Wall clock time and date at job start Tue Mar 31 2020 14:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37993 * 120.06138 * 2 1 4 4 C 1.38315 * 120.16045 * 180.29465 * 3 2 1 5 5 C 1.38494 * 120.27965 * 359.72354 * 4 3 2 6 6 Cl 1.73597 * 119.94193 * 179.97438 * 5 4 3 7 7 C 1.38062 * 120.11647 * 0.02562 * 5 4 3 8 8 C 1.39555 * 120.06378 * 179.76165 * 2 1 3 9 9 C 1.47851 * 120.13361 * 359.97438 * 8 2 1 10 10 O 1.21554 * 120.00123 * 304.61876 * 9 8 2 11 11 N 1.34779 * 119.99921 * 124.62101 * 9 8 2 12 12 C 1.46498 * 120.00017 * 354.03183 * 11 9 8 13 13 C 1.50703 * 109.46823 * 269.99818 * 12 11 9 14 14 H 1.08001 * 119.99887 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99821 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00223 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99795 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47328 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47130 * 119.99707 * 17 15 13 20 20 H 1.48500 * 109.46819 * 239.99490 * 17 15 13 21 21 C 1.46503 * 119.99632 * 174.02578 * 11 9 8 22 22 C 1.52999 * 109.47183 * 274.16175 * 21 11 9 23 23 C 1.53001 * 109.47117 * 55.09393 * 22 21 11 24 24 C 1.53004 * 109.46919 * 175.08648 * 22 21 11 25 25 C 1.52994 * 109.47274 * 295.08797 * 22 21 11 26 26 H 1.09003 * 109.47000 * 275.16503 * 1 2 3 27 27 H 1.09002 * 109.47289 * 35.16622 * 1 2 3 28 28 H 1.09002 * 109.46844 * 155.16678 * 1 2 3 29 29 H 1.08000 * 119.91734 * 359.97438 * 3 2 1 30 30 H 1.07999 * 119.85977 * 179.70008 * 4 3 2 31 31 H 1.07999 * 120.07888 * 179.97438 * 7 5 4 32 32 H 1.08992 * 109.47043 * 29.99362 * 12 11 9 33 33 H 1.08997 * 109.47060 * 150.00221 * 12 11 9 34 34 H 0.96993 * 120.00124 * 180.02562 * 16 15 13 35 35 H 1.09001 * 109.46557 * 154.16307 * 21 11 9 36 36 H 1.08997 * 109.47545 * 34.16736 * 21 11 9 37 37 H 1.08997 * 109.47265 * 64.70049 * 23 22 21 38 38 H 1.08993 * 109.47270 * 184.70782 * 23 22 21 39 39 H 1.09004 * 109.46658 * 304.70386 * 23 22 21 40 40 H 1.09004 * 109.46720 * 60.00252 * 24 22 21 41 41 H 1.08997 * 109.47084 * 179.97438 * 24 22 21 42 42 H 1.08997 * 109.47559 * 300.00389 * 24 22 21 43 43 H 1.09000 * 109.47061 * 60.00527 * 25 22 21 44 44 H 1.09007 * 109.46747 * 179.97438 * 25 22 21 45 45 H 1.09001 * 109.47565 * 299.99883 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1943 0.0000 4 6 3.5814 1.1967 -0.0062 5 6 4.2818 0.0019 -0.0066 6 17 6.0177 0.0152 -0.0150 7 6 3.6018 -1.1996 -0.0014 8 6 2.2061 -1.2078 0.0050 9 6 1.4713 -2.4907 0.0109 10 8 0.6506 -2.7171 0.8786 11 7 1.7114 -3.4093 -0.9457 12 6 2.6017 -3.0871 -2.0636 13 6 1.7975 -2.4921 -3.1907 14 1 0.7300 -2.3669 -3.0850 15 6 2.4244 -2.1085 -4.3573 16 7 3.7242 -2.2613 -4.4862 17 14 1.4277 -1.3703 -5.7541 18 1 -0.0029 -1.3056 -5.3611 19 1 1.9235 -0.0014 -6.0464 20 1 1.5700 -2.2175 -6.9653 21 6 1.0822 -4.7300 -0.8674 22 6 1.9391 -5.6525 0.0019 23 6 2.1620 -5.0029 1.3692 24 6 1.2225 -6.9919 0.1845 25 6 3.2896 -5.8851 -0.6784 26 1 -0.3633 0.0925 1.0235 27 1 -0.3634 0.8401 -0.5919 28 1 -0.3633 -0.9327 -0.4316 29 1 1.6579 2.1294 -0.0004 30 1 4.1174 2.1343 -0.0110 31 1 4.1486 -2.1310 -0.0021 32 1 3.3527 -2.3690 -1.7347 33 1 3.0945 -3.9958 -2.4092 34 1 4.1653 -1.9911 -5.3067 35 1 0.9961 -5.1513 -1.8690 36 1 0.0898 -4.6342 -0.4270 37 1 1.2080 -4.9135 1.8888 38 1 2.8403 -5.6198 1.9584 39 1 2.5964 -4.0123 1.2342 40 1 1.0638 -7.4547 -0.7896 41 1 1.8332 -7.6492 0.8034 42 1 0.2604 -6.8262 0.6692 43 1 3.8001 -4.9308 -0.8084 44 1 3.9002 -6.5419 -0.0588 45 1 3.1309 -6.3479 -1.6524 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121974001.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:27 Heat of formation + Delta-G solvation = -45.494210 kcal Electronic energy + Delta-G solvation = -26747.479504 eV Core-core repulsion = 23175.695547 eV Total energy + Delta-G solvation = -3571.783957 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.65975 -39.80032 -38.03337 -37.37205 -36.09835 -34.29157 -33.46837 -32.30117 -29.48096 -28.31629 -28.10838 -28.01607 -27.04049 -25.19879 -24.00520 -22.69493 -20.69166 -19.60660 -18.73961 -18.15841 -17.45134 -17.04530 -16.90918 -16.44231 -15.99936 -15.74295 -15.16621 -14.99086 -14.72777 -14.57429 -14.38101 -14.30528 -14.09071 -13.82313 -13.60703 -13.27000 -13.24230 -13.07291 -12.81481 -12.65503 -12.61256 -12.49100 -12.48548 -12.39836 -12.15179 -12.04991 -12.02710 -11.94299 -11.63390 -11.53807 -11.47591 -10.78840 -10.54592 -9.91421 -9.50231 -9.34691 -8.17415 -6.30278 -0.00241 0.20390 1.10997 1.37104 1.40415 1.50171 1.77134 2.25264 2.43185 2.70008 3.13000 3.57299 3.78438 3.88538 3.89815 3.91661 4.04500 4.11130 4.30626 4.53349 4.56118 4.60044 4.63913 4.74848 4.76905 4.79902 4.84823 4.88105 4.92314 4.96334 5.04801 5.06359 5.07301 5.14745 5.19948 5.21910 5.23896 5.32820 5.45782 5.49741 5.51342 5.67303 5.78080 5.88448 6.10853 6.55494 6.82746 7.27674 7.41706 8.87633 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.007968 B = 0.006740 C = 0.005115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3513.023850 B = 4153.489596 C = 5472.782140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.051 4.051 3 C -0.109 4.109 4 C -0.091 4.091 5 C -0.053 4.053 6 Cl -0.068 7.068 7 C -0.078 4.078 8 C -0.119 4.119 9 C 0.565 3.435 10 O -0.573 6.573 11 N -0.585 5.585 12 C 0.244 3.756 13 C -0.541 4.541 14 H 0.046 0.954 15 C 0.026 3.974 16 N -0.914 5.914 17 Si 0.947 3.053 18 H -0.271 1.271 19 H -0.278 1.278 20 H -0.278 1.278 21 C 0.126 3.874 22 C -0.081 4.081 23 C -0.123 4.123 24 C -0.129 4.129 25 C -0.135 4.135 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.040 0.960 29 H 0.172 0.828 30 H 0.164 0.836 31 H 0.121 0.879 32 H 0.037 0.963 33 H 0.027 0.973 34 H 0.266 0.734 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.050 0.950 38 H 0.062 0.938 39 H 0.026 0.974 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.036 0.964 44 H 0.068 0.932 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.747 1.775 9.038 9.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.052 4.052 3 C -0.126 4.126 4 C -0.110 4.110 5 C -0.080 4.080 6 Cl -0.039 7.039 7 C -0.097 4.097 8 C -0.122 4.122 9 C 0.354 3.646 10 O -0.456 6.456 11 N -0.313 5.313 12 C 0.124 3.876 13 C -0.580 4.580 14 H 0.065 0.935 15 C -0.175 4.175 16 N -0.553 5.553 17 Si 0.773 3.227 18 H -0.196 1.196 19 H -0.204 1.204 20 H -0.204 1.204 21 C 0.003 3.997 22 C -0.082 4.082 23 C -0.180 4.180 24 C -0.187 4.187 25 C -0.192 4.192 26 H 0.105 0.895 27 H 0.110 0.890 28 H 0.059 0.941 29 H 0.190 0.810 30 H 0.181 0.819 31 H 0.139 0.861 32 H 0.055 0.945 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.046 0.954 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.055 0.945 44 H 0.087 0.913 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.861 1.643 9.321 9.504 hybrid contribution 0.071 0.160 -1.214 1.226 sum -0.789 1.803 8.108 8.343 Atomic orbital electron populations 1.20777 0.89653 1.02606 1.03268 1.20255 0.97438 0.91847 0.95702 1.21253 0.93283 0.98150 0.99952 1.21454 0.94475 0.97144 0.97881 1.20824 0.84879 0.95118 1.07156 1.98342 1.09551 1.98938 1.97071 1.20939 0.92890 0.97560 0.98323 1.19791 0.93324 0.94249 1.04823 1.18196 0.81704 0.83494 0.81168 1.90665 1.36042 1.79884 1.38980 1.48075 1.46734 1.12977 1.23560 1.19368 0.89085 0.96317 0.82856 1.21648 0.94243 1.41767 1.00297 0.93542 1.25538 0.95714 0.95903 1.00347 1.70007 1.09419 1.48048 1.27854 0.85663 0.79116 0.78376 0.79515 1.19577 1.20393 1.20386 1.21539 0.96084 0.81994 1.00084 1.20939 0.96029 0.96042 0.95150 1.21765 1.01177 0.99081 0.95977 1.21731 1.00122 0.94494 1.02309 1.21861 0.96157 1.00954 1.00239 0.89490 0.89036 0.94069 0.81039 0.81867 0.86083 0.94502 0.95464 0.92527 0.90836 0.91518 0.93098 0.91893 0.95441 0.91947 0.91048 0.92422 0.94485 0.91308 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.29 9.28 71.24 0.66 -2.63 16 2 C -0.05 -1.76 5.91 -19.60 -0.12 -1.88 16 3 C -0.11 -2.98 9.71 22.23 0.22 -2.76 16 4 C -0.09 -2.54 9.82 22.35 0.22 -2.32 16 5 C -0.05 -1.77 6.31 22.29 0.14 -1.63 16 6 Cl -0.07 -2.06 28.95 -2.72 -0.08 -2.14 16 7 C -0.08 -2.96 7.31 22.55 0.16 -2.80 16 8 C -0.12 -4.70 4.93 -20.09 -0.10 -4.80 16 9 C 0.57 23.80 3.93 86.79 0.34 24.15 16 10 O -0.57 -25.02 13.88 -3.88 -0.05 -25.08 16 11 N -0.59 -24.70 2.00 -829.57 -1.66 -26.36 16 12 C 0.24 11.73 4.04 85.63 0.35 12.08 16 13 C -0.54 -28.54 9.39 25.60 0.24 -28.30 16 14 H 0.05 2.52 7.81 -2.91 -0.02 2.50 16 15 C 0.03 1.35 5.46 84.66 0.46 1.82 16 16 N -0.91 -50.62 13.29 21.45 0.28 -50.33 16 17 Si 0.95 42.33 29.54 68.60 2.03 44.35 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 19 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 21 C 0.13 4.64 4.59 86.38 0.40 5.04 16 22 C -0.08 -2.47 0.85 -52.18 -0.04 -2.51 16 23 C -0.12 -3.92 7.14 71.98 0.51 -3.41 16 24 C -0.13 -3.09 8.47 71.98 0.61 -2.48 16 25 C -0.13 -4.18 7.56 71.98 0.54 -3.63 16 26 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.09 2.29 8.12 -2.39 -0.02 2.27 16 28 H 0.04 1.52 6.60 -2.39 -0.02 1.50 16 29 H 0.17 3.25 8.06 -2.91 -0.02 3.23 16 30 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 31 H 0.12 4.75 7.51 -2.91 -0.02 4.73 16 32 H 0.04 1.87 4.48 -2.39 -0.01 1.86 16 33 H 0.03 1.38 6.46 -2.39 -0.02 1.36 16 34 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 35 H 0.07 2.75 8.04 -2.39 -0.02 2.73 16 36 H 0.07 2.50 7.47 -2.39 -0.02 2.48 16 37 H 0.05 1.69 7.67 -2.39 -0.02 1.67 16 38 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.03 1.00 5.63 -2.39 -0.01 0.98 16 40 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 41 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 43 H 0.04 1.32 6.22 -2.39 -0.01 1.31 16 44 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 45 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -61.01 371.11 6.10 -54.91 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.98 Total: 20.70 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: 4.60 Total: -16.06 kcal Atomic # 7 Polarization: -75.32 SS G_CDS: -1.37 Total: -76.69 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.05 Total: -25.08 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Atomic # 17 Polarization: -2.06 SS G_CDS: -0.08 Total: -2.14 kcal Total: -61.01 6.10 -54.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121974001.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.420 kcal (2) G-P(sol) polarization free energy of solvation -61.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds