3067 35 1 0.9961 -5.1513 -1.8690 36 1 0.0898 -4.6342 -0.4270 37 1 1.2080 -4.9135 1.8888 38 1 2.8403 -5.6198 1.9584 39 1 2.5964 -4.0123 1.2342 40 1 1.0638 -7.4547 -0.7896 41 1 1.8332 -7.6492 0.8034 42 1 0.2604 -6.8262 0.6692 43 1 3.8001 -4.9308 -0.8084 44 1 3.9002 -6.5419 -0.0588 45 1 3.1309 -6.3479 -1.6524 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121974001.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:27 Heat of formation + Delta-G solvation = -33.659815 kcal Electronic energy + Delta-G solvation = -26746.966326 eV Core-core repulsion = 23175.695547 eV Total energy + Delta-G solvation = -3571.270779 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.18257 -38.45416 -36.63744 -36.06576 -34.42675 -32.40285 -32.15251 -30.97528 -27.67910 -27.00261 -26.91376 -26.66785 -25.60468 -23.52479 -22.43106 -21.37365 -19.28402 -18.22263 -16.94209 -16.49517 -15.96703 -15.53813 -15.50459 -14.72752 -14.60277 -14.28121 -13.85452 -13.67282 -13.43019 -13.23219 -12.97571 -12.65683 -12.57008 -12.45091 -12.20108 -11.91953 -11.85810 -11.53411 -11.36785 -11.26257 -11.14349 -11.09063 -10.94716 -10.89403 -10.76700 -10.71270 -10.56258 -10.36682 -10.25805 -10.08058 -9.67083 -9.17395 -8.70082 -8.41944 -8.19111 -7.68722 -6.15795 -4.21627 1.33065 1.51562 2.40278 3.21587 3.27012 3.30870 3.35179 3.74319 4.10042 4.34628 4.97508 5.07856 5.15918 5.16502 5.18402 5.19334 5.30794 5.42153 5.54976 5.80519 5.84473 5.86631 5.90796 5.92468 5.99624 6.07413 6.11823 6.17790 6.18767 6.27174 6.33136 6.37491 6.41816 6.46585 6.48359 6.53584 6.65799 6.76016 6.79913 6.84923 7.03136 7.19779 7.52300 7.77928 8.08421 8.27391 8.77952 8.93788 9.44762 10.90911 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.007968 B = 0.006740 C = 0.005115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3513.023850 B = 4153.489596 C = 5472.782140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.034 4.034 3 C -0.118 4.118 4 C -0.097 4.097 5 C -0.042 4.042 6 Cl -0.077 7.077 7 C -0.062 4.062 8 C -0.087 4.087 9 C 0.564 3.436 10 O -0.559 6.559 11 N -0.583 5.583 12 C 0.225 3.775 13 C -0.533 4.533 14 H 0.059 0.941 15 C 0.067 3.933 16 N -0.887 5.887 17 Si 0.891 3.109 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.283 1.283 21 C 0.130 3.870 22 C -0.085 4.085 23 C -0.130 4.130 24 C -0.135 4.135 25 C -0.140 4.140 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.134 0.866 32 H 0.047 0.953 33 H 0.042 0.958 34 H 0.264 0.736 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.041 0.959 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.062 0.938 44 H 0.045 0.955 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.415 0.724 8.879 8.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.035 4.035 3 C -0.136 4.136 4 C -0.116 4.116 5 C -0.068 4.068 6 Cl -0.048 7.048 7 C -0.081 4.081 8 C -0.091 4.091 9 C 0.352 3.648 10 O -0.440 6.440 11 N -0.311 5.311 12 C 0.106 3.894 13 C -0.572 4.572 14 H 0.077 0.923 15 C -0.136 4.136 16 N -0.525 5.525 17 Si 0.719 3.281 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.209 1.209 21 C 0.007 3.993 22 C -0.086 4.086 23 C -0.188 4.188 24 C -0.193 4.193 25 C -0.197 4.197 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.149 0.851 30 H 0.148 0.852 31 H 0.152 0.848 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.065 0.935 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.522 0.605 9.152 9.187 hybrid contribution -0.055 0.464 -1.210 1.297 sum -0.577 1.070 7.943 8.035 Atomic orbital electron populations 1.20792 0.90498 1.03273 1.02258 1.19890 0.96527 0.91554 0.95536 1.20809 0.93173 0.97589 1.02043 1.21013 0.94165 0.96632 0.99783 1.20625 0.84207 0.94901 1.07077 1.98345 1.10378 1.98950 1.97107 1.20988 0.92945 0.97161 0.97049 1.19683 0.92833 0.94001 1.02554 1.17995 0.82008 0.83144 0.81667 1.90701 1.35242 1.79460 1.38591 1.48142 1.46943 1.11955 1.24108 1.19779 0.89301 0.97563 0.82773 1.21469 0.94706 1.41728 0.99281 0.92280 1.24885 0.94873 0.95510 0.98324 1.69916 1.08256 1.47153 1.27215 0.86540 0.80458 0.79006 0.82103 1.19698 1.20849 1.20899 1.21389 0.95789 0.82355 0.99814 1.20966 0.96261 0.95221 0.96174 1.21853 1.01447 0.99987 0.95488 1.21779 1.00020 0.96116 1.01384 1.21925 0.96047 1.01944 0.99822 0.90786 0.91599 0.90907 0.85079 0.85187 0.84790 0.93533 0.94047 0.92654 0.90218 0.91038 0.92223 0.93962 0.92939 0.92709 0.92896 0.92769 0.91862 0.93542 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.78 9.28 36.01 0.33 -1.44 16 2 C -0.03 -0.60 5.91 -104.22 -0.62 -1.21 16 3 C -0.12 -1.77 9.71 -39.64 -0.38 -2.16 16 4 C -0.10 -1.47 9.82 -39.46 -0.39 -1.85 16 5 C -0.04 -0.70 6.31 -39.55 -0.25 -0.95 16 6 Cl -0.08 -1.19 28.95 -51.86 -1.50 -2.69 16 7 C -0.06 -1.15 7.31 -39.15 -0.29 -1.44 16 8 C -0.09 -1.69 4.93 -104.97 -0.52 -2.21 16 9 C 0.56 11.43 3.93 -12.33 -0.05 11.39 16 10 O -0.56 -11.80 13.88 5.32 0.07 -11.72 16 11 N -0.58 -11.80 2.00 -176.17 -0.35 -12.15 16 12 C 0.23 5.20 4.04 -5.19 -0.02 5.18 16 13 C -0.53 -13.77 9.39 -34.44 -0.32 -14.09 16 14 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 15 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 16 N -0.89 -24.33 13.29 55.43 0.74 -23.59 16 17 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 18 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 21 C 0.13 2.33 4.59 -4.04 -0.02 2.31 16 22 C -0.09 -1.31 0.85 -154.51 -0.13 -1.44 16 23 C -0.13 -2.08 7.14 37.16 0.27 -1.81 16 24 C -0.14 -1.72 8.47 37.16 0.31 -1.41 16 25 C -0.14 -2.16 7.56 37.15 0.28 -1.88 16 26 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.07 0.90 8.12 -51.93 -0.42 0.48 16 28 H 0.07 1.33 6.60 -51.93 -0.34 0.99 16 29 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 30 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 31 H 0.13 2.46 7.51 -52.49 -0.39 2.06 16 32 H 0.05 1.12 4.48 -51.93 -0.23 0.89 16 33 H 0.04 1.00 6.46 -51.93 -0.34 0.66 16 34 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.08 1.44 8.04 -51.93 -0.42 1.02 16 36 H 0.07 1.29 7.47 -51.93 -0.39 0.91 16 37 H 0.06 0.99 7.67 -51.93 -0.40 0.59 16 38 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.05 0.93 5.63 -51.93 -0.29 0.64 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 1.10 6.22 -51.93 -0.32 0.77 16 44 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 45 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 371.11 15.07 5.59 5.59 Total: -1.00 -27.96 371.11 -9.25 -37.22 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -6.90 Total: 3.01 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -1.89 Total: -11.34 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.38 Total: -35.74 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.07 Total: -11.72 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -1.50 Total: -2.69 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -27.96 -9.25 -37.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121974001.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.556 kcal (2) G-P(sol) polarization free energy of solvation -27.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds