Wall clock time and date at job start Tue Mar 31 2020 15:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30503 * 125.64793 * 2 1 4 4 C 1.34135 * 109.25508 * 179.97438 * 3 2 1 5 5 C 1.34668 * 108.01699 * 359.73437 * 4 3 2 6 6 N 1.35046 * 125.65150 * 179.97438 * 2 1 3 7 7 C 1.46499 * 126.39816 * 0.03285 * 6 2 1 8 8 C 1.50711 * 109.46846 * 84.99909 * 7 6 2 9 9 O 1.21394 * 119.99787 * 0.02562 * 8 7 6 10 10 C 1.41728 * 119.99770 * 179.97438 * 8 7 6 11 11 C 1.37858 * 126.91222 * 0.03311 * 10 8 7 12 12 N 1.34675 * 109.61717 * 179.97438 * 11 10 8 13 13 C 1.46499 * 124.64107 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.47304 * 265.02332 * 13 12 11 15 15 H 1.08008 * 119.99946 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00194 * 180.02562 * 14 13 12 17 17 N 1.31506 * 119.99895 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00119 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46808 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47104 * 119.99827 * 18 16 14 21 21 H 1.48494 * 109.47228 * 239.99803 * 18 16 14 22 22 C 1.38013 * 110.70982 * 359.97438 * 12 11 10 23 23 C 1.39146 * 133.03603 * 180.02562 * 22 12 11 24 24 C 1.37777 * 119.94804 * 180.02562 * 23 22 12 25 25 C 1.38734 * 120.63488 * 359.91744 * 24 23 22 26 26 C 1.37797 * 120.26939 * 0.04668 * 25 24 23 27 27 C 1.39192 * 119.67314 * 359.97438 * 26 25 24 28 28 H 1.09008 * 109.47336 * 270.04018 * 1 2 3 29 29 H 1.08995 * 109.47159 * 30.04206 * 1 2 3 30 30 H 1.08997 * 109.47412 * 150.04480 * 1 2 3 31 31 H 1.07997 * 125.98644 * 180.02562 * 4 3 2 32 32 H 1.08001 * 126.58905 * 180.28228 * 5 4 3 33 33 H 1.09003 * 109.47222 * 325.01034 * 7 6 2 34 34 H 1.08994 * 109.47291 * 205.00051 * 7 6 2 35 35 H 1.08000 * 125.19296 * 0.25919 * 11 10 8 36 36 H 1.09003 * 109.47489 * 25.02779 * 13 12 11 37 37 H 1.09001 * 109.46951 * 145.02258 * 13 12 11 38 38 H 0.97006 * 120.00333 * 180.02562 * 17 16 14 39 39 H 1.08002 * 120.03071 * 359.96400 * 23 22 12 40 40 H 1.07992 * 119.68526 * 179.97438 * 24 23 22 41 41 H 1.07996 * 119.86627 * 180.02562 * 25 24 23 42 42 H 1.08002 * 120.16389 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0605 0.0000 4 6 3.5544 0.6819 0.0006 5 6 3.5925 -0.6642 0.0069 6 7 2.2941 -1.0974 0.0005 7 6 1.8426 -2.4910 0.0004 8 6 1.5706 -2.9309 -1.4152 9 8 1.7381 -2.1558 -2.3343 10 6 1.1203 -4.2497 -1.6733 11 6 0.8842 -5.2406 -0.7444 12 7 0.4654 -6.3569 -1.3707 13 6 0.1213 -7.6110 -0.6961 14 6 1.3183 -8.5266 -0.6968 15 1 2.2430 -8.2062 -1.1537 16 6 1.2330 -9.7733 -0.1142 17 7 0.1072 -10.1632 0.4425 18 14 2.7169 -10.9080 -0.1144 19 1 3.8521 -10.2380 -0.7983 20 1 3.0986 -11.2240 1.2855 21 1 2.3795 -12.1640 -0.8311 22 6 0.4047 -6.1575 -2.7350 23 6 0.0412 -6.9770 -3.7992 24 6 0.0814 -6.4898 -5.0874 25 6 0.4803 -5.1848 -5.3375 26 6 0.8432 -4.3578 -4.2967 27 6 0.8075 -4.8377 -2.9906 28 1 -0.3634 0.0007 1.0277 29 1 -0.3633 0.8896 -0.5145 30 1 -0.3634 -0.8903 -0.5131 31 1 4.4098 1.3412 0.0011 32 1 4.4776 -1.2831 0.0132 33 1 0.9294 -2.5772 0.5893 34 1 2.6164 -3.1237 0.4352 35 1 1.0109 -5.1362 0.3230 36 1 -0.1752 -7.4013 0.3316 37 1 -0.7040 -8.0916 -1.2214 38 1 0.0472 -11.0402 0.8528 39 1 -0.2712 -7.9944 -3.6158 40 1 -0.2012 -7.1296 -5.9102 41 1 0.5068 -4.8156 -6.3521 42 1 1.1538 -3.3423 -4.4934 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123497414.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:21 Heat of formation + Delta-G solvation = 80.581310 kcal Electronic energy + Delta-G solvation = -26145.843500 eV Core-core repulsion = 22478.419093 eV Total energy + Delta-G solvation = -3667.424406 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.08413 -41.13912 -38.64679 -36.80368 -33.93191 -33.72253 -32.06766 -31.70336 -29.86762 -29.55294 -28.00271 -27.04113 -26.44899 -23.87014 -22.84125 -21.96054 -21.29655 -20.57545 -19.86173 -18.80288 -17.21168 -17.06504 -16.77290 -16.09993 -15.53962 -15.27372 -15.21272 -14.78835 -14.41916 -14.22577 -14.09137 -13.86911 -13.58501 -13.42354 -13.24026 -12.93266 -12.68345 -12.58480 -12.34535 -12.24567 -12.18527 -11.91403 -11.54902 -11.34295 -11.05415 -11.00987 -10.71775 -10.39424 -10.12388 -9.92275 -9.89965 -9.17921 -9.16291 -8.89924 -8.26046 -7.91448 -7.32999 -6.51153 -4.62311 1.12815 1.79570 2.08144 2.17428 2.73841 3.03766 3.13230 3.16354 3.22638 3.34962 3.43335 4.08315 4.20653 4.28426 4.52428 4.67125 4.80338 4.82918 4.90642 5.00848 5.10554 5.30138 5.30593 5.38508 5.44664 5.48648 5.55851 5.75992 5.81300 5.87005 5.92349 6.00524 6.14948 6.33482 6.36879 6.43469 6.65537 6.78749 6.82177 6.91968 7.00755 7.18720 7.20728 7.39248 7.55964 7.61191 7.66260 7.88401 8.17022 8.44940 9.07492 10.55481 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012562 B = 0.003499 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.344520 B = 7999.688113 C = 9355.735904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.215 3.785 3 N -0.497 5.497 4 C -0.032 4.032 5 C -0.052 4.052 6 N -0.441 5.441 7 C 0.055 3.945 8 C 0.414 3.586 9 O -0.467 6.467 10 C -0.316 4.316 11 C 0.157 3.843 12 N -0.418 5.418 13 C 0.225 3.775 14 C -0.549 4.549 15 H 0.068 0.932 16 C 0.070 3.930 17 N -0.886 5.886 18 Si 0.906 3.094 19 H -0.270 1.270 20 H -0.279 1.279 21 H -0.279 1.279 22 C 0.084 3.916 23 C -0.099 4.099 24 C -0.120 4.120 25 C -0.139 4.139 26 C -0.084 4.084 27 C -0.055 4.055 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.167 0.833 32 H 0.171 0.829 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.175 0.825 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.270 0.730 39 H 0.126 0.874 40 H 0.121 0.879 41 H 0.118 0.882 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.340 10.452 -0.885 10.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.047 4.047 3 N -0.216 5.216 4 C -0.180 4.180 5 C -0.184 4.184 6 N -0.123 5.123 7 C -0.069 4.069 8 C 0.295 3.705 9 O -0.345 6.345 10 C -0.325 4.325 11 C 0.014 3.986 12 N -0.091 5.091 13 C 0.108 3.892 14 C -0.587 4.587 15 H 0.086 0.914 16 C -0.135 4.135 17 N -0.523 5.523 18 Si 0.732 3.268 19 H -0.194 1.194 20 H -0.205 1.205 21 H -0.205 1.205 22 C -0.020 4.020 23 C -0.118 4.118 24 C -0.140 4.140 25 C -0.158 4.158 26 C -0.103 4.103 27 C -0.059 4.059 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.091 0.909 31 H 0.184 0.816 32 H 0.189 0.811 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.192 0.808 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.144 0.856 40 H 0.139 0.861 41 H 0.136 0.864 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.095 11.004 -1.129 11.062 hybrid contribution 1.223 -1.945 0.258 2.311 sum 1.128 9.059 -0.871 9.171 Atomic orbital electron populations 1.20173 0.85295 1.04189 1.03104 1.23188 0.95564 0.81280 1.04710 1.70211 1.02283 1.28223 1.20899 1.22178 0.94737 0.92682 1.08357 1.22642 0.86911 0.96893 1.12003 1.44987 1.06654 1.06476 1.54187 1.22362 1.03956 0.80904 0.99661 1.20026 0.74802 0.86426 0.89256 1.90569 1.42886 1.54656 1.46377 1.19370 1.24038 0.96246 0.92871 1.22545 0.92810 0.85182 0.98100 1.44650 1.47283 1.12282 1.04917 1.19997 0.98122 0.77636 0.93492 1.21311 0.97599 1.00212 1.39597 0.91424 1.24934 0.96728 0.97639 0.94202 1.69909 1.25353 1.20830 1.36246 0.86299 0.82018 0.80303 0.78156 1.19424 1.20474 1.20458 1.18314 1.04491 0.95005 0.84227 1.20225 1.01833 0.99278 0.90503 1.20737 1.01866 0.95841 0.95523 1.20886 1.02323 0.94194 0.98402 1.20487 0.99645 0.99763 0.90391 1.18789 1.02006 0.92499 0.92565 0.90293 0.89255 0.90914 0.81570 0.81143 0.86154 0.85905 0.80765 0.92803 0.93010 0.92018 0.85628 0.86094 0.86431 0.85864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.04 36.00 0.36 -0.38 16 2 C 0.21 3.03 7.89 -155.41 -1.23 1.80 16 3 N -0.50 -7.78 11.25 -10.82 -0.12 -7.90 16 4 C -0.03 -0.44 11.87 -17.81 -0.21 -0.65 16 5 C -0.05 -0.66 11.58 -16.56 -0.19 -0.85 16 6 N -0.44 -5.80 2.24 -115.18 -0.26 -6.06 16 7 C 0.06 0.61 5.44 -5.19 -0.03 0.58 16 8 C 0.41 6.16 7.02 -32.97 -0.23 5.93 16 9 O -0.47 -8.53 16.06 5.46 0.09 -8.44 16 10 C -0.32 -5.09 6.11 -104.88 -0.64 -5.73 16 11 C 0.16 2.41 10.71 -16.44 -0.18 2.23 16 12 N -0.42 -7.82 2.70 -115.28 -0.31 -8.14 16 13 C 0.23 4.79 5.68 -5.19 -0.03 4.77 16 14 C -0.55 -13.21 9.39 -34.44 -0.32 -13.53 16 15 H 0.07 1.69 7.81 -52.48 -0.41 1.28 16 16 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -22.66 13.29 55.43 0.74 -21.92 16 18 Si 0.91 19.29 29.54 -169.99 -5.02 14.27 16 19 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 20 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 22 C 0.08 1.59 6.78 -83.95 -0.57 1.02 16 23 C -0.10 -1.74 9.96 -39.41 -0.39 -2.13 16 24 C -0.12 -1.82 10.01 -39.57 -0.40 -2.22 16 25 C -0.14 -2.08 10.03 -39.56 -0.40 -2.48 16 26 C -0.08 -1.43 9.80 -39.39 -0.39 -1.81 16 27 C -0.06 -1.00 6.24 -104.93 -0.65 -1.66 16 28 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 29 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.76 7.82 -51.93 -0.41 0.35 16 31 H 0.17 1.80 8.06 -52.49 -0.42 1.38 16 32 H 0.17 1.69 8.06 -52.49 -0.42 1.27 16 33 H 0.12 1.00 7.91 -51.93 -0.41 0.58 16 34 H 0.12 1.07 8.13 -51.93 -0.42 0.65 16 35 H 0.18 1.95 7.91 -52.49 -0.42 1.54 16 36 H 0.05 1.14 8.10 -51.93 -0.42 0.72 16 37 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 39 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 40 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 41 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 42 H 0.12 2.07 7.38 -52.49 -0.39 1.68 16 LS Contribution 368.49 15.07 5.55 5.55 Total: -1.00 -31.23 368.49 -10.32 -41.54 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -5.39 Total: 4.60 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -5.59 Total: -13.51 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.04 Total: -44.02 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.09 Total: -8.44 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.27 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.23 -10.32 -41.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123497414.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.125 kcal (2) G-P(sol) polarization free energy of solvation -31.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds